BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481737
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27770.1 | Symbols: | Plant protein of unknown function (DU... 2150 0.0
> AT2G27770.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr2:11832809-11834369 REVERSE LENGTH=1561
Length=1561
Score = 2150 bits (1164), Expect = 0.0
Identities = 1439/1559 (92%), Gaps = 69/1559 (4%)
Strand=Plus/Plus
Query 1 CTTAGCACACACATAGAGA-CTCTAATCCATTTTtctctctctctctctctctc-tTAAA 58
||||||||||||| ||||| || ||||||| |||||||||||| ||||||||| || ||
Sbjct 1 CTTAGCACACACACAGAGACCT-TAATCCA--TTTCTCTCTCTCCCTCTCTCTCATT-AA 56
Query 59 GCaaaaaaaaaaagagagaataagaggagaaataaaaagaaagcaacct-aaatccttaa 117
| |||||||| ||||||| |||| ||||||||||||||||||| || ||||| ||||
Sbjct 57 G----AAAAAAAA-AGAGAATCAGAGAAGAAATAAAAAGAAAGCAA-CTCAAATCTTTAA 110
Query 118 cctacaaaaaCCCAGATTTGTT-ACTCTCTCATTCTTCTTCTTCTTCT---CAACATTTG 173
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 111 CCTACAAAAACCCAGATTTGTTAACTCTCTCATTCTTCTTCTTCTTCTCAACAACATTTG 170
Query 174 ATC-TTTTGATTCTCAAAG---T-T-aaa--aaaaaaaaaaCACACTTTGTTGTCTCAAG 225
||| ||||||||||||||| | | ||| |||| | |||||||||||||||||||||
Sbjct 171 ATCTTTTTGATTCTCAAAGTATTCTCAAAGTAAAAGAGAAACACACTTTGTTGTCTCAAC 230
Query 226 AATCAAACAAACAAAACCCATCTTGGGAAAATCTCATTTCTTTCCCAAGAAAATATCTCT 285
|| ||| |||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 231 AAGCAAGCAAACAAAACCCATCTTGGGAAAATCTCATTTCTTTCCCAAG-AAA-A--TCT 286
Query 286 CTTTTTATTTTGTTACAA--TTTTCCCAAAAAAGATGAGAGATTTGGTGTCATGTTTCAG 343
| |||| || |||||||| |||||| || ||| ||||||||||||||||||||||||||
Sbjct 287 CATTTT-TTCTGTTACAATTTTTTCCTAAGAAA-ATGAGAGATTTGGTGTCATGTTTCAG 344
Query 344 CGAGAACTCAATAAACGTGACACATCCATTATCAATATCATCTTCATCATCATCATGTTC 403
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 345 TGAGAACTCAATAAACGTGACACATCCCTTATCAATATCATCTTCATCATCATCATGTTC 404
Query 404 AAAATACAGTACCAACAATGTTTGTATCTCACCATCTCT-ATTACCATCAACACAAACCT 462
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 405 AAAATACAGTACCAACAATGTTTGTATCTCACCATCTCTCA-TACCATCAATACAAACCT 463
Query 463 CCATTACAAGCATCTACAGAATCACTTTATCGAAACATCTCATCATCAAAGTCACATGGT 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CCATTACAAGCATCTACAGAATCACTTTATCGAAACATCTCATCATCAAAGTCACATGGT 523
Query 523 GTAATCCACACAACAACAATGGCTTAAGCATCTCTGTTTCTTCCGCAGATCAAAACCCTT 582
| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 524 GCAATCCACACAACAACAATGGCTTAAGCATCTCTGTTGCATCCGCAGATCAAAACCCTT 583
Query 583 CAACAACTCTCAAACTCAACACTTCTTCTCGTTTCTTCCGTAAGAAGAAAGGTAACAAAT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 CAACAACTCTCAAACTCAACACTTCTTCTCGTTTCTTCCGTAAGAAGAAAGGTAACAAAT 643
Query 643 CAGTCGACTCCGATCTCGGTAAAATCGAGGTTTTTTGGGATCTTTCTTCTGCTAAATACG 702
| || || ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 644 CGGTTGATTCCGATCTCGGTAAAATCGAGGTTTTTTGGGATCTTTCTTCAGCTAAATATG 703
