BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481755
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27550.1 | Symbols: ATC | centroradialis | chr2:11773251-117... 904 0.0
> AT2G27550.1 | Symbols: ATC | centroradialis | chr2:11773251-11774681
FORWARD LENGTH=866
Length=866
Score = 904 bits (489), Expect = 0.0
Identities = 582/624 (93%), Gaps = 18/624 (3%)
Strand=Plus/Plus
Query 1 ATGACAGTGACCTATAACTCTGACAAGCAAGTCTACAATGGACATGAACTTTTTCCTTCT 60
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 248 ATGACGGTGACCTATAATTCTGACAAGCAAGTCTACAATGGCCATGAACTTTTCCCTTCT 307
Query 61 GCT-GTTACAAACAAACCTAAGGTTGAAGTTCATGGGGGTGACATGAGATCATTCTTCAC 119
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 G-TAGTTACATACAAACCTAAGGTTGAAGTTCATGGGGGTGACATGAGATCATTCTTCAC 366
Query 120 TTTGGTCATGACTGATCCTGATGTTCCTGGACCTAGTGATCCTTATCTGAGAGAGCACTT 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TTTGGTTATGACTGATCCTGATGTTCCTGGACCTAGTGATCCTTATCTGAGAGAGCACTT 426
Query 180 GCACTGGGTTGTTACCGATATCCCGGGGACGACCGATGTATCATTTGGAAAAGAGATAAT 239
||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 427 GCACTGGATTGTTACCGATATCCCGGGGACGACTGATGTATCATTTGGTAAAGAGATAAT 486
Query 240 CGGGTACGAGATGCCTCGGCCAAATATAGGGATCCACCGCTTTGTGTATTTGTTGTTCAA 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 487 CGGGTACGAGATGCCTCGGCCAAACATAGGGATCCACCGCTTTGTGTATTTGTTGTTCAA 546
Query 300 ACAGAACCGTAGAGGAAGTGTGGTGTCTGTGCCATCGTACAGGGACCAATTCAACACTCG 359
|||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 547 GCAGACCCGTAGAGGAAGTGTGGTGTCTGTGCCATCTTACAGAGACCAATTCAACACTCG 606
Query 360 AGAATTTGCGCATGAGAACGATCTCGGCCTTCCCGTCGCGGCGGTTTTCTTCAACTGCCA 419
||| ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 607 AGAGTTTGCTCATGAGAACGATCTTGGCCTCCCCGTCGCGGCTGTTTTCTTCAACTGCCA 666
Query 420 GCGTGAGACCGCCGCTAGACGTCGTTGATGAATGACTT-CCACCGCTGC------T-C-- 469
||||||||||||||||||||| |||||| | |||||| |||||||||| | |
Sbjct 667 GCGTGAGACCGCCGCTAGACGCCGTTGA--A-TGACTTTCCACCGCTGCCGCAGCTGCCC 723
Query 470 TAACTAATTCTGGCTGTGCCCGGACAATATGTGTTGTTCCATGCATTCTATAGTTTAGTT 529
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 724 TAACTAACTCTGGCTGTGCCCGGACAATATGTGTTGTTCCATGCATTCTATATTTTAGTT 783
Query 530 ACGAGGAG-CAGCTTTTCCTATCGTATTTATGTGTGTATTTGTATATGAACTGTTTGTGA 588
||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 784 ACG-GGAAACAGCTTTTCCTATCATATTTATGTGTGTATTTGT-TATGAACTGTTTGTGA 841
Query 589 TCTGAATAAACTTGGCTTATAATC 612
||||||||||||||||||||||||
Sbjct 842 TCTGAATAAACTTGGCTTATAATC 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5