BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481721
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27820.1 | Symbols: PD1, ADT3 | prephenate dehydratase 1 | c... 1786 0.0
> AT2G27820.1 | Symbols: PD1, ADT3 | prephenate dehydratase 1 |
chr2:11856768-11858288 FORWARD LENGTH=1521
Length=1521
Score = 1786 bits (967), Expect = 0.0
Identities = 1161/1249 (93%), Gaps = 35/1249 (3%)
Strand=Plus/Plus
Query 196 GTCAACAACAACGGCGCCGGAATCTCAGATTTGAATCTAGTTCCATTCAATAACAACAGC 255
||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 276 GTC-ACAACAACGGCGCCGGAGTCTCAGATTTGAATCTAGTTCCATTCAACAACAAC--C 332
Query 256 AAATCGATTCAATCGAAGAAGCCTCTT-AGTATTTCAGATCTATCTCCAGCTCCGATGCA 314
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 333 -AATCGATTCAATCGAAGAAGCCT-TTAAGTATTTCAGATCTATCTCCAGCTCCGATGCA 390
Query 315 TGGATCTAACCTCCGCGTCGCCTATCAAGGTGTTCCCGGAGCTTACTCCGAAGCCGCCGC 374
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 391 TGGATCTAACCTCCGTGTAGCTTATCAAGGTGTTCCCGGAGCTTACTCCGAAGCCGCCGC 450
Query 375 TGGTAAAGCTTATCCTAACTGTCAAGCGATTCCTTGCGATCAATTCGAAGTTGCGTTTCA 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TGGTAAAGCTTATCCTAACTGTCAAGCGATTCCTTGCGATCAATTCGAAGTTGCGTTTCA 510
Query 435 AGCGGTTGAGCTTTGGATCGCCGATCGCGCTGTTTTACCTGTCGAAAACTCACTCGGCGG 494
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 511 AGCGGTTGAGCTTTGGATCGCCGATCGCGCTGTTTTACCCGTCGAAAACTCACTCGGCGG 570
Query 495 TTCGATTCATCGGAATTACGATCTTCTTCTCCGTCACCGTCTTCATATCGTCGGTGAAGT 554
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 571 TTCGATTCATCGTAATTACGATCTTCTCCTCCGTCACCGTCTTCACATCGTCGGCGAAGT 630
Query 555 TCAACTTCCGGTACATCATTGTCTCATGGCTCTTCCCGGTGTACGGAAAGAGTTTCTCAC 614
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 631 TCAGCTTCCGGTTCATCATTGTCTCATTGCTCTTCCCGGTGTACGGAAAGAGTTTCTCAC 690
Query 615 TCGCGTTATCTCTCATCCTCAAGGACTAGCTCAATGCGAACACACGTTGACTAAACTCGG 674
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TCGTGTGATCTCTCATCCTCAAGGACTAGCTCAATGCGAACACACGTTGACTAAACTCGG 750
Query 675 TCTCAACGTCGCTCGTGAAGCGGTTGATGATACCGCCGGAGCAGCGGAGTTTATCGCTGC 734
||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 751 TCTCAACGTAGCTCGTGAAGCTGTTGATGATACCGCCGGTGCGGCGGAGTTTATCGCTGC 810
Query 735 GAACAATATCCGTGATACCGCCGCGATTGCGAGTGCACGCGCGGCGGAGATCTACGGATT 794
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GAATAATATCCGTGACACCGCCGCGATTGCGAGTGCACGCGCGGCGGAGATCTACGGATT 870
Query 795 GGAGATTTTGGAAGATGGGATTCAAGATGACGCGAGTAACGTCACGCGCTTTGTGATGTT 854
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 871 GGAGATTTTGGAAGATGGGATACAAGATGACGCGAGTAACGTCACGCGCTTTGTGATGTT 930
Query 855 GGCGCGTGAACCGATTATACCGAGAACTGATCGGCCGTTTAAGACGAGTATAGTGTTTGC 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GGCGCGTGAACCGATTATACCGAGAACTGATCGGCCGTTTAAGACGAGTATAGTGTTTGC 990
