BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481735
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27780.1 | Symbols: | Transcription factor IIS family prote... 767 0.0
AT2G13640.1 | Symbols: | Transcription factor IIS family prote... 767 0.0
AT5G27310.1 | Symbols: | Transcription factor IIS family prote... 750 0.0
> AT2G27780.1 | Symbols: | Transcription factor IIS family protein
| chr2:11845472-11846578 REVERSE LENGTH=1107
Length=1107
Score = 767 bits (415), Expect = 0.0
Identities = 529/581 (91%), Gaps = 19/581 (3%)
Strand=Plus/Plus
Query 364 TCGGAGTTGAAGATGAAGAAAGAAGATGAGAGATCATTAACTCGTGAAACAGAGAAGATT 423
||||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 499 TCGGAGTTG-A-AT-AAGAAAGAAGATCAGAGATCATTAACTCGTGAAACAGAGAAGATT 555
Query 424 CAAGCAAGGAACAGCTTTTTGGCGTTGAAGCAGAAAGAGGATCATAAAGCTAAGGCTTGT 483
|||||||||||||||||||||| ||||| |||||||||||||||||| || || |||||
Sbjct 556 AAAGCAAGGAACAGCTTTTTGGCTTTGAAACAGAAAGAGGATCATAAATCTGAGACTTGT 615
Query 484 GACGAGAAATATGTTAAGAAAGAGACAAAGACCAATCTAAAGCCGCTCAACGTGAAGACA 543
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 616 GACGAGAAATATTTTAAGAAAGAGACAAAGACCAATCTAAAACCGCTCAACATGAAGACA 675
Query 544 AGACGTGTCGCTTTGGAGGATGTTACGACCAAGAAGCCACGTGAAGATGTACTAAGTTCT 603
|| |||||| |||||| ||||||||| || |||||||||| |||||||| ||||
Sbjct 676 AGGCGTGTCTCTTTGGTGGATGTTACAACGAAGAAGCCACATGAAGATG------GTTC- 728
Query 604 GGTTCATGTATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAAAAGAAAGTGGATGAG 663
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 729 --AT--TG-ATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGATGAG 783
Query 664 ATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAATGCTAAGGGCGTT 723
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 784 ATGGTGAAGTTGTTTGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGAGTA 843
Query 724 CTCTCAGGTAAAGCAGAGGCGTCTCGCTGCGTTGACGCTCTCTCGTTACTGATGGAA-AT 782
|| || |||||||||||||||||||||||| |||||||||||||| || |||| ||| ||
Sbjct 844 CTTTCTGGTAAAGCAGAGGCGTCTCGCTGCATTGACGCTCTCTCGGTATTGAT-GAAGAT 902
Query 783 CAATATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 842
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 CAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 962
Query 843 AAAACATAAAGACCGCAAGATTTGCCATGCTGCATCAGCCCTTCTTCACCTTTGGAGACA 902
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 963 AAAACATAAAGACCGCATGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGACA 1022
Query 903 GAGAATCAGAGAACAAGAACGTAAAGAGTCATCT-ACCAAG 942
||| ||||||||||||||||||||| |||| | | ||||||
Sbjct 1023 GAGGATCAGAGAACAAGAACGTAAAAAGTC-TGTTACCAAG 1062
Score = 518 bits (280), Expect = 5e-146
Identities = 349/381 (92%), Gaps = 9/381 (2%)
Strand=Plus/Plus
Query 10 AAGAACGAAGAGAAGATGAGAGTAAGGATTGCGAAGGAGAGATCTGACTTATGCGACTGG 69
||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||| |
Sbjct 4 AAGAACGAAGAAAAGATGAGAGTGAGAATTGCGAAGGAGAGATCTGACTTGTGCGACTTG 63
