BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481753
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27600.1 | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase fam... 2844 0.0
AT1G08270.2 | Symbols: | CONTAINS InterPro DOMAIN/s: MIT (Inte... 394 2e-108
AT2G27610.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 122 8e-27
> AT2G27600.1 | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase family
protein | chr2:11781038-11783992 FORWARD LENGTH=1758
Length=1758
Score = 2844 bits (1540), Expect = 0.0
Identities = 1697/1769 (96%), Gaps = 26/1769 (1%)
Strand=Plus/Plus
Query 1 ATCGCTTTGCATAAtccattccttcttctccatccccttcctctc-tctccttcctccga 59
||||||||||||||||||||||||||||| | | ||| ||| | ||||||||||||||
Sbjct 1 ATCGCTTTGCATAATCCATTCCTTCTTCT-C-T---CTT-CTC-CATCTCCTTCCTCCGA 53
Query 60 tcttcttcttcaatttggaatctt-ctcATCACGATTTCAAACCTCCATCGATCCTTGAT 118
||||| ||| ||||| |||||||| || ||||| ||||||| |||| | | |||||||
Sbjct 54 TCTTCGTCTCCAATTCGGAATCTTCCT-ATCACAATTTCAAGGCTCCTTTAACCCTTGAT 112
Query 119 CATCACCGATTCAATCAATTTGGAATCACAATTTCAAATCGAGAGAATTTCAATTTCTCT 178
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 113 CATCACCGATTCAATCAATTCGGAATCACAATTTCAAATCGAGAGAATTTCAATTTCTCT 172
Query 179 GGTAAAACCCTAAAATTATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAGC 238
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TGTAAAACCCT-AAATTATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAGC 231
Query 239 AAGCGGTTCATGAAGACAATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AAGCGGTTCATGAAGACAATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACG 291
Query 299 CGCTTGAGTACTTCAAAACTCATCTCAAGTATGAGAAGAACCCTAAGATCAGAGAAGCTA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CGCTTGAGTACTTCAAAACTCATCTCAAGTATGAGAAGAACCCTAAGATCAGAGAAGCTA 351
Query 359 TTACCCAGAAATTCACCGAGTATCTTCGTCGTGCTGAGGAGATCCGTGCTGTTCTCGATG 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 352 TTACCCAGAAATTCACCGAGTATCTCCGTCGTGCTGAGGAGATCCGTGCTGTTCTCGATG 411
Query 419 AAGGTGGATCGGGTCCAGGATCTAACGGTGACGCTGCGGTTGCAACGAGG-CCAAAGACT 477
||||||||||||||||||||||||||||||| || || || ||||||||| ||||| |||
Sbjct 412 AAGGTGGATCGGGTCCAGGATCTAACGGTGATGCAGCCGTCGCAACGAGGCCCAAA-ACT 470
Query 478 AAGCCCAAAGATGGAGAAGGTGGTGGTAAAGATGGAGAAGATCCTGAGCAATCGAAGCTT 537
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 471 AAGCCTAAAGATGGAGAAGGTGGTGGTAAAGATGGAGAAGATCCTGAACAATCAAAGCTT 530
Query 538 CGAGCTGGGTTAAACTCTGCTATTGTTAGGGAGAAACCTAATATCAAGTGGTCTGATGTT 597
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 531 CGAGCTGGGTTAAACTCTGCGATTGTTAGAGAGAAACCTAATATCAAGTGGTCAGATGTT 590
Query 598 GCTGGGCTTGAAAGTGCTAAACAAGCTTTGCAGGAAGCTGTGATTTTGCCTGTTAAGTTT 657
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 591 GCTGGGCTTGAAAGTGCTAAACAAGCTCTGCAGGAAGCTGTGATTTTGCCTGTCAAGTTT 650
Query 658 CCACAGTTCTTCACAGGAAAGAGACGGCCATGGAGAGCTTTTCTGTTGTATGGGCCTCCT 717
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 651 CCACAGTTCTTCACTGGAAAGAGACGGCCTTGGAGAGCTTTTCTGTTGTATGGGCCTCCT 710
Query 718 GGAACAGGAAAATCTTATTTGGCTAAGGCTGTTGCTACTGAAGCAGACTCTACCTTTTTC 777
