BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481728
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27800.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1753 0.0
AT5G27300.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 676 0.0
> AT2G27800.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:11849789-11851363 REVERSE LENGTH=1341
Length=1341
Score = 1753 bits (949), Expect = 0.0
Identities = 1204/1323 (91%), Gaps = 33/1323 (2%)
Strand=Plus/Plus
Query 13 TCTACATTTCTAGGCTCCATCTTCAGAACCGCTAAAGCACGAATTTTGATCTCACCCAAA 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 TCTACATTTCTAGGCTCCATCTTCAGAACCGCTAAAGCACGAATTTTGATCTCACCCATC 87
Query 73 GCTAGACTCTCTCTCCTAAACCCTAATTTCACTTCCTCGCGCTTCAACACTTCTTCTTCT 132
||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 88 GCTAGACGCTCTCTCCCAAGCCCTAATTTCACTTCCTCGCGCTTCCACACTTCTTCTTCT 147
Query 133 CTGCCTCAGTCTCCAATCGAAGGTTCCATTTCGAGAAGTTTTCTTCCGCAAG-A-CC-T- 188
|| | |||||||| |||||||||||| ||| | ||||||||||||||| || | || |
Sbjct 148 CTTCGTCAGTCTCGAATCGAAGGTTCTATTCCAAGAAGTTTTCTTCCG--AGCATCCATG 205
Query 189 TAGC-A-TCCATCGACG--A-T-C-T-CA--TAG-TC---TCATCG-C-TTCCACTAGTC 232
|| | | | ||| | | | | | | || | | || || ||| | || || ||
Sbjct 206 TA-CGATTTCATAG-TGTTAGTGCTTCCACTTGGTTCAGTTC-TCGACGAACCTCTTCTC 262
Query 233 AAGGTGGATTCGCATCTGTTTCTATGGATAGACAATACTCAACATCACTCCCAACACGTT 292
||||| |||| ||||||||||| ||| ||| |||||||||||| ||| ||||||||||||
Sbjct 263 AAGGTCGATTAGCATCTGTTTCCATGTATATACAATACTCAACTTCAGTCCCAACACGTT 322
Query 293 CACTTAGAAGGAGAATCAGCAATAGAAAGAAATCGAGTACGAAACCAGTCCTTAATGAAT 352
|||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |
Sbjct 323 CACTTAGAAGGAGAATCAGCAATAGAAAGAAATCGAGTGCAAAACCAATCCTTAATG--T 380
Query 353 TT--AAGTTTCAAGAAGCGATTA-CAAAGCTTCCACCAAGATTTACCCCTGAAGAACTAG 409
|| |||||||| ||| ||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 381 TTCAAAGTTTCATGAAACGA-TATCAAAGCTTCCACCAAGATTCACCCCTGAAGAACTAG 439
Query 410 CTGATGCTATAACACTTGAAGAAGACCCGTTTCTGTGTTTCCATCTCTTTAACTGGGCGT 469
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 440 CTGATGCTATAACTCTTGAAGAAGACCCGTTTCTGTGTTTCCATCTCTTTAACTGGGCAT 499
Query 470 CGCAGCAGCCAAGGTTTAAGCATGTGAATTGCTCTTACCATATCGCGATAAGGAAGCTCG 529
|||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 500 CGCAACAGCCGAGGTTTACGCATGAGAATTGCTCTTACCATATCGCGATAAGGAAGCTCG 559
Query 530 GAGCTGCGAAAATGTATAAAGAAATGGATGATATCGTGAACCAAGTACTCTCGGTTCGTC 589
| ||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||
Sbjct 560 GTGCTGCGAAAATGTATCAAGAAATGGATGATATTGTGAACCAAGTGCTCTCGGTTCGTC 619
Query 590 ATATTGGTAACGAGAATCTATACAATTCGATCATCTTCTATTTCACGAAAGCCGGGAAGT 649
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 620 ATATTGGTAACGAGAATCTTTACAATTCGATCATCTTCTATTTCACGAAAGCCGGGAAGT 679
Query 650 TGATACGTGCTGTGAATATATTTAGACACATGGTGACTAGTATGAACTTGGAATGCAGAC 709
||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 680 TGATACGCGCTGTGAATATATTTAGACATATGGTGACTAGTAAGAACTTGGAATGTAGAC 739
Query 710 CAACGATTAGAACATATCATATTCTCTTCAAAGCCTTGTTGGGTCGAGGTAACAACTCTT 769
