BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481719
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27860.1 | Symbols: AXS1 | UDP-D-apiose/UDP-D-xylose synthas... 2047 0.0
AT1G08200.1 | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthas... 1426 0.0
> AT2G27860.1 | Symbols: AXS1 | UDP-D-apiose/UDP-D-xylose synthase
1 | chr2:11864393-11866907 REVERSE LENGTH=1525
Length=1525
Score = 2047 bits (1108), Expect = 0.0
Identities = 1250/1318 (95%), Gaps = 12/1318 (1%)
Strand=Plus/Plus
Query 1 CTCTTTCTCTTTAGATTCTCTCTCTACAGAGAA-TTCGAttttttttttCTAATCTGAG- 58
||||| ||||||||||||||||||||||||||| || || || |||||||| |||||||
Sbjct 1 CTCTTCCTCTTTAGATTCTCTCTCTACAGAGAACTT-GA-TTATTTTTTCTGATCTGAGA 58
Query 59 -AAAAAATGGCGAACGGAGCTAATAGAGTGGATCTAGACGGAAAACCGATAAAACCGATC 117
||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| |
Sbjct 59 AAAAAAATGGCGAATGGAGCTAATAGAGTGGATCTCGACGGGAAACCGATACAACCGTTG 118
Query 118 ACAATATGCATGATCGGAGCCGGAGGTTTCATCGGTTCACATCTCTGTGAAAAACTGATG 177
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 119 ACAATATGCATGATCGGCGCCGGAGGTTTCATCGGTTCACATCTCTGTGAAAAGCTCTTG 178
Query 178 ACGGAGACGCCTCACAAGGTGCTTGCGCTTGATGTTTACAACGATAAGATCAAACACTTG 237
|| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 179 ACCGAGACGCCACATAAGGTGCTTGCGCTCGATGTTTACAACGATAAGATCAAACACTTG 238
Query 238 CTTGAGCCAGATTCCGTTGAATGGAGTGGTCGGATCCAGTTTCATCGTATCAATATCAAG 297
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 CTTGAGCCTGATACCGTTGAATGGAGTGGTCGGATCCAGTTTCATCGTATCAATATTAAG 298
Query 298 CATGATTCGAGGCTTGAAGGTCTTATTAAGATGGCGGATCTGACTATAAATCTTGCTGCG 357
||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 299 CATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTGATTATAAATCTTGCTGCG 358
Query 358 ATCTGTACTCCAGCTGATTACAATACACGTCCTCTTGATACAATCTACAGCAATTTCATT 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 ATCTGTACTCCAGCTGATTACAATACACGTCCTCTTGATACTATCTACAGCAATTTCATT 418
Query 418 GATGCGCTTCCAGTTGTTAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCT 477
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GATGCGCTTCCAGTTGTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCT 478
Query 478 ACCTGTGAAGTGTATGGAAAAACCATTGGTAGCTTTCTTCCTAAGGATCATCCTCTGCGT 537
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 479 ACCTGTGAAGTTTATGGAAAAACCATTGGAAGCTTTCTTCCTAAGGATCATCCTCTGCGT 538
Query 538 GAGGATCCTGCTTTCTATGTTCTTAAAGAAGATATTTCCCCTTGCATATTTGGTTCAATT 597
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GATGATCCTGCTTTCTATGTTCTTAAAGAAGATATTTCCCCTTGCATATTTGGTTCAATT 598
Query 598 GAGAAGCAGAGGTGGTCATATGCGTGTGCAAAGCAACTGATTGAGAGACTTGTTTACGCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAGAAGCAGAGGTGGTCATATGCGTGTGCAAAGCAACTGATTGAGAGACTTGTTTACGCT 658
Query 658 GAGGGTGCTGAGAATGGACTTGAGTTCACTATTGTAAGACCTTTTAACTGGATTGGACCT 717
||||||||||||||||| ||||||||||| || ||| |||||||||||||||||||||||
Sbjct 659 GAGGGTGCTGAGAATGGGCTTGAGTTCACCATCGTACGACCTTTTAACTGGATTGGACCT 718
Query 718 AGGATGGATTTCATCCCCGGCATTGATGGTCCTAGCGAAGGTGTCCCACGTGTCCTTGCC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGGATGGATTTCATCCCCGGCATTGATGGTCCTAGCGAAGGTGTCCCACGTGTCCTTGCC 778
