BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481736

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27775.2 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   392    2e-108


> AT2G27775.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 
13 growth stages; BEST Arabidopsis thaliana protein match 
is: Tetratricopeptide repeat (TPR)-like superfamily protein 
(TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 
5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; 
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr2:11842735-11843293 REVERSE LENGTH=462
Length=462

 Score =  392 bits (212),  Expect = 2e-108
 Identities = 265/290 (91%), Gaps = 6/290 (2%)
 Strand=Plus/Plus

Query  1    AGAATCGGAGAAAATGGCTGCAATTGGGATCGCTTCTAGGTCTACTACATTCATGAGATC  60
            ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct  27   AGAATCGGAGAAAATGGCTGCAATTGGCATCGCCTCTAGGTCTGCTACATTCATGAGATC  86

Query  61   CATCCATAGAACCGCTGCTACACGAAATTTGATCTCATCCAGATCTAAACCCTCCGTCCC  120
            |||| ||||||| ||| || ||||||||||||||||||||||| ||| ||| || || ||
Sbjct  87   CATCAATAGAACAGCTACTGCACGAAATTTGATCTCATCCAGAGCTAGACCTTCTGTACC  146

Query  121  AAACCCTAATTTCACTTCCCCGCGCTTCAACACTTCTTCTCGCATCGAAGGCTCTGTTCC  180
            |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  147  AAACCCTAATTTCACTTCCCCGCGCTTCAACACTTCTTCTCGAATCGAAGGTTCTGTTCC  206

Query  181  CA-GTCTGCTTG-GGAGAGAATTAAGCACACAACAACCATTTCACAGC-CTCGTTGCTGC  237
            || || ||| || || |||||||||||||||||||||||||||||||| | | |||||||
Sbjct  207  CAGGT-TGC-TGCGGCGAGAATTAAGCACACAACAACCATTTCACAGCAC-CATTGCTGC  263

Query  238  AGCTTGCCTTGTTTCGAAACTTCCTTCTGATGTCACTTCTTATGAAGGTA  287
            ||||||||| ||||||||||||||||||||||||||||||  ||||||||
Sbjct  264  AGCTTGCCTCGTTTCGAAACTTCCTTCTGATGTCACTTCTCCTGAAGGTA  313



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27126439380


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5