Query 703 ATTCAAACTTGTCTGGTCCTGAACCTATCAATGGCTTCTACGTTATCGTCCTCGTTGATG 762
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ATTCTAACTTGTGTGGTCCTGAACCTATCAATGGCTTCTACGTTATCGTCCTCGTTGATG 763
Query 763 CTCAATTGGGTCTTCTTCTAGGAGATTCATCTGAAGAAACCCTCCGTAAAAAGGGTTTCT 822
|||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 764 GTCAAATGGGTCTTCTTCTTGGAGATTCATCTGAAGAAACTCTCCGTAAAAAAGGTTTCT 823
Query 823 CCGGCGATATCGGTTTCGAGTTCTCTCTTGTTTCTCGACAAGAACATTTCACAGGGAACA 882
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CCGGCGATATCGGTTTCGATTTCTCTCTTGTTTCTCGACAAGAACATTTCACAGGGAACA 883
Query 883 ACACTTTTTACTCAACTAAAGCT-AGATTCGTTGAAACAGGAGATTCACATGAAATCGTC 941
| ||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 884 ATACTTTTTACTCGACTAAAG-TAAGATTCGTTGAGACAGGAGATTCACATGAAATCGTC 942
Query 942 ATCAGATGTAATAAAGAAACAGAGGGTTTAAAACAGAGCACTCATTACCCTGTTCTCTCT 1001
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 943 ATCAGATGTAATAAAGAAACAGAGGGTCTAAAACAGAGCAATCATTACCCTGTTCTCTCT 1002
Query 1002 GTTTGTATTGATAAGAAGACGGTGATAAAAGTGAAGAGGCTTCAATGGAATTTTAGAGGG 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1003 GTTTGTATTGATAAGAAGACGGTGATAAAAGTGAAGAGGCTTCAATGGAATTTCAGAGGG 1062
Query 1062 AATCAGACGATTTTCTTGGATGGATTGCTTGTAGATCTAATGTGGGATGTTCATGATTGG 1121
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1063 AATCAAACGATTTTCTTGGATGGATTGCTTGTGGATCTGATGTGGGATGTTCATGATTGG 1122
Query 1122 TTCTTTAGTAATCAAGGAGCTTGTGGAAGAGCTGTGTTCATGTTTAGGACAAGGAATGGT 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TTCTTTAGTAATCAAGGAGCTTGTGGAAGAGCTGTGTTCATGTTTAGGACAAGGAATGGT 1182
Query 1182 TTAGACAGTAGCAGGCTTTGGTTAGAAGAGAAGATGGTTAAGAAAGATGAACAACAAGAC 1241
|||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1183 TTAGACAGCAGCAGGCTTTGGTTAGAAGAGAAGATTGTTAAGAAAGAT---CAACAAGAC 1239
Query 1242 AAGCTTGACTTCTCTCTCCTCATTTACGCCTGTAAGACTTGaaaaaca--a-aaaagaaa 1298
|||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||
Sbjct 1240 AAGCTTGACTTCTCTCTCTTCATTTACGCCTGTAAGACTTGAAAAACATTATAAAA-AAA 1298
Query 1299 aaaCTCAAtttttttttGTTTTGAGATTTACAAGAAAA-GGTTATTGATTGATTGATTCT 1357
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1299 AAACTCAATTTTTTTTTG-----AGATTTACAAGAAAAAGGTTATTGATTGATTGATTCT 1353
Query 1358 Gtttttaatatttgggat-tttt-at----ttttttt-------GAACTTACAATTTCTT 1404
|||||||||||||| ||| |||| || ||||||| ||||||||||||||||
Sbjct 1354 GTTTTTAATATTTGAGATATTTTTATGGGGTTTTTTTTTTTTTTGAACTTACAATTTCTT 1413
Query 1405 CTTGGGAGGAGTATAGATTTGATTT-CTTA-TTACATTCTTTTCttttttt--ttG-AGT 1459
|||||||||||||||||||| |||| ||| |||||||||||| ||||||| ||| |||
Sbjct 1414 CTTGGGAGGAGTATAGATTTTATTTTCTTTCTTACATTCTTTTTTTTTTTTGGTTGGAGT 1473
Query 1460 TGTGATTTAGTACTGAGAGATTCCAAAA-ATGTGAATTTCTTCATAGGAGTTGTTGTTT 1517
||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1474 TGTGATTTAATATTGAGAGATTCCAAAAGATGTGAATTTCTTCATAGGAGTTGTTGTTT 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5