|||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 711 GGAACAGGAAAATCGTATTTGGCTAAGGCTGTTGCCACTGAAGCTGACTCTACCTTTTTT 770
Query 778 AGCGTGTCTTCATCAGACCTTGTCTCGAAGTGGATGGGTGAAAGTGAGAAGCTAGTATCA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AGCGTGTCTTCATCAGACCTTGTCTCGAAGTGGATGGGTGAAAGTGAGAAGCTAGTATCA 830
Query 838 AACCTTTTCGAGATGGCCCGTGAAAGTGCTCCATCGATTATTTTTGTTGATGAGATAGAT 897
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 831 AACCTTTTCGAGATGGCCCGTGAAAGTGCTCCCTCGATTATTTTTGTTGATGAGATAGAT 890
Query 898 TCTTTGTGCGGTACACGTGGAGAAGGAAACGAGAGTGAAGCTTCAAGACGTATCAAAACA 957
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TCTTTGTGTGGTACACGTGGAGAAGGAAACGAGAGTGAAGCTTCAAGACGTATCAAAACA 950
Query 958 GAGCTTCTAGTGCAGATGCAGGGTGTTGGACACAATGATGAGAAAGTACTTGTACTTGCA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GAGCTTCTAGTGCAGATGCAGGGTGTTGGACACAATGATGAGAAAGTACTTGTACTTGCA 1010
Query 1018 GCAACCAATACACCCTATGCTCTTGATCAGGCTATCCGACGACGTTTTGACAAGCGTATC 1077
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1011 GCAACCAATACACCCTATGCTCTTGATCAGGCTATCCGGCGACGTTTTGACAAGCGTATC 1070
Query 1078 TATATTCCTCTCCCAGAGGCCAAGGCTCGTCAGCACATGTTCAAAGTCCATTTGGGAGAT 1137
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1071 TATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAAGTCCACTTGGGAGAT 1130
Query 1138 ACACCTCATAATTTAACTGAACCTGATTTTGAATATTTAGGCCAAAAGACAGAAGGGTTT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 ACACCTCATAATTTAACTGAACCTGATTTTGAATATTTAGGCCAAAAGACAGAAGGGTTT 1190
Query 1198 TCTGGTTCAGATGTGTCTGTTTGTGTAAAAGATGTTCTGTTTGAACCTGTTCGTAAAACA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TCTGGTTCAGATGTGTCTGTTTGTGTAAAAGATGTTCTGTTTGAACCTGTTCGTAAAACA 1250
Query 1258 CAAGATGCAATGTTCTTTTTCAAGTCTCCTGATGGTACATGGATGCCATGTGGGCCTAGG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CAAGATGCAATGTTCTTTTTCAAGTCTCCTGATGGTACATGGATGCCATGTGGGCCTAGG 1310
Query 1318 CACCCTGGTGCCATCCAGACTACAATGCAAGATCTAGCAGCAAAAGGGCTTGGCGAAAAG 1377
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1311 CACCCTGGTGCCATCCAGACTACAATGCAAGATCTAGCAACAAAAGGGCTTGCCGAAAAG 1370
Query 1378 ATTATTCCACCACCAATCACCAGAACCGATTTCGAAAAGGTACTTGCTAGACAAAGGCCA 1437
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1371 ATTATTCCACCACCAATCACCAGAACAGATTTCGAGAAGGTACTTGCAAGACAAAGGCCA 1430
Query 1438 ACAGTGAGCAAGTCTGACCTTGATGTCCACGAGAGATTCACACAGGAGTTTGGAGAAGAA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 ACAGTGAGCAAGTCTGACCTTGATGTCCACGAGAGATTCACACAGGAGTTTGGAGAAGAA 1490
Query 1498 GGTTGATAGATTTGACATTCC-ATCAAGCATCTTTCACAATCATATTATTATTAGTCTCT 1556
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1491 GGTTGATAGATTTGACATTCCCATCAAGCATCTTTCACAATCATATTATTATTAGTCTCT 1550
Query 1557 TCACTTTCTCCTTATGTATGTACTGAGAAGCAAAACAAAATCTCAAACCCATGTTTGATT 1616
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 TCACCATCTCCTTATGTATGTACTGAGAAGCAAAACAAAATCTCAAACCCATGTTTGATT 1610
Query 1617 CCATCCCAAAAACATTGAATTTGCTTTATTTCTCGAAATGTGTaaaaaaa---TGTTCTG 1673
| |||||||| ||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1611 TCTTCCCAAAA-CATTGAATTTGCTTTATTTCTCGAATTGTGTAAAAAAAAAATGTTCTG 1669
