BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481739
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27740.1 | Symbols: | Family of unknown function (DUF662) ... 1057 0.0
> AT2G27740.1 | Symbols: | Family of unknown function (DUF662)
| chr2:11822732-11823732 FORWARD LENGTH=750
Length=750
Score = 1057 bits (572), Expect = 0.0
Identities = 660/701 (94%), Gaps = 11/701 (2%)
Strand=Plus/Plus
Query 24 ATTTAGGAAGAGAAAAAGGATCTGAGAAACAATGGCAACGACAAGACAGATCTTGGAACA 83
||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct 38 ATTGAGGAAGAGAAAAAGGATCTGAGGAACAATGGCTACGACAAGACAGATCTTGGAGCA 97
Query 84 GCCACAATCGCCATTGATGCAACGCATCAAGAGCTCGGGGAACATTAGCATGAACGGCAG 143
||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 98 GCCACAATCGCCATTTATTCAACGTATCAAGAGCTCGGGGAACATTAGCATGAATGGCAG 157
Query 144 TCCTATGATTGATGACAAAGAAGAGGAGCTTTCACAGTCTGCTTTTGCTTTGTTTAAGGC 203
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 TCCTATGATTGATGAGAAAGAAGAGGAGCTTTCACAGTCTGCTTTTGCTTTGTTTAAGGC 217
Query 204 AAAAGAAGATGAGATTGAGAGGAGGAAGATGGAGGTTAAAGATAGGGTCCAGACAAAGCT 263
||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 218 AAAGGAAGATGAGATTGAGAGGAGGAAGATGGAGGTTAAGGATAGGGTCCAGAAAAAGCT 277
Query 264 TGGACTCGCTGAGGAAGCTACTAGAAGATTAGCCGAGATTCGGGAAGAACTGGAAGCTCT 323
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 278 TGGACTCGCTGAGGAAGCTACTAGAAGATTAGCCGAGATTCGGGAAGAGCTTGAAGCTCT 337
Query 324 TACTGATCCAATGAGAAAAGAGATATCCGCGATAAGGAAAAGAGTCGATGCTATTAACCG 383
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TACCGATCCAATGAGAAAAGAGATATCCGCGATAAGGAAAAGAGTCGATGCTATTAACCG 397
Query 384 GGAACTTAAGCCTTTAGGACAGAGTTGTCAGAGAAAGGAGAGAGAATTCAAAGAAGCGCT 443
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 398 AGAACTCAAGCCTTTAGGACAGAGTTGTCAGAGAAAGGAGAGAGAATTCAAAGAAGCACT 457
Query 444 TGAAGCTTACAATGAAAAGAACAAAGAGAAAGCTATATTTGTTAGCAAGCTAGTTGAGCT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TGAAGCTTACAATGAAAAGAACAAAGAGAAAGCTATATTTGTTAGCAAGCTAGTTGAGCT 517
Query 504 GGTTACCGAAAGCGAGAAACTGCGGATGACAAAGCTAGAGGAACTCAGCAAAAGCATTGA 563
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 518 GGTCACCGAAAGCGAGAAACTGCGGATGACAAAGCTGGAGGAACTCAGCAAAAGCATTGA 577
Query 564 AATATCGCTACGCTAACACAAGATGA-A--------GGCTATAAAAGCAGCCAActttaa 614
||||||||||||||||||||| |||| | |||| ||||||||||| ||||
Sbjct 578 AATATCGCTACGCTAACACAAAATGATAACAATAAAGGCTGCAAAAGCAGCCAGCTTTGG 637
Query 615 tttcttctttcttcttcgctttttaattgtttgattcgatatttgcttttctG-TGTGAT 673
||||||||||||||| | |||| ||||||||||||||||||||||||||| || ||||||
Sbjct 638 TTTCTTCTTTCTTCTGCTCTTTGTAATTGTTTGATTCGATATTTGCTTTT-TGGTGTGAT 696
Query 674 CAAATCTGTTTTCCTGATTCAGTAACCTTAGAAGAAATGTG 714
||||||||||||||||||||||||||||||| |||||||||
Sbjct 697 CAAATCTGTTTTCCTGATTCAGTAACCTTAGTAGAAATGTG 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5