Query 70 ACTGCTGCTGCAATTAAGGCTACTTACAACACACGGAACCCATGCGAAGTCGAGAGATGC 129
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 64 ACTGCTGCTGCAATTAAGGCTACTTACAATACACGGAACCCATGCGAAGTCGAGCGATGC 123
Query 130 ATCGATGTGTTGAAGCACTTGAAGTCTCTGTCTCTTTCCGCGAAGGATATA-GAATTGTC 188
||||| |||||||| ||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 124 ATCGACGTGTTGAATCACTTGAAGTCTCTGTCTCTTTCCGTGAAGGATATACG-ATTGTC 182
Query 189 TGAATCAATAGTTAAGCTGGAGACTTTGAGAAGCCATAGGAACCCTAGGATCCGTAAGGA 248
|||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct 183 TGAATCAATAGTTAAGTTGGAGACTTTGAGAAGTCATAGGAACCCTAGAATCCGTAAGGC 242
Query 249 AGCTCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACACACACGGAAGCGACAACTC 308
||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 243 AGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACGCACATGGAAGCGACAACTC 302
Query 309 TTTCGA---TG-T-T-ACCAAGGCTCGTTTGAAGACGAAGAAGCATGTTCTAACAAGGTG 362
|||| | || | | ||||||| |||| |||||| | ||||||||||||||||||||||
Sbjct 303 TTTCAAAGCTGCTCTTACCAAGGATCGTCTGAAGATGGAGAAGCATGTTCTAACAAGGTG 362
Query 363 TTCGGAGTTGAAGATG-AAGA 382
|||||||||||||| | ||||
Sbjct 363 TTCGGAGTTGAAGAAGGAAGA 383
> AT2G13640.1 | Symbols: | Transcription factor IIS family protein
| chr2:5686136-5687290 REVERSE LENGTH=1155
Length=1155
Score = 767 bits (415), Expect = 0.0
Identities = 529/581 (91%), Gaps = 19/581 (3%)
Strand=Plus/Plus
Query 364 TCGGAGTTGAAGATGAAGAAAGAAGATGAGAGATCATTAACTCGTGAAACAGAGAAGATT 423
||||||||| | || | |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 505 TCGGAGTTG-A-AT-AGGAAAGAAGATCAGAGATCATTAACTCGTGAAACAGAGAAGAAT 561
Query 424 CAAGCAAGGAACAGCTTTTTGGCGTTGAAGCAGAAAGAGGATCATAAAGCTAAGGCTTGT 483
|||||||||||||||||||||| ||||| |||||||||||||||| | || || |||||
Sbjct 562 AAAGCAAGGAACAGCTTTTTGGCTTTGAAACAGAAAGAGGATCATAGATCTGAGACTTGT 621
Query 484 GACGAGAAATATGTTAAGAAAGAGACAAAGACCAATCTAAAGCCGCTCAACGTGAAGACA 543
| |||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 622 GTCGAGAAATATTTTAAGAAAGAGACAAAGACCAATCTAAAGCAGCTCAACATGAAGACA 681
Query 544 AGACGTGTCGCTTTGGAGGATGTTACGACCAAGAAGCCACGTGAAGATGTACTAAGTTCT 603
|| |||||| |||||||||||||||| || |||||||||| |||||||| ||||
Sbjct 682 AGGCGTGTCTCTTTGGAGGATGTTACAACGAAGAAGCCACATGAAGATG------GTTC- 734
Query 604 GGTTCATGTATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAAAAGAAAGTGGATGAG 663
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 735 --AT--TG-ATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGATGAG 789
Query 664 ATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAATGCTAAGGGCGTT 723
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 790 ATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGTGTT 849
Query 724 CTCTCAGGTAAAGCAGAGGCGTCTCGCTGCGTTGACGCTCTCTCGTTACTGATGGAA-AT 782
|||||||||||| |||||| |||||||||| ||||||||||||||||| |||| ||| ||
Sbjct 850 CTCTCAGGTAAACCAGAGGTGTCTCGCTGCATTGACGCTCTCTCGTTATTGAT-GAAGAT 908