||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 740 CAACGATTAGAACGTATCATATTCTTTTCAAAGCCTTGTTGGGTAGAGGTAACAACTCTT 799
Query 770 ACACAAGCCATATGTATATGGAGACAGTAAGATCTTTGTTTCGACAAATGGTGGATAGCG 829
||| || |||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 800 ACATAAACCATGTGTATATGGAGACAGTAAGATCTTTGTTTAGGCAAATGGTGGATAGCG 859
Query 830 GGATTGAACCAGACGTATTCGCTTTGAACTGTTTGGTTAAAGGTTACGTGCTCTCGCTTC 889
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GTATTGAACCAGACGTATTCGCTTTGAACTGTTTGGTTAAAGGTTACGTGCTCTCGCTTC 919
Query 890 ACGTCAATGATGCTCTTAGGATATTTCATCAAATGAGTGTGGTTTACAATTGCCAGCCGA 949
||||||||||||| ||||||||||||||||| ||||||||||||||| |||| | ||||
Sbjct 920 ACGTCAATGATGCACTTAGGATATTTCATCAGATGAGTGTGGTTTACGATTGTGAACCGA 979
Query 950 ATTCTTTTACTTATGATTATCTAATACATGGGTTATGTGCACAAGGTAGGACCATTAATG 1009
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 980 ATTCGTTTACTTATGATTATCTAATACATGGATTATGTGCTCAAGGTAGGACCATTAATG 1039
Query 1010 CTAGAGAGTTGCTTAATGAGATGAAAGGAAAAGGCTTTGTTCCTAATGGGAAATCATATA 1069
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1040 CTAGAGAATTGCTTAGTGAGATGAAAGGAAAAGGCTTTGTTCCTAATGGGAAATCTTATA 1099
Query 1070 ACTCTTTGGTGAATGCTTTTGCGCTTACCGGTGAAATCGATGACGCGGTGAAATGTTTGT 1129
||||| |||| |||||||||||||||| |||||| || || || || |||||||||||||
Sbjct 1100 ACTCTCTGGTTAATGCTTTTGCGCTTAGCGGTGAGATTGACGATGCAGTGAAATGTTTGT 1159
Query 1130 GGGAGATGATTGAGAACAGTCGTGTGGTTGATTTTATTA-CGTATAGAACACTTGTTGAT 1188
|||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 1160 GGGAGATGATTGAGAATGGTCGTGTGGTTGATTTTATTAGC-TATAGAACACTAGTTGAT 1218
Query 1189 GAGAGTTGTAGGAAAGGGAAGTATGATGAAGCGACGAGAGTATTGGAGATGTTGCGAGAG 1248
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1219 GAGAGTTGTAGGAAAGGGAAGTATGATGAAGCGACGAGATTGTTGGAGATGTTGCGAGAG 1278
Query 1249 AAACAGCTTGTGGATAGAGATTCTTATGAGAAGCTTGTGAATGTTCTTCACATGGATTTG 1308
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1279 AAACAGCTTGTGGATAGAGATTCTTATGATAAGCTTGTGAATGTTCTTCACAAGGATTTA 1338
Query 1309 TAG 1311
|||
Sbjct 1339 TAG 1341
> AT5G27300.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:9620810-9624990 FORWARD LENGTH=1728
Length=1728
Score = 676 bits (366), Expect = 0.0
Identities = 478/531 (90%), Gaps = 12/531 (2%)
Strand=Plus/Plus
Query 13 TCTACATTTCTAGGCTCCATCTTCAGAACCGCTAAAGCACGAATTTTGATCTCACCCA-A 71
||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 16 TCTACATTTCTAGGCTCCATCTTCAGAACCGTTAAAGCACGAGTTTTGATCCCACCCATC 75
Query 72 AGCTAGACTCTCTCTCCTAAACCCTAATTTCACTTCCTCGCGCTTCAACACTTCTTCTTC 131
| | ||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 76 A-CAAGACTCTCTCTCCCAAACCCTAATTTCACTTCCTCTCGCTTCCACACTTCTTCTTC 134
Query 132 TCTGCCTCAGTCTCCAATCGAAGGTTCCATTTCGAGAAGTTTTCTTCCGCAAGACCTTAG 191
|||||||||||||| |||||||||||||||||| | |||| ||||| ||||||||| ||
Sbjct 135 TCTGCCTCAGTCTCAAATCGAAGGTTCCATTTC--G-AGTTCTCTTCTGCAAGACCTGAG 191
Query 192 CATCCATCGACGATCTCATAGTCTCATCGCTTCCACTAGTCAAGGTGGATTCGCATCTGT 251
||| |||| | | | | || | | || |||||||||||||||||| |||| ||||||||
Sbjct 192 CAT-CATCCATGGTGTGATTG-C-GATTGCTTCCACTAGTCAAGGTCGATTAGCATCTGT 248
Query 252 TTCTATG-GATAGACAATACTCAACATCACTCCCAACACGTTCACTTAGAAGGAGAATCA 310
