BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481720
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27830.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1033 0.0
> AT2G27830.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G22758.1);
Has 131 Blast hits to 131 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11860218-11861475
FORWARD LENGTH=1258
Length=1258
Score = 1033 bits (559), Expect = 0.0
Identities = 823/939 (88%), Gaps = 64/939 (7%)
Strand=Plus/Plus
Query 42 CTCTT-ACATTCCATTACTCTTTAT-CTTTATACCCTCACCATCCTCCATTATTTACATT 99
||||| |||||||||||||| |||| |||| |||||||| ||||||||| |||||||| |
Sbjct 351 CTCTTAACATTCCATTACTC-TTATCCTTT-TACCCTCATCATCCTCCACTATTTACAGT 408
Query 100 TTTGCCACTCTGACTTTATGTTATTAGCTTCTTCCGGTGACCGGCGACAACAC--GAGAG 157
|||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 409 TTTGCCACTCTGACTTTATG---CTAGCTTCTTCCGGTGACTGGCGATAACACGAGAGAG 465
Query 158 ----CG------CC-A-C--CGTA-TC-T-C--C----AAGCTTCA-TACACATGAAGAA 193
|| || | | | || || | | | ||| || | | ||||||||||
Sbjct 466 CCTTCGCCTTCTCCAAGCTTCATACTCTTCCGACGATAAAGATT-AGAAGACATGAAGAA 524
Query 194 CGGTAACCGGAAAACAACGCCGGAAACAGAGAAGTCTCACCGGAGAAAATTATCGGAGAA 253
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 525 CGGTAACCGGAAAACAACGCCGGAAACAGAGAAGTCTCACCGGAGAAAGTTATCAGAGAA 584
Query 254 AGCGATGTCGTTTCACGGCAGAGGAACAACGCCGGTATCGAATCCAGGTGAGCTTCGAAG 313
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 585 AGCGATGTCGTTTCACGGCAGAGGAACAACGCCGTTATCAAATCCAGGCGAGCTTCGAAG 644
Query 314 ACCGAAAACATTACCGGAGTTATTCTCCACCGGTCAAAGCATCACCGGACCGGTGACGGA 373
||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 645 ACCGAAAACGTTACCGGAGTTATTCTCCACCGGTCAAAGCATCACCGTACCGGAGACGGT 704
Query 374 ATC-GTTCCCGCCGCGTCTAACGAAACTTTTACTCAACGTAACGGTGCAAGGAAGTTTAG 432
|| || ||||| ||| | |||||||||||||| ||||| ||||| |||||||||||||
Sbjct 705 TTCACTT-CCGCCACGTTTGACGAAACTTTTACTTAACGTGACGGTACAAGGAAGTTTAG 763
Query 433 GAGCTGTACAAATTATAATCTCGCCGGAATCCACCGTGAGTGGTCTAATCGACGCCG-CG 491
|||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 764 GAGCCGTACAAATTATAATCTCGCCGGAATCCACCGTGAGTGATTTAATCGACGCCGCCG 823
Query 492 ATTCGTCAGTATGTTAAAGAAGCTCGCCGGCCATTTTTACCGAAATCTGAACCGTCAAGA 551
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 824 -TTCGTCAGTACGTTAAAGAAGCTCGCCGGCCATTTTTACCGGAATCTGAACCGTCACGA 882
Query 552 TTTGATCTTCATTATTCTCAGTTTAGTCTCGAAAGTATTGGAAGAGACGAGAAGCTGATA 611
|||||||||||||| || ||||||||||| || ||||||| ||||||||||||| |||||
Sbjct 883 TTTGATCTTCATTACTCGCAGTTTAGTCTTGAGAGTATTGTAAGAGACGAGAAGTTGATA 942
Query 612 TCGCTTGGATCGAGAAACTTTTTCTTATGTGGCCGGAAAGAGACCGGAGGCTTTATCGGC 671
||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 943 TCGCTAGGGTCGAGAAACTTTTTCTTATGTGGTCGGAAAGAGACCGGAGGGTTTATCGGC 1002
Query 672 GGTGGTTCATCGTCGGAATCTTGTTCGAAGGAAGCAGAGAAAGTGGCTAAAACTGGTTTT 731
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1003 TGTGGTTTATCGTCGGAATCTTGTTCTAAGGAAGCAGAGAAAGTGGCTAAAACTGGTTTT 1062
Query 732 CATTGGCTCAAATTTATGGGCTTCTAGAAGTTTTTAATCATTTTGGATTATTGCTTTTTT 791
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1063 CATTGGCTCAAATTTATGGGCTTCTAGAAGTTTTTA-TCATTTTGAATTATTGCTTTTT- 1120
Query 792 CGAATTAGTTCCATT-TTTAGGAAAAGGATATATAAAACaaaaaaaaaaTTTGGTAATCT 850
| ||||||||||||| ||||| ||||||||||| |||||| | || |
Sbjct 1121 CAAATTAGTTCCATTCTTTAGAAAAAGGATATAAAAAACA---------TCTG-T----- 1165
Query 851 GTATAT-ATTTTCTATGTAGAAATGAAAATCATTAATTTGTGGTGTATAATGTATTTTAA 909
|||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1166 GTATATTATTT-CTATGTAGAAATGAAAATCATTAATTAGTGGTGTATAATGTATTTTAA 1224
Query 910 TCAAATTATATACTACCAAGATGATTATA-GAAAGTTCT 947
|||| |||||||| | |||||||||||| ||| |||||
Sbjct 1225 TCAA-TTATATAC--C-AAGATGATTATATGAA-GTTCT 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46315883534
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5