Query 778 TGTTTTAGTAATAATCTTCTACGTCGTGAGCCTCTCAAGCTTGTGGATGGTGGAGAATCA 837
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 779 TGCTTTAGTAACAATCTTCTACGTCGTGAGCCTCTCAAGCTTGTAGATGGTGGAGAATCA 838
Query 838 CAGAGAACTTTCATCTACATCAAGGATGCTATCGAAGCTGTCCTTTTGATGATTGAAAAC 897
|||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 839 CAGAGAACTTTCGTCTACATCAATGATGCTATTGAAGCTGTCCTTTTGATGATTGAAAAC 898
Query 898 CCAGAGAGGGCAAATGGCCATATCTTCAATGTGGGCAATCCGAACAACGAAGTTACAGTA 957
||||||||||||||||| || |||||||| || ||||| |||||||||||||||||||||
Sbjct 899 CCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAACAACGAAGTTACAGTA 958
Query 958 CGACAGCTAGCTGAAATGATGACTGAGGTTTACGCAAAAGTGAGTGGAGAAGGAGCCATT 1017
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 959 AGACAGCTCGCTGAAATGATGACCGAGGTTTACGCAAAAGTGAGTGGAGAAGGAGCCATT 1018
Query 1018 GAGAGCCCGACGGTTGATGTTAGCTCCAAAGAGTTTTACGGGGAAGGTTATGATGACAGT 1077
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAGAGCCCAACGGTTGATGTTAGCTCCAAAGAGTTTTACGGGGAAGGTTATGATGACAGT 1078
Query 1078 GACAAGAGAATCCCAGACATGACCATCATTAACCGCCAGCTCGGATGGAACCCGAAAACA 1137
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1079 GACAAGAGAATCCCAGACATGACCATCATTAACCGCCAACTCGGATGGAACCCGAAAACA 1138
Query 1138 TCGCTGTGGGACTTGCTCGAGTCGACCTTAACCTATCAGCACAGGACCTACGCTGAAGCT 1197
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1139 TCGCTATGGGACTTGCTCGAGTCGACCTTAACCTACCAGCACAGGACATACGCTGAAGCT 1198
Query 1198 GTGAAGAAAGCAACATCCAAACCAGTGGCTTCCTAAACTCTCCAAGACCCAAGTTACCAA 1257
|||||||| ||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 1199 GTGAAGAAGGCAACATCCAAACCAGTGGCTTCCTAAACTCTCCAAGACCCCA---ACGAA 1255
Query 1258 CAAGACTCGTTAAACACGCATCATTTTGCCATTTTACTCTATTCGATTCTAttttttt 1315
| |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1256 -A---CTCGTTAAACACGCGTCATTTTGGCATTTTACTCTATTCGATTCTATTTTTTT 1309
> AT1G08200.1 | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthase
2 | chr1:2573848-2576714 REVERSE LENGTH=1686
Length=1686
Score = 1426 bits (772), Expect = 0.0
Identities = 1038/1169 (89%), Gaps = 8/1169 (1%)
Strand=Plus/Plus
Query 59 AAAAAATGGCGAACGGAGCTAATAGAGTGGATCTAGACGGAAAACCGATAAAACCGATCA 118
|||| |||||||||||||| ||||| ||||||| ||||| |||||||| || ||||| |
Sbjct 101 AAAATATGGCGAACGGAGCCGATAGATTGGATCTGGACGGTAAACCGATTAAGCCGATGA 160
Query 119 CAATATGCATGATCGGAGCCGGAGGTTTCATCGGTTCACATCTCTGTGAAAAACTGATGA 178
| |||||||||||||| |||||||||||||| || || ||||||||||| || || ||||
Sbjct 161 CGATATGCATGATCGGTGCCGGAGGTTTCATTGGCTCTCATCTCTGTGAGAAGCTTATGA 220
Query 179 CGGAGACGCCTCACAAGGTGCTTGCGCTTGATGTTTACAACGATAAGATCAAACACTTGC 238
||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 221 CGGAGACTCCTCACAAGGTTCTTGCGCTTGATGTTTACAATGATAAGATCAAGCACTTGC 280
Query 239 TTGAGCCAGATTCCGTTGAATGGAG-TGGTCGGATCCAGTTTCATCGTATCAATATCAAG 297
||||||| ||| ||||| ||||| | ||||||||||||||||||||||||||| || |||
Sbjct 281 TTGAGCCTGATACCGTTCAATGG-GCTGGTCGGATCCAGTTTCATCGTATCAACATTAAG 339
Query 298 CATGATTCGAGGCTTGAAGGTCTTATTAAGATGGCGGATCTGACTATAAATCTTGCTGCG 357
|||||||| || |||||||| || || |||||||| |||||||| |||||||| ||||||
Sbjct 340 CATGATTCTAGACTTGAAGGACTGATCAAGATGGCAGATCTGACGATAAATCTAGCTGCG 399
