BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481718
Length=3170
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27880.1 | Symbols: AGO5 | Argonaute family protein | chr2:1... 4327 0.0
> AT2G27880.1 | Symbols: AGO5 | Argonaute family protein | chr2:11871488-11876894
FORWARD LENGTH=3176
Length=3176
Score = 4327 bits (2343), Expect = 0.0
Identities = 2913/3181 (92%), Gaps = 67/3181 (2%)
Strand=Plus/Plus
Query 11 GTGGTGGTCACGGCGGCGCTAGTCGTGGTCGAGGA---GGACGTAGGTCTGATCAGAGAC 67
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 17 GTGGTGGTCACGGCGGCGCTAGTCGTGGTCGAGGAGGTGGACGAAGGTCTGACCAGAGAC 76
Query 68 AAGATCAGTCTTCTGGTCAGGCTGCTTGGCCGGGTTTACAACAAAGCTCCGGTGGTCGTG 127
||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 77 AAGATCAGTCTTCTGGTCAAGTTGCTTGGCCGGGTTTACAACAAAGCTACGGTGGTCGTG 136
Query 128 GTGGTTCTGTTTCTGGCGGTAGAGGTCGTGGTAACGTCGGAAGAGGTGAAACTAGTGGAG 187
||||||||||||| | ||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 137 GTGGTTCTGTTTCCGCCGGTAGAGGTCGTGGAAACGTCGGAAGAGGTGAAAATACTGGAG 196
Query 188 ATCTGACGGCGACGCAAGTTCCGGTTGC-T-T-CTGTTTCTGGCGGGAGAGGTCGTGGTA 244
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |
Sbjct 197 ATCTGACGGCGACGCAAGTTCCGGTTGCTTCTGCTGTTTCTGGCGGGAGAGGTCGT-G-- 253
Query 245 ACGTCGGACGAAGCGATTCTACCGGAGATCCGACGGCGACGTCTGTTGCTTCGTCGTCTA 304
|| || | | | ||||||||||| || |||||||| || |||||||
Sbjct 254 --GT------AA-C-A---T--CGGAGATCCGA---CGTTTTCTGTTGCGTCTTCGTCTA 295
Query 305 AGACGATGTCTGTTTCTTCTTCGTCTAAAGAGGAAAGTAAGGTTACGGAGGTTTCTGAGG 364
||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 296 AGACGGTGTCTGTTGCTTCTTCATCTAAAGAGGAAAGTAAGAATACGGAGGTTTCTGAGA 355
Query 365 CTTTGGCGAAGGTTGAGATTACTCCGACGGAGACGAAACCGGAAACGACG---CTTCCTC 421
| || |||| || |||||||| |||||||||||||||| |||| |||| |||||||
Sbjct 356 CCATGTCGAACCTTCAGATTACTTCGACGGAGACGAAACCTGAAATGACGTCACTTCCTC 415
Query 422 CGGCGTCATCTAAGGCGATTACGTATCCGGTACGGCCAGGGCGTGGTACTTTGGGGAAGA 481
||||||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||
Sbjct 416 CGGCGTCATCTAAAGCGGTTACGTTTCCGGTACGGCCAGGACGTGGTACTTTGGGGAAGA 475
Query 482 AAGTCCTTATTCGTGCGAATCATTTCCTTGTTCAAATTGCTGATTGTGATCTCTATCACT 541
||||| | |||||||||||||||||||||||||| |||||||| |||||||||| || |
Sbjct 476 AAGTCATGGTTCGTGCGAATCATTTCCTTGTTCAAGTTGCTGATCGTGATCTCTACCATT 535
Query 542 ACGATGTTTCGATTAATCCCGAGGTGATATCAAAGGCAGTGAACAGGAACGTGATGAAAC 601
||||||||||||| ||||| ||||| ||||||||| |||||||||| |||||||||||||
Sbjct 536 ACGATGTTTCGATCAATCCTGAGGTTATATCAAAGACAGTGAACAGAAACGTGATGAAAC 595
Query 602 TTTTGGTTAAGAACTATAAAGATTCTCACTTGGGAGGGAAGGCTCCAGCGTATGATGGAA 661
|| |||||||||| |||||||| |||||||||||||||||| | ||||||||||||||||
Sbjct 596 TTCTGGTTAAGAATTATAAAGACTCTCACTTGGGAGGGAAGTCACCAGCGTATGATGGAA 655
Query 662 GGAAAAGCCTCTATACTGCTGGTGCATTACCTTTTGAATCGAAAGAGTTTGTTGTGAATC 721
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 656 GGAAAAGCCTCTATACTGCTGGTCCATTACCTTTTGACTCGAAAGAGTTTGTTGTGAATC 715
