BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481754
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27590.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 2021 0.0
> AT2G27590.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr2:11777554-11779851
REVERSE LENGTH=1407
Length=1407
Score = 2021 bits (1094), Expect = 0.0
Identities = 1238/1306 (95%), Gaps = 15/1306 (1%)
Strand=Plus/Plus
Query 1 TTTTCTCTTCTTCCTCG-CT-CTGAGCCTCTGCTCTATTCTCTGG-TT-TGAA-TTCCAA 55
||||||||||||||||| || || | |||||||||||||||||| || ||| || |
Sbjct 1 TTTTCTCTTCTTCCTCGACTGCTCTG-CTCTGCTCTATTCTCTGGATTGAGAATTTGGAC 59
Query 56 TTTG---GACGACAAATGGGGAAACGAGAGAAAAAACCTAATCGACGTCGCCACAAAGGT 112
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGAGAACGACGACAAATGGGGAAACGAGAGAAAAAACCTAATCGACGTCGCCACAAAGGT 119
Query 113 GAATTTTCGAATGATACTGAAGATTTCTACGATCAACACCCGCCGGTTGTTGCCTCCGTC 172
|||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 GAATATTCGAATGATGCTGAAGATTTCTACGATCAACACCCGCCGGCTGTTGCCTCCGTC 179
Query 173 GACGACGAAGATGAAGAAAACTCTGAGGAAGAAGAAGACGAAAACTGTAATGAAGGAAAC 232
||||| |||||||||||||||||||| ||||||||||| ||||| || || ||||||
Sbjct 180 GACGAAGAAGATGAAGAAAACTCTGACGAAGAAGAAGAAGAAAA-TG--AT---GGAAAC 233
Query 233 GAATCATCGGATTTGCCGTCAAAGTTTCTTCTTTACCAACAATCTGTTCAGTCACCAAAA 292
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 234 GAATCATCGGATTTGCCTTCAAAGTTTCTCCTTTACCAACAATCCGTTCAGTCACCAAAA 293
Query 293 GGAGACATAAGTTACTTGCAGAAGTTCTTTTTAATGTATGTTGGTGGAAGACAACCTCTC 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 294 GGAGACATAAGTTACTTGCAGAAGTTCTTTTTAATGTATGTTGGTGGAAGACAACCTTTC 353
Query 353 CATTTTCAAGAAGATTTTTGTGGCACTGCTCTTTTAAGTGCGGAGTGGCTCAAGACTGAC 412
||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 354 CATTTCCAAGAAGATTTCTGCGGCACTGCTCTTTTAAGTGCGGAGTGGCTGAAGACTGAC 413
Query 413 ACAAGGCGGACTGCTATAGGGCTAGATTTTGACCTTGAGGCGTTAGAATGGTGCATGGAT 472
|| || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 414 ACTAGACGGACTGCTATAGGGCTTGATTTTGATCTTGAGGCGTTAGAATGGTGTATGGAT 473
Query 473 AACAACATTAGTAAACTTGGTTCTGACGTGTATTCAAGAATGTCGCTTTTTCATGGGAAT 532
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 474 AACAACATTAGTAAACTTGGTTCTGACGTGTATTCAAGAATGTCGCTTTTCCATGGGAAT 533
Query 533 GTTTTGAGTCCTCTTGAGGCTAAGCAAGTGAAATCTAAATCCCATGAGCTGATACAAAAT 592
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GTTTTAACTCCTCTTGAGGCTAAGCAAGTGAAATCTAAATCCCATGAGCTGATACAAAAT 593
Query 593 ATAAGCTTGGATGATGGTGATGATAATGAAGATTTGGTTGATCCTAGCGTTGTCGAATCT 652
|| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 594 ATCAGCTTGGATGATGGTGATGATAATGAAGATTTGGCTGATCCGAGTGTTGTCGAATCT 653
Query 653 TTAGAGAAAGATGGACCTGATTCGTTACCGAAGAGGGATATCGTGTGTGCTTTTAATTTT 712
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 654 TTAGAGAAAGATGGACCTGATTCGTTGCCAAAGAGGGATATTGTGTGTGCTTTTAATTTT 713
Query 713 AGTTGCTGTTGTCTCCACAAACGCTCAGAGTTGGTTTCTTACTTCAAGAATGCACGTGAT 772
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 714 AGTTGTTGTTGTCTCCACAAACGCTCGGAGTTGGTTTCTTACTTCAAGAATGCACGTGAC 773
Query 773 GCTTTGTCCAAGAAAGGTGGTATTTTCGTGATGGATTTATATGGAGGTGCTTCTGCTGAG 832
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 774 GCTTTGTCTAAGAAAGGTGGTATCTTCGTGATGGATTTATATGGAGGTGCTTCTGCTGAG 833
Query 833 GGACAGTTGAAGCTTCAACGGAAATTCCCAAATTTCACTTATACATGGGAGCAGGCTGAG 892
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 834 GGACAGTTGAAGCTTCAACGGAAATTCCCTAATTTCACGTATACATGGGAGCAGGCTGAG 893
Query 893 TTTGACATTTTAAGTCGCAAGACAAGGATCAGTCTGCACTATCACCTTCAGAAGCAGAAC 952
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TTTGATATTTTAAGCCGCAAGACAAGGATCAGTCTGCACTATCACCTTCAGAAGCAGAAC 953
Query 953 AGAAAGATTCGCCATGCTTTTTCATATAGCTGGAGACTGTGGTCATTACCGGAGATAAAG 1012
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 954 AGAAAGATTCGCCATGCTTTTTCATATAGCTGGAGACTGTGGTCATTGCCGGAGATAAAG 1013
Query 1013 GACTGTATGGAGGAAGCTGGGTTTAGCTCAGTCCATTTCTGGCTCAGAGAAATGCCGGAC 1072
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GATTGTATGGAGGAAGCTGGGTTTAGCTCAGTCCATTTCTGGCTCAGAGAAATGCCGGAC 1073
Query 1073 GCTTCTGAAATGCGTAGAACAGATGGGTTTGGTGCTGGACGTGATATCAAGTACGAACAA 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GCTTCTGAAATGCGTAGAACAGATGGGTTTGGTGCTGGACGTGATATCAAGTACGAACAA 1133
Query 1133 GTCAAGAGCTTTCAACAGTGTGATTCTTGGAATGCTTACATTGTTGCGGTCAGCCTTTAG 1192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1134 GTCAAGAGCTTTCAACAGTGTGATTCTTGGAATGCTTACATTGTTGCGGTCAGCCTCTAG 1193
Query 1193 TTATGCTTTCTATCTTTTGATCAAAAGACACTAGCCCTTTAAATCAGATCCTTTGTCGAT 1252
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1194 TTATGCTTTCTATCTTTTGATCAAAAGACACTAGCCCTTTAACTCAGATCCTTTGTCGAT 1253
Query 1253 TTTACATCTGGTATTTATTTCTGACATGCACTGGTTTAGTTTTATG 1298
||||||||| |||||||||||||||| ||||||||||||||| |||
Sbjct 1254 TTTACATCTAGTATTTATTTCTGACACGCACTGGTTTAGTTTCATG 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63855093240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5