Query 1674 AACAATGTTTTCTA---AT-----CACCAAAAGTCTCCACATGAGCAAACTCCATCACTG 1725
|||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1670 AACAATGTTTTCTATTTATTATGTCACCAAAAGTCTCCACATGAGCAAACTCCATCACTG 1729
Query 1726 CTAAAGTGATGAAACCGATTTGAATCTCT 1754
|||||||||||||||||||||||||||||
Sbjct 1730 CTAAAGTGATGAAACCGATTTGAATCTCT 1758
> AT1G08270.2 | Symbols: | CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330);
BEST Arabidopsis thaliana protein match is:
AAA-type ATPase family protein (TAIR:AT2G27600.1); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr1:2606269-2607507 REVERSE LENGTH=1034
Length=1034
Score = 394 bits (213), Expect = 2e-108
Identities = 401/487 (82%), Gaps = 32/487 (7%)
Strand=Plus/Plus
Query 190 AAAATTATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAG-CAAGCGGTTCA 248
|||| ||||||||| |||||||| |||||||||||||||||||| || ||||||| | |
Sbjct 70 AAAAATATGTACAGTAATTTCAAAGAACAAGCGATCGAGTACGT-TAGACAAGCGG-TAA 127
Query 249 TGAAGACAATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACGCGCTTGAGTA 308
|| ||||||||||| || ||||| |||||||| ||| | ||||||||||||||||| ||
Sbjct 128 AGAGGACAATGCTGGTAACTACAACAAAGCTTTTCCTTTGTACATGAACGCGCTTGAATA 187
Query 309 CTTCAAAACTC-ATCTCAAGTATGAGAAGAACCCTAAGATCAGAGAAGCTATTACCCAGA 367
|||||||| || ||||||| |||||||||||||||| ||||||||| || || ||| | |
Sbjct 188 CTTCAAAA-TCTATCTCAAATATGAGAAGAACCCTAGGATCAGAGATGCCATCACCGACA 246
Query 368 AATTC-ACCGAGTATCTTCGTCGTGCTGAGGAGATCCGTGCTGT-TCTCGATGAAGGTGG 425
| ||| | ||||||||| |||||||||||||| || ||||| || | | | ||||| |||
Sbjct 247 AGTTCTA-CGAGTATCTCCGTCGTGCTGAGGAAATTCGTGCGGTAT-TAGTTGAAGTTGG 304
Query 426 ATCGGGTCCAGGATCTAACGGTGACGCTGCGGTTGCAACGAGGCCAAAGACTAAGCCCAA 485
|||||| |||||| || || ||||| |||||||| |||| ||| ||||||||||||||
Sbjct 305 ATCGGGGAAAGGATCGAATGGCGACGCAGCGGTTGCTACGAAGCCTAAGACTAAGCCCAA 364
Query 486 AGATGGAGAAGGTGGTGGTAAAGATGGAGAAGATCCTGAGCAATCGAAGCTTCGAGCTGG 545
||| | | | || |||| | | ||| || |||| ||||||||||||||
Sbjct 365 AGA-CG-G-A------GG---AGAT-G-G-AGA-----AG-AATCAAAGCTTCGAGCTGG 403
Query 546 GTTAAACTCTGCTATTGTTAGGGAGAAA-CCTAATATCAAGTGGTCTGATGTTGCTGGGC 604
|||||||||||||||| | ||||| ||| ||||| | |||||| | | |||||||||||
Sbjct 404 GTTAAACTCTGCTATTATAAGGGA-AAAGCCTAACGTTAAGTGGACAGTTGTTGCTGGGC 462
Query 605 TTGAAAGTGCTAAACAAGCTTTGCAGGAAGCTGTGATTTTGCCTGTTAAGTTTCCACAGT 664
|||||||||| ||||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 463 TTGAAAGTGCCAAACAAGCTTTAAAGGAAGCTGTGATTTTGCCTGTGAATTTTCCACAGT 522
Query 665 TCTTCAC 671
|||||||
Sbjct 523 TCTTCAC 529
> AT2G27610.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:11783927-11786533 REVERSE LENGTH=2607
Length=2607
Score = 122 bits (66), Expect = 8e-27
Identities = 66/66 (100%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 1689 TCACCAAAAGTCTCCACATGAGCAAACTCCATCACTGCTAAAGTGATGAAACCGATTTGA 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2607 TCACCAAAAGTCTCCACATGAGCAAACTCCATCACTGCTAAAGTGATGAAACCGATTTGA 2548
Query 1749 ATCTCT 1754
||||||
Sbjct 2547 ATCTCT 2542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86746541760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5