Query 915 TCACGAGAAAGGCACGTGCGTTTTGTTTAAGGTTCTCTCGGCTTTTGCGTTTAGGAACAT 974
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 991 TCACGAGAAAGGCACGTGCGTTTTGTTTAAGGTTCTCTCTGCTTTTGCGTTTAGGAACAT 1050
Query 975 TAGTTTGACTAAGATTGAGTCTAGGCCCAACCATAATGTTCCCATTAGGCTAGTCGATGA 1034
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1051 TAGTTTGACTAAGATTGAGTCTAGGCCGAACCATAATGTTCCTATTAGGCTAGTCGATGA 1110
Query 1035 GGCCAATGTGGGAACGGCCAAGCATTTCGAGTACATGTTTTATATCGATTTCGAGGCTTC 1094
||| |||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||
Sbjct 1111 GGCTAATGTGGGCACGGCTAAGCATTTTGAGTATATGTTTTATATCGACTTCGAGGCTTC 1170
Query 1095 GATGGCCGAGGCGCGTGCTCAAAATGCGCTTGCTGAGGTTCAGGAGTTTACGTCGTTTTT 1154
||||||||| | |||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 1171 CATGGCCGAGTCACGTGCTCAGAATGCGCTTTCTGAGGTTCAAGAGTTTACGTCGTTTTT 1230
Query 1155 ACGGGTTTTGGGGAGTTATCCCATGGATATGACTTCTTGGTCTCCATCGTCT-------- 1206
||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1231 ACGGGTTTTGGGGAGTTATCCGATGGATATGACTTCTTGGTCACCATCGTCTTCGTCCTC 1290
Query 1207 ------A-CA---TTTTCATTGTGACAATACTAAGATCAAAACCAAAGTGAT-AATTCAA 1255
| || ||||||||||||||| |||||||||| |||||| ||| | || ||||
Sbjct 1291 TTCGTCATCAACATTTTCATTGTGACAACACTAAGATCATAACCAACGTG-TGAAGTCAA 1349
Query 1256 TTGGGAAAGTAAATTGGAGAAGAAAGTTGTAAACATAATTTTGATGAAAATAAATTATTT 1315
||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1350 TTGTGTATGTAAATTGGAGAAGAAAGTTGTAAACATAATTTTGGTGAAAATAAATTACTT 1409
Query 1316 ATTTCTCCAA-GATCAGTCTTTTGTATTTT-CTGTTTACATTAT-A--CTTTG-AGTTTC 1369
|||||||||| ||||| ||||||||||||| ||||||||||||| | ||||| ||||||
Sbjct 1410 ATTTCTCCAAAGATCAATCTTTTGTATTTTGCTGTTTACATTATTATACTTTGGAGTTTC 1469
Query 1370 GTTTGATTGTA-TTAT-TT-TGAAATTACAAGTTTTGAGCTGATTTATT 1415
||||||| ||| || | || ||||||| ||||||||||| |||||||||
Sbjct 1470 GTTTGATCGTAGTTTTATTATGAAATTGCAAGTTTTGAGTTGATTTATT 1518
Score = 255 bits (138), Expect = 6e-67
Identities = 173/190 (91%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 1 ATGAGAACTCTCTTACCTTCCCATACTCCGGCGACGGTAACAACGGCGGCGAGAAGAAGA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 41 ATGAGAACTCTCTTACCTTCCCATACTCCGGCAACGGTAACAACGGCGGCGAGAAGAAGA 100
Query 61 CACGTCATACATTGCGCCGGTAAGAGATCTGACTCGTTCTCAATTGGTTCCAGTATCTCC 120
||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||
Sbjct 101 CACGTCATACATTGCGCCGGTAAGAGATCTGACTCTTTCTCCATTAATTCCAGTAGCTCC 160
Query 121 GATTGGCAAAGCTCATGCGCTATTCTCTCTAGCAAAGTCGTTTCACAAGAACAATCCGAT 180
|||||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||
Sbjct 161 GATTGGCAAAGCTCCTGCGCCATTCTCTCAAGCAAAGTTAACTCACAAGAACAATCTGAA 220
Query 181 TCCCTAATCT 190
||| || |||
Sbjct 221 TCCTTA-TCT 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5