Query 722 TGGCGGA-AAAGAGAGCTGATGGTTCTTCTGGGAAGGACAGATCGTTTAAAGTTGCTATA 780
||||||| ||| |||||||| ||||| ||||||||||||||| |||||||||||||| ||
Sbjct 716 TGGCGGAGAAA-AGAGCTGACGGTTCCTCTGGGAAGGACAGACCGTTTAAAGTTGCTGTA 774
Query 781 AAG-CTGGCGTCAAGAC-CTGATCTTTATCAGTTGCAACAGTTCCTTGCTCACAGGCAAA 838
||| | | | |||| | |||||||||||||||||||||||||||||| || | |||||
Sbjct 775 AAGAAT-GTGACAAG-CACTGATCTTTATCAGTTGCAACAGTTCCTTGATCGTAAGCAAA 832
Query 839 GAGATGCTCCATATGATACTATCCAAGTGCTTGATGTTGTTCTCAGGGACAAGCCCTCTA 898
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 833 GAGAGGCTCCATATGATACTATCCAAGTGCTTGATGTTGTTCTTAGGGATAAGCCCTCTA 892
Query 899 ATGATTATGTCTCTGTTGGGAGGTCTTTTTTCCACACTAGTTTGGGAAAGGACACCAGAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 893 ATGATTATGTCTCTGTTGGGAGGTCTTTTTTCCACACTAGTTTGGGAAAGGACGCAAGAG 952
Query 959 ATGGTAGGGGTGAGCTTGGAGATGGTATTGAGTACTGGAGAGGTTTTTTCCAAAGTCTAA 1018
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 953 ATGGTAGGGGTGAGCTTGGAGATGGTATTGAGTACTGGAGAGGTTATTTCCAAAGTCTAA 1012
Query 1019 GGCTGACTCAGATGGGTTTGTCTCTTAACATCGACGTTTCAGCAAGATCATTCTT-TGAA 1077
||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 1013 GGCTGACTCAGATGGGTTTGTCTCTGAACATTGACGTTTCAGCAAGATCATT-TTATGAA 1071
Query 1078 CCAATCGTTGTCACTGAGTTTATTAGCAAGTTTCTGAATATAAGAGACTTAAACAGACCA 1137
|| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1072 CCGATTGTTGTCACTGACTTTATTAGCAAGTTTCTGAATATAAGGGACTTAAACAGGCCA 1131
Query 1138 CTTAGAGACTCAGATCGACTTAAGGTGAAGAAAGTTTTGAGGACACTAAAAGTTAAGTTG 1197
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1132 CTTAGAGACTCAGATCGACTTAAGGTGAAGAAAGTTTTGAGGACACTGAAAGTTAAGTTG 1191
Query 1198 CTACATTGGAACAGCACAAAAAGTGCCAAGATTAGTGGGATTTCCAGCTGT-CCCATCAG 1256
|| || |||||| |||||||||||||||| |||||||||||||| || | | ||||||||
Sbjct 1192 CTTCACTGGAACGGCACAAAAAGTGCCAAAATTAGTGGGATTTCTAG-TCTACCCATCAG 1250
Query 1257 TCAGCTAAGGTTCACTTTAGAGGACAAATCAGAGAAGACGGTTATACAATATTTTGCTGA 1316
|||||||||||||| | |||||||||||||||||||||||| | ||||||||||||||
Sbjct 1251 GGAGCTAAGGTTCACTCTGGAGGACAAATCAGAGAAGACGGTTGTTCAATATTTTGCTGA 1310
Query 1317 AAAATATAATTATAGAGTGATATACCCGGCTCTACCTGCTATTCAAACTGGGAGTGACAC 1376
|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct 1311 AAAATATAATTATAGAGTGAAATACCAGGCTCTACCTGCTATTCAAACAGGGAGTGACAC 1370
Query 1377 AAGACCCGTCTACCTACCGATGGAACTCTGCCAAATTGACGAAGGGCAAAGATACACCAA 1436
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1371 AAGACCCGTCTACCTACCAATGGAGCTCTGCCAAATTGACGAAGGGCAAAGATACACCAA 1430
Query 1437 AAGGCTTAATGAGAAGCAAGTGACTGCGTTGCTAAGAGCTACCTGCCAACGACCTCAAGA 1496
|||||| |||||||||||||||||||| ||||||| |||||||||||||||||| | ||
Sbjct 1431 AAGGCTCAATGAGAAGCAAGTGACTGCATTGCTAAAAGCTACCTGCCAACGACCCCCTGA 1490
Query 1497 CAGAGAGAACTCGATCAAAAACTTGGTTGTGAAAAATAATTATAACGATGTTCATGGTCT 1556
|||||||||||||||||||||||||||||||||||||| | | || ||| ||| |||
Sbjct 1491 TAGAGAGAACTCGATCAAAAACTTGGTTGTGAAAAATAA-T-T-ACAATG---ATGATCT 1544
