BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481757
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27530.1 | Symbols: PGY1 | Ribosomal protein L1p/L10e family... 1459 0.0
AT1G08360.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 754 0.0
AT5G22440.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 564 6e-160
> AT2G27530.1 | Symbols: PGY1 | Ribosomal protein L1p/L10e family
| chr2:11763217-11764845 REVERSE LENGTH=989
Length=989
Score = 1459 bits (790), Expect = 0.0
Identities = 860/895 (96%), Gaps = 0/895 (0%)
Strand=Plus/Plus
Query 1 ATTTTTCCTCTTCCTTGATATAAAATCTTCAGCCGCCTCCGTAACACAATTAGGGCTTCC 60
||||||| ||||||||||||||||||||||||||||||| | |||| || ||||||||||
Sbjct 1 ATTTTTCTTCTTCCTTGATATAAAATCTTCAGCCGCCTCTGAAACATAACTAGGGCTTCC 60
Query 61 GCTTTCTTCACCATTTAGGATCAAAGATTCGTGACCTGAGAAGAAACTCAATATGAGTAA 120
||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 61 GCTTTCTTCACCATTCAGGATCAGAGATTCGTGACCTGAGAAGACACTCAATATGAGTAA 120
Query 121 GCTTCAGAGTGAGGCTCTTAGAGAAGCTATTACGACCATCAAGGGAAAATCTGAGGAGAA 180
|||||||||||||||| |||||||||| || ||||| |||||||||||||||||||||||
Sbjct 121 GCTTCAGAGTGAGGCTGTTAGAGAAGCCATAACGACTATCAAGGGAAAATCTGAGGAGAA 180
Query 181 AAAACGTAACTTTGTTGAGACAGTGGAACTTCAGATTGGTCTGAAGAACTATGACCCACA 240
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 GAAGCGTAACTTTGTTGAGACAGTGGAGCTTCAGATTGGTCTGAAGAACTATGACCCACA 240
Query 241 AAAGGATAAGCGTTTCAGTGGATCTGTGAAGCTACCGCATATTCCTCGCCCGAAAATGAA 300
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 241 AAAGGATAAGCGTTTCAGTGGATCTGTGAAGCTCCCACATATTCCTCGCCCAAAAATGAA 300
Query 301 GATCTGTATGCTTGGAGATGCTCAACATGTTGAGGAGGCGGAGAAAATGGGACTTAGCAA 360
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 301 GATCTGTATGCTTGGAGATGCTCAGCATGTTGAGGAGGCAGAGAAAATGGGACTTAGTAA 360
Query 361 CATGGATGTTGAGGCTTTGAAGAAGCTTAACAAGAACAAGAAGCTTGTTAAGAAGCTTGC 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 CATGGATGTTGAGGCTTTGAAAAAGCTTAACAAGAACAAGAAGCTTGTTAAGAAGCTTGC 420
Query 421 TAAGTCTTACCATGCTTTCTTGGCTTCTGAATCTGTCATTAAGCAGATTCCTCGTCTTCT 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 TAAGTCTTACCATGCTTTCTTGGCTTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCT 480
Query 481 TGGTCCTGGTCTTAACAAGGCAGGAAAGTTCCCAACTCTTGTGAGTCACCAAGAGTCATT 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 TGGTCCTGGTCTTAACAAGGCAGGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATT 540
Query 541 GGAAGCAAAGGTGAATGAGACCAAAGCAACAGTGAAGTTCCAGTTGAAGAAAGTTCTGTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGAAGCAAAGGTGAATGAGACCAAAGCAACAGTGAAGTTCCAGTTGAAGAAAGTTCTGTG 600
Query 601 TATGGGTGTTGCTGTTGGTAACCTTTCAATGGAAGAGAAGCAGCTTTTCCAGAATGTGCA 660
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 601 TATGGGTGTTGCTGTTGGTAACCTTTCCATGGAAGAGAAGCAGCTCTTCCAGAATGTGCA 660
Query 661 GATGAGCGTTAACTTCCTCGTCTCTCTCTTGAAGAAGAATTGGCAAAACGTAAGGTGTTT 720
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 GATGAGTGTTAACTTCCTCGTCTCGCTCTTGAAGAAGAATTGGCAAAACGTAAGGTGTTT 720
Query 721 GTACTTGAAGAGCACCATGGGACCACCACAAAGAATCTTTTGAGCtctctcttcttcttc 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 721 GTACTTGAAGAGCACCATGGGACCACCACAAAGAATCTTTTGAGCTCTCTCTTCTTATCC 780
Query 781 ttcttcCATCTCAGAATTTTGCATTGTGCTTTTGTTTCAGAGATCTGTGCTTGTTGGGAT 840
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 781 TTCTTCCATCTCAGAATTTTGCATTCTGTTTTTGTTTCAGAGATCTGTGCTTGTTGGGAT 840