Query 358 ATCTGTACTCCAGCTGATTACAATACACGTCCTCTTGATACAATCTACAGCAATTTCATT 417
|||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 400 ATCTGTACTCCAGCAGATTACAATACGCGTCCTCTTGACACTATCTACAGCAATTTCATT 459
Query 418 GATGCGCTTCCAGTTGTTAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCT 477
||||| || ||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 460 GATGCTCTCCCAGTGGTTAAATACTGCTCAGAGAACAACAAGCGTCTGATTCACTTTTCC 519
Query 478 ACCTGTGAAGTGTATGGAAAAACCATTGGTAGCTTTCTTCCTAAGGATCATCCTCTGCGT 537
|| |||||||||||||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct 520 ACTTGTGAAGTGTATGGAAAAACTATAGGAAGCTTTCTTCCAAAGGATCATCCTCTGCGT 579
Query 538 GAGGATCCTG-CTTTCTATGTTCTTAAAGAAGATATTTCCCCTTGCATATTTGGTTCAAT 596
||||||||| ||| ||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct 580 CAGGATCCTGAATTT-TATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTTCAAT 638
Query 597 TGAGAAGCAGAGGTGGTCATATGCGTGTGCAAAGCAACTGATTGAGAGACTTGTTTACGC 656
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 639 TGAGAAGCAGAGGTGGTCATATGCTTGTGCAAAGCAACTTATTGAGAGACTTGTTTACGC 698
Query 657 TGAGGGTGCTGAGAATGGACTTGAGTTCACTATTGTAAGACCTTTTAACTGGATTGGACC 716
||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct 699 TGAGGGTGCTGAGAATGGACTCGAGTTCACCATTGTAAGACCATTCAACTGGATTGGACC 758
Query 717 TAGGATGGATTTCATCCCCGGCATTGATGGTCCTAGCGAAGGTGTCCCACGTGTCCTTGC 776
|||||||||||||||||| |||||||||||||||||||| ||||||||||| || || ||
Sbjct 759 TAGGATGGATTTCATCCCTGGCATTGATGGTCCTAGCGAGGGTGTCCCACGGGTTCTAGC 818
Query 777 CTGTTTTAGTAATAATCTTCTACGTCGTGAGCCTCTCAAGCTTGTGGATGGTGGAGAATC 836
|| |||||||| |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 819 GTGCTTTAGTAACAATCTTCTGCGACGGGAGCCTCTCAAGCTTGTGGATGGTGGAGAATC 878
Query 837 ACAGAGAACTTTCATCTACATCAAGGATGCTATCGAAGCTGTCCTTTTGATGATTGAAAA 896
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 879 ACAGAGAACCTTCATCTACATCAAAGATGCTATCGAAGCTGTCCTTTTGATGATCGAAAA 938
Query 897 CCCAGAGAGGGCAAATGGCCATATCTTCAATGTGGGCAATCCGAACAACGAAGTTACAGT 956
|||||||| || ||||| |||||||||||||| ||||| || ||||| ||||| |||||
Sbjct 939 TCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAACCCAAACAATGAAGTGACAGT 998
Query 957 -ACGACAGCTAGCTGAAATGATGACTGAGGTTTACGCAAAAGTGAGTGGAGA-AGGAGCC 1014
| |||| || |||||||||||||||||||| ||||| |||||||||||||| | |||
Sbjct 999 GA-GACAACTTGCTGAAATGATGACTGAGGTCTACGCCAAAGTGAGTGGAGAGAC-AGCT 1056
Query 1015 ATTGAGAGCCCGACGGTTGATGTTAGCTCCAAAGAGTTTTACGGGGAAGGTTATGATGAC 1074
|| ||||| || ||| | || || ||||||||||||||||| || |||||||||||||||
Sbjct 1057 ATCGAGAGTCCAACGATCGACGTGAGCTCCAAAGAGTTTTATGGAGAAGGTTATGATGAC 1116
Query 1075 AGTGACAAGAGAATCCCAGACATGACCATCATTAACCGCCAGCTCGGATGGAACCCGAAA 1134
|| ||||||||||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct 1117 AGCGACAAGAGAATCCCAGACATGACCATCATCAACCGTCAACTTGGATGGAACCCGAAG 1176
Query 1135 ACATCGCTGTGGGACTTGCTCGAGTCGACCTTAACCTATCAGCACAGGACCTACGCTGAA 1194
|| ||||| ||||||||||| || ||||||||||| || ||||||| ||| || || |||
Sbjct 1177 ACGTCGCTTTGGGACTTGCTTGAATCGACCTTAACATACCAGCACACGACTTATGCGGAA 1236
Query 1195 GCTGTGAAGAAAGCAACATCCAAACCAGT 1223
|| | ||||| || || || ||||||||
Sbjct 1237 GCCATTAAGAAGGCCACTTCAAAACCAGT 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5