Query 783 CAATATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 842
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 CAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 968
Query 843 AAAACATAAAGACCGCAAGATTTGCCATGCTGCATCAGCCCTTCTTCACCTTTGGAGACA 902
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 969 AAAACATAAAGATCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGACA 1028
Query 903 GAGAATCAGAGAACAAGAACGTAAAGAGTCATCT-ACCAAG 942
||| ||||||||||||||||||||| |||| | | ||||||
Sbjct 1029 GAGGATCAGAGAACAAGAACGTAAAAAGTC-TGTTACCAAG 1068
Score = 520 bits (281), Expect = 1e-146
Identities = 360/396 (91%), Gaps = 14/396 (4%)
Strand=Plus/Plus
Query 4 ATGATCAAGAACGA---AGAGAAGATGAGAGTAAGGATTGCGAAGGAGAGATCTGACTTA 60
|||||||||||||| | ||| ||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGATCAAGAACGACGGAAAGATGATGAGAGTGAGAATTGCGAAGGAGAGATCTGACTTA 60
Query 61 TGCGACTGGACTGCTGCTGCAATTAAGGCTACTTACAACACACGGAACCCATGCGAAGTC 120
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TGCGACTTGACTGCTGCTGCAATTAAGGCTACTTACAATACACGGAACCCATGCGAAGTC 120
Query 121 GAGAGATGCATCGATGTGTTGAAGCACTTGAAGTCTCTGTCTCTTTCCGCGAAGGATATA 180
||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 121 GAGCGATGCATCGATGTGTTGAATCACTTGAAGTCTCTGTCTCTTTCCGTGAAGGATATA 180
Query 181 -GAATTGTCTGAATCAATAGTTAAGCTGGAGACTTTGAGAAGCCATAGGAACCCTAGGAT 239
| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 181 CG-ATTGTCTGAATCAATAGTTAAACTGGAGACTTTGAGAAGTCATAGGAACCCTAGAAT 239
Query 240 CCGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACACACACGGAAG 299
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 240 CCGTAAGGAAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACGCACATGGAAG 299
Query 300 CGACAACTCTTTCG-A--TG-T-T-ACCAAGGCTCGTTTGAAGACGAAGAAGCATGTTCT 353
||||||||||||| | || | | ||||| | |||| |||||| |||||||||||||||
Sbjct 300 CGACAACTCTTTCACAGCTGCTCTTACCAAAGATCGTCTGAAGATGAAGAAGCATGTTCT 359
Query 354 AACAAGGTGTTCGGAGTTGAAGATGAAGAAAGAAGA 389
|| || ||||||||||||||||| | |||||||||
Sbjct 360 AAAAATGTGTTCGGAGTTGAAGA--A-GAAAGAAGA 392
> AT5G27310.1 | Symbols: | Transcription factor IIS family protein
| chr5:9625449-9626561 FORWARD LENGTH=1113
Length=1113
Score = 750 bits (406), Expect = 0.0
Identities = 526/581 (91%), Gaps = 19/581 (3%)
Strand=Plus/Plus
Query 364 TCGGAGTTGAAGATGAAGAAAGAAGATGAGAGATCATTAACTCGTGAAACAGAGAAGATT 423
||||||||| | || |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 505 TCGGAGTTG-A-AT-AAGAAAGAAGATCAGAGATCATTAACTCGTGAAACAGAGATGATA 561
Query 424 CAAGCAAGGAACAGCTTTTTGGCGTTGAAGCAGAAAGAGGATCATAAAGCTAAGGCTTGT 483
|||||||||||||||||||||| ||||| |||||||||||||||||| || || |||||
Sbjct 562 AAAGCAAGGAACAGCTTTTTGGCTTTGAAACAGAAAGAGGATCATAAATCTGAGACTTGT 621
Query 484 GACGAGAAATATGTTAAGAAAGAGACAAAGACCAATCTAAAGCCGCTCAACGTGAAGACA 543
|||||||||||| ||||||||||||||||||| ||||| ||||| |||||| ||||||||
Sbjct 622 GACGAGAAATATTTTAAGAAAGAGACAAAGACTAATCTTAAGCCACTCAACATGAAGACA 681