Query 1557 GAGCAAGGAGTTTGGGATGTCAGTGACTAGCCAACTAGCCTCGATTGAAGCTCGTGTACT 1616
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1545 GAGCAAGGAGTTTGGGATGTCAGTGACTACCCAACTAGCCTCGATTGAAGCTCGTGTACT 1604
Query 1617 TCCTCCACCGATGTTGAAGTACCATGAAAGCGGTAGAGAGAAGATGGTCAATCCAAGCCT 1676
||| ||||||||||||||||||||||| || |||| |||||| ||||| |||||||| ||
Sbjct 1605 TCCCCCACCGATGTTGAAGTACCATGACAGTGGTAAAGAGAAAATGGTAAATCCAAGGCT 1664
Query 1677 AGGACAGTGGAACATGATTAACAAGAAAATGGTTAATGGAGCAAGAGTTGCATCTTGGAC 1736
||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||||
Sbjct 1665 AGGACAGTGGAACATGATTGACAAGAAAATGGTTAATGGAGCAAAAGTCACTTCTTGGAC 1724
Query 1737 TTGCGTAAATTTCTCTACGCGGATTGACCGGGGTTTACCCCAAGAGTTCTGCAAACAATT 1796
|||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1725 TTGCGTAAGTTTCTCTACTCGGATTGACCGTGGTTTACCCCAAGAGTTCTGCAAACAGTT 1784
Query 1797 GACTGGGATGTGCGTGAGCAAAGGAATGGAATTTAATCCACAACCTGCTATTCCGTTCAT 1856
|| ||||||||| || |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1785 GATTGGGATGTGTGTCAGCAAAGGAATGGAATTTAAGCCTCAACCTGCTATTCCGTTCAT 1844
Query 1857 TTCTTATCCGCCTCAAAGA-ATTGAGGAAGCTCTTCAT-GATATCCACAATAGGGCACCT 1914
|||| ||| ||| || | |||||||||||||||| | ||||||||||| |||||||||
Sbjct 1845 CTCTTGTCCCCCT-GAACATATTGAGGAAGCTCTTC-TCGATATCCACAAAAGGGCACCT 1902
Query 1915 GGTCTCCAACTGTTGATTGTAATATTGCCTGATGTGACTGGATCATATGGACAAATCAAA 1974
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1903 GGTCTCCAACTGTTGATTGTAATATTGCCTGATGTGACTGGATCATATGGAAAAATAAAA 1962
Query 1975 AGGATCTGTGAAACAGAATTGGGGATCGTCTCTCAGTGTTGCCAACCAAGACAAGCTT-C 2033
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 1963 AGGATCTGTGAAACAGAATTGGGGATTGTCTCTCAGTGTTGCCAACCTAGACAAG-TTAA 2021
Query 2034 TAAACTCAATAAGCAGTACATGGAAAATGTTGCCTTGAAGATTAATGTCAAGACTGGGGG 2093
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2022 TAAACTCAACAAGCAGTACATGGAAAATGTTGCCTTGAAGATCAATGTCAAGACTGGGGG 2081
Query 2094 AAGGAACACTGTTCTTAATGATGCTATTAGAAGAAACATACCTCTTATTACTGATCGCCC 2153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2082 AAGGAACACTGTTCTTAATGATGCTATTAGAAGAAACATACCTCTTATTACTGATCGTCC 2141
Query 2154 AACCATAATCATGGGTGCTGATGTGACTCACCCGCAACCTGGAGAGGACTCGAGTCCTTC 2213
|||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 2142 AACCATCATCATGGGTGCTGATGTGACTCACCCACAGCCTGGAGAGGACTCAAGTCCTTC 2201
Query 2214 TATTGCTGCTGTTGTGGCCTCTATGGACTGGCCTGAGAT-AACTAAATACCGAGGACTGG 2272
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 2202 TATTGCTGCTGTTGTGGCCTCTATGGACTGGCCTGAGATAAAC-AAATACCGAGGATTGG 2260
Query 2273 TTTCTGCTCAAGCTCATAGGGAAGAAATTATCCAGGACCTGTATAAGCTGGTTCAGGATC 2332
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2261 TTTCTGCTCAAGCTCATAGGGAAGAAATTATTCAGGACCTGTATAAGCTGGTTCAGGATC 2320
Query 2333 CACAACGTGGGCTAGTCCACTCTGGTTTGATAAGGGAACATTTCATAGCATTCAGGAGAG 2392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2321 CACAACGTGGGCTAGTCCACTCTGGTTTGATAAGGGAACATTTCATAGCATTCAGGAGAG 2380