||| ||| | || |||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 249 TTCCATGTG-TACACAATACTCAACTTCAGTCCCAACACGTTCACTTAGAAGGAGAATCA 307
Query 311 GCAATAGAAAGAAATCGAGTACGAAACCAGTCCTTAATGAATTTAAGTTTCAAGAAGCGA 370
||| |||||||||||||||||| |||||| |||||||||||| |||||||||||| |||
Sbjct 308 GCAGTAGAAAGAAATCGAGTACAAAACCAATCCTTAATGAATCAAAGTTTCAAGAAACGA 367
Query 371 TTA-CAAAGCTTCCACCAAGATTTACCCCTGAAGAACTAGCTGATGCTATAACACTTGAA 429
|| ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 368 -TATCAAAGCTTCCACCAAGATTCACACCTGAAGAACTAGCTGATGCTATAACTCTTGAA 426
Query 430 GAAGACCCGTTTCTGTGTTTCCATCTCTTTAACTGGGCGTCGCAGCAGCCAAGGTTTAAG 489
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
Sbjct 427 GAAGACCCGTTTCTGTGTTTCCATCTCTTTAACTGGGCATCGCAACAGCCGAGGTTTACG 486
Query 490 CATGTGAATTGCTCTTACCATATCGCGATAAGGAAGCTCGGAGCTGCGAAA 540
|||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 487 CATGAGAATTGCTCTTACCATATCGCGATAAGGAAGCTCGGTGCTGCGAAA 537
Score = 425 bits (230), Expect = 4e-118
Identities = 273/294 (93%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 992 AAGGTAGGACCATTAATGCTAGAGAGTTGCTTAATGAGATGAAAGGAAAAGGCTTTGTTC 1051
||||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 767 AAGGTAGGACCATCAATACTAGAGAATTGCTTAGTGAGATGAAAGGAAAAGGCTTTGTTC 826
Query 1052 CTAATGGGAAATCATATAACTCTTTGGTGAATGCTTTTGCGCTTACCGGTGAAATCGATG 1111
||||||||||||| ||||||||| |||| |||||||||||||||| ||||| || ||||
Sbjct 827 CTAATGGGAAATCTTATAACTCTCTGGTTAATGCTTTTGCGCTTAGTGGTGAGATTGATG 886
Query 1112 ACGCGGTGAAATGTTTGTGGGAGATGATTGAGAACAGTCGTGTGGTTGATTTTATTACG- 1170
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 887 ATGCGGTGAAATGTTTGTGGGAGATGATTGAGAATGGTCGTGTGGTTGATTTTATTA-GC 945
Query 1171 TATAGAACACTTGTTGATGAGAGTTGTAGGAAAGGGAAGTATGATGAAGCGACGAGAGTA 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 946 TATAGAACACTTGTTGATGAGAGTTGTAGGAAAGGGAAGTATGATGAAGCGACGAGATTG 1005
Query 1231 TTGGAGATGTTGCGAGAGAAACAGCTTGTGGATAGAGATTCTTATGAGAAGCTT 1284
|||||||||||||||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 1006 TTGGAGATGTTGCGAGAGAAACAGCTTGTGGATATAGATTCTGATGATAAGCTT 1059
Score = 348 bits (188), Expect = 9e-95
Identities = 222/239 (93%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 635 CGAAAGCCGGGAAGTTGATACGTGCTGTGAATATATTTAGACACATGGTGACTAGTATGA 694
||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 533 CGAAATCTGGGAAGTTGATACGTGCTGTGAATATATTTAGACATATGGTGAATAGTAGGA 592
Query 695 ACTTGGAATGCAGACCAACGATTAGAACATATCATATTCTCTTCAAAGCCTTGTTGGGTC 754
|||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 593 ACTTGGAATGTAGACCAACGATGAGAACGTATCATATTCTCTTCAAAGCATTGTTGGGTA 652
Query 755 GAGGTAACAACTCTTACACAAGCCATATGTATATGGAGACAGTAAGATCTTTGTTTCGAC 814
||||||||||||||| || || |||| |||||||||||||||||||||||||||||||||
Sbjct 653 GAGGTAACAACTCTTTCATAAACCATCTGTATATGGAGACAGTAAGATCTTTGTTTCGAC 712
Query 815 AAATGGTGGATAGCGGGATTGAACCAGACGTATTCGCTTTGAACTGTTTGGTTAAAGGT 873
||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 713 AAATGGTGGATAGTGGTATTGAACCAGACGTATTTGCTTTGAACTGTTTGGTTAAAGGT 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5