Query 544 AGACGTGTCGCTTTGGAGGATGTTACGACCAAGAAGCCACGTGAAGATGTACTAAGTTCT 603
|| ||||| |||||||||||||||| || |||||||||| |||||||| ||||
Sbjct 682 AGGTGTGTCTCTTTGGAGGATGTTACAACGAAGAAGCCACATGAAGATG------GTTC- 734
Query 604 GGTTCATGTATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAAAAGAAAGTGGATGAG 663
| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 735 --AT--TG-ATAAAGAAGACTAAAACCGAAAAGGAGCTGAAGAACAAGAAAGTGGATGAG 789
Query 664 ATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAATGCTAAGGGCGTT 723
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 790 ATGGTGAAGTTGTTTGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGTGTT 849
Query 724 CTCTCAGGTAAAGCAGAGGCGTCTCGCTGCGTTGACGCTCTCTCGTTACTGATGGAA-AT 782
|||||||||||| ||||||||||||||||| || |||||||||||||| |||| ||| ||
Sbjct 850 CTCTCAGGTAAACCAGAGGCGTCTCGCTGCATTAACGCTCTCTCGTTATTGAT-GAAGAT 908
Query 783 CAATATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 842
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 909 CAACATTACTCCAAAACCAAAAGAACCAAGGAGTATGATGGATAAGCTTGAGGGACTTAC 968
Query 843 AAAACATAAAGACCGCAAGATTTGCCATGCTGCATCAGCCCTTCTTCACCTTTGGAGACA 902
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 969 AAAACATAAAGACCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGACA 1028
Query 903 GAGAATCAGAGAACAAGAACGTAAAGAGTCATCT-ACCAAG 942
||| ||||||||||||||||||||| |||| | | ||||||
Sbjct 1029 GAGGATCAGAGAACAAGAACGTAAAAAGTC-TGTTACCAAG 1068
Score = 527 bits (285), Expect = 8e-149
Identities = 356/389 (92%), Gaps = 10/389 (3%)
Strand=Plus/Plus
Query 4 ATGATCAAGAACGA---AGAGAAGATGAGAGTAAGGATTGCGAAGGAGAGATCTGACTTA 60
|||||||||||||| | ||| ||||||||| || ||||| ||||||||||||||||||
Sbjct 1 ATGATCAAGAACGACGGAAAGATGATGAGAGTGAGAATTGCCAAGGAGAGATCTGACTTA 60
Query 61 TGCGACTGGACTGCTGCTGCAATTAAGGCTACTTACAACACACGGAACCCATGCGAAGTC 120
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TGCGACTTGACTGCTGCTGCAATTAAGGCTACTTACAATACACGGAACCCATGCGAAGTC 120
Query 121 GAGAGATGCATCGATGTGTTGAAGCACTTGAAGTCTCTGTCTCTTTCCGCGAAGGATATA 180
||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 121 GAGCGATGCATCGATGTGTTGAATCACTTGAAGTCTCTGTCTCTTTCCGTTAAGGATATA 180
Query 181 GAATTGTCTGAATCAATAGTTAAGCTGGAGACTTTGAGAAGCCATAGGAACCCTAGGATC 240
|| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 181 GAGTTGTCTGAATCAATAGTTAAACTGGAGACTTTGAGAAGTCATAGGAACCCTAGAATC 240
Query 241 CGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACACACACGGAAGC 300
||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 241 CGTAAGGAAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACGCACATGGAAGC 300
Query 301 GACAACTCTTTC---GATG---TTACCAAGGCTCGTTTGAAGACGAAGAAGCATGTTCTA 354
|||||||||||| | || ||||||||| |||| |||||| ||||||||||||||||
Sbjct 301 GACAACTCTTTCAAAGCTGCTCTTACCAAGGATCGTCTGAAGATGAAGAAGCATGTTCTA 360
Query 355 ACAAGGTGTTCGGAGTTGAAGATG-AAGA 382
|||||||||||||||||||||| | ||||
Sbjct 361 ACAAGGTGTTCGGAGTTGAAGAAGGAAGA 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5