BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481712
Length=472
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27960.1 | Symbols: CKS1, CKS1AT | cyclin-dependent kinase-s... 457 5e-128
> AT2G27960.1 | Symbols: CKS1, CKS1AT | cyclin-dependent kinase-subunit
1 | chr2:11910723-11911685 REVERSE LENGTH=586
Length=586
Score = 457 bits (247), Expect = 5e-128
Identities = 368/421 (87%), Gaps = 30/421 (7%)
Strand=Plus/Plus
Query 82 AGAGAGAAATGGGTCAGATCCAATACTCTGAGAAATACTTCGATGACACTTTCGAATACA 141
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 135 AGAGAGAAATGGGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACA 194
Query 142 GGCACGTTGTTCTTCCCCCTGAAGTCGCTAAGCTTCTTCCAAAGAATCGTCTTCTCTCCG 201
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 195 GGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCG 254
Query 202 AAAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGTGGATGGGTACATTACGCGATTC 261
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 255 AAAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTACGCGGTTC 314
Query 262 ATAGGCCTGAGCCGCATATAATGCTATTCAGGAGGCCTCTTAACTACCAGCAGCAGCAGG 321
|| | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 315 ATCGACCTGAGCCGCACATAATGCTATTCAGGAGGCCTCTTAACTATCAGCAGCAGCAGG 374
Query 322 AGAATCAGGCTCAAAACATGCTCGTTAAGTGAATC-T-ATG--CAGC-GA-T-----TCT 370
||||||| ||||| |||||||| |||||||||||| | || || | || | | |
Sbjct 375 AGAATCAAGCTCAGAACATGCTTGTTAAGTGAATCATTATCATCACCTGAGTAAGAATGT 434
Query 371 -AT--G-AATA-T-C---GA-T-TT-----ATGTTTCTTGTAAACATGGTTTGAACCTTT 414
|| | || | | | || | || ||||||||||||||||||||||||| ||||
Sbjct 435 TATATGCAACAATTCTATGAGTATTGGTTTATGTTTCTTGTAAACATGGTTTGAATCTTT 494
Query 415 GTGGTCATGGATGAATATGTGAC--TTGGTG-GTGGAACAACTTCTATGTTATGTTAGTC 471
||||| |||||||||||||||| ||||| || ||||||||||||||| |||||||||
Sbjct 495 GTGGTTATGGATGAATATGTGAGAGTTGGTTTGTTGAACAACTTCTATGTAATGTTAGTC 554
Query 472 T 472
|
Sbjct 555 T 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454663709
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5