Query 2393 CTACGGGCCAGATACCTCAAAGGATTATCTTCTATCGCGACGGAGTAAGCGAAGGGCAGT 2452
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2381 CTACAGGCCAGATACCTCAAAGGATCATCTTCTATCGTGACGGAGTAAGCGAAGGGCAGT 2440
Query 2453 TTAGTCAGGTTCTGCTGCATGAGATGACAGCTATACGAAAGGCTTGTAACTCTCTCCAAG 2512
|||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 2441 TTAGTCAGGTTCTGCTACATGAGATGACTGCTATCCGCAAGGCTTGTAACTCTCTCCAAG 2500
Query 2513 AGAACTATGTTCCTCGTGTCACTTTCGTGATTGTCCAGAAACGTCACCACACTCGTTTGT 2572
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2501 AGAATTATGTTCCTCGTGTTACTTTCGTGATTGTCCAGAAACGTCACCACACACGTTTGT 2560
Query 2573 TCCCTGAGCAACACGGGAATCGTGATACGACTGATAAAAGTGGCAATATTCAACCAGGTA 2632
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 2561 TCCCTGAGCAACACGGGAATCGTGATATGACTGATAAGAGTGGCAATATTCAACCAGGTA 2620
Query 2633 CTGTCGTTGACACTACAATCTGTCACCCGAATGAGTTCGACTTCTATTTGAACAGCCACG 2692
||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 2621 CTGTCGTGGACACTAAAATCTGTCACCCTAATGAATTCGACTTCTATTTGAACAGCCATG 2680
Query 2693 CTGGTATTCAGGGAACAAGCAGGCCGGCTCATTACCATGTTCTCCTCGACGAGAACCGTT 2752
|||||||||||||||||||||||||||| ||||||||||| || ||||| |||||| |||
Sbjct 2681 CTGGTATTCAGGGAACAAGCAGGCCGGCACATTACCATGTACTTCTCGATGAGAACGGTT 2740
Query 2753 TCACTGCTGATCAGTTGCAAATGCTCACCAACAACCTTTGCTACACGTTTGCGAGGTGCA 2812
|||| ||||||||||||||||||||||| |||||||| |||||||||| ||||||||| |
Sbjct 2741 TCACCGCTGATCAGTTGCAAATGCTCACAAACAACCTCTGCTACACGTATGCGAGGTGTA 2800
Query 2813 CAAGATCTGTGTCAATTGTGCCACCAGCCTACTACGCTCACTTGGCTGCTTTCCGTGCCC 2872
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2801 CAAAATCTGTGTCAATTGTGCCACCAGCCTACTACGCTCACTTGGCTGCATTCCGTGCCC 2860
Query 2873 GCTACTACATGGAGAGTGAGATGTCTGATGGAGGCTCGAGCAGGTCGAGGAACACAACAA 2932
|||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||||||
Sbjct 2861 GCTACTACATGGAGAGTGAGATGTCTGATGGAGGTTCGAGCAGGTCCAGGAGCTCAACAA 2920
Query 2933 CAGGTGCGGGTCAAGTCATTTCGCAGCTCCCAGCAATAAAAGATAACGTCAAGGACGTTA 2992
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2921 CAGGTGTGGGTCAAGTCATTTCGCAGCTCCCAGCAATAAAAGATAACGTCAAGGAGGTTA 2980
Query 2993 TGTTTTACTGCTGATGATACTTCTTCTTCTCTTTACCAGTTTCAAAAGCCGTTAATACTT 3052
||||||| |||| ||||| | ||||||||||| ||||||| |||||||||||||| ||
Sbjct 2981 TGTTTTATTGCTAATGATTCA-CTTCTTCTCTTG-CCAGTTTTAAAAGCCGTTAATAATT 3038
Query 3053 CaaaaaaaaaaaCTATATGCGGCTCG-GGTTTGACCACTTTTGGGTTTGGCTGTGAATGT 3111
| |||| |||||| |||||| |||| | | ||||||||||||||||| ||| |
Sbjct 3039 -ATGAAAA----CTATATTCGGCTCTCGGTT--ATCTCTTTTGGGTTTGGCTGTTAATAT 3091
Query 3112 TTTGAAGGAT-TCGGCCAACTTTTTCTC-TTAGGACTTATATTATGCGTTTTGTTTTAAG 3169
|||||||||| | ||||||||||| | | ||||||||||| |||||||||||| ||| ||
Sbjct 3092 TTTGAAGGATCT-GGCCAACTTTTGCGCCTTAGGACTTATGTTATGCGTTTTGGTTTCAG 3150
Query 3170 A 3170
|
Sbjct 3151 A 3151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157674701849
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5