Query 841 ATGGTTTGGATTTATATTAGCAGTTGTTTTTGGTTGACAATATATGATGCACTAT 895
||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 841 ATGGTTTGGATTTATATTAGCAGTTGTTTTTTGTTGACAATATATTATGCAATAT 895
> AT1G08360.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr1:2636011-2637915 FORWARD LENGTH=949
Length=949
Score = 754 bits (408), Expect = 0.0
Identities = 591/678 (87%), Gaps = 17/678 (3%)
Strand=Plus/Plus
Query 97 TGAGAAGAAACTCAATATGAGTAAGCTTCAGAGTGAGGCTC-TTAGAGAAGCTATTACGA 155
|||| | || ||||| ||||||||||||||||||||||| | || | ||||| || || |
Sbjct 63 TGAG-ACAAGCTCAAAATGAGTAAGCTTCAGAGTGAGGC-CGTTCGTGAAGCCATCACTA 120
Query 156 CCATCA-AGGGAAAATCTGAGGAGAAA-AAACGTAACTTTGTTGAGAC-AGTGGAACTTC 212
| |||| |||| ||||| |||| ||| |||||||||||||| ||||| | | || || |
Sbjct 121 CTATCACAGGG-AAATCCGAGG-CAAAGAAACGTAACTTTGTCGAGACTA-TTGAGCTCC 177
Query 213 AGATTGGTCTGAAGAACTATGACCCACAAAAGGATAAGCGTTTCAGTGGATCTGTGAAGC 272
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 178 AGATCGGTCTGAAGAACTATGACCCTCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGT 237
Query 273 TACCGCATATTCCTCGCCCGAAAATGAAGATCTGTATGCTTGGAGATGCTCAACATGTTG 332
|||| ||||| || || || |||||||||||||| ||||| |||||||| || |||||||
Sbjct 238 TACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTG 297
Query 333 AGGAGGCGGAGAAAATGGGACTTAG-CAACATGGATGTTGAGGCTTTGAAGAAGCTTAAC 391
| ||||| ||||| ||||| || | ||||||||||||||| || | || |||||||||
Sbjct 298 AAGAGGCTGAGAAGATGGG-GTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTTAAC 356
Query 392 AAGAACAAGAAGCTTGTTAAGAAGCTTGCTAAGTCTTACCATGCTTTCTTGGCTTCTGAA 451
||||||||||| || || ||||||||||| ||| ||||||||||||||||| |||||
Sbjct 357 AAGAACAAGAAACTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCCTCTGAG 416
Query 452 TCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGGAAAGTTC 511
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 417 TCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGGAAAATTC 476
Query 512 CCAACTCTTGTGAGTCACCAAGAGTCATTGGAAG-CAAAGGTGAATGAGACCAAAG-CAA 569
|||||||||||||| ||||| || || ||||| | ||||||||||||| || |||| |||
Sbjct 477 CCAACTCTTGTGAGCCACCAGGAATCCTTGGA-GTCAAAGGTGAATGAAAC-AAAGGCAA 534
Query 570 CAGTGAAGTTCCAGTTGAAGAAAGTTCTGTGTATGGGTGTTGCTGTTGGTAACCTTTCAA 629
|||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct 535 CAGTGAAGTTCCAGCTGAAGAAGGTTCTGTGCATGGGAGTTGCAGTTGGTAACCTTTCAA 594
Query 630 TGGAAGAGAAGCAGCT-TTTCCAGAATGTGCAGATGAGCGTTAACTTCCTCGTCTCTCTC 688
|||||||||||||| | |||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 595 TGGAAGAGAAGCAGATCTTTC-AGAATGTGCAGATGAGCGTCAACTTCCTCGTCTCGCTA 653
Query 689 TTGAAGAAGAATTGGCAAAACGTAAGGTGTTTGTACTTGAAGAGCACCATGGGACCACCA 748
||||||||||| |||||||| || |||||||||||| | |||||||| ||||||||||||
Sbjct 654 TTGAAGAAGAACTGGCAAAATGTCAGGTGTTTGTACCTCAAGAGCACAATGGGACCACCA 713
Query 749 CAAAGAATCTTTTGAGCt 766
||||||||||| ||||||
Sbjct 714 CAAAGAATCTTCTGAGCT 731
> AT5G22440.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr5:7435076-7436686 REVERSE LENGTH=996
Length=996
Score = 564 bits (305), Expect = 6e-160
Identities = 545/657 (83%), Gaps = 31/657 (5%)
Strand=Plus/Plus
Query 109 CAATATGAGTAAGCTTCAGAGTGAGGCTC-TTAGAGAAGCTATTACG-ACCATCAAGGGA 166
||| |||||||||||||||||||| || | | ||||| || | || | |||| |
Sbjct 87 CAAAATGAGTAAGCTTCAGAGTGAAGC-CGTGAGAGAGGC-AATAAGCTCCATTATCACT 144
Query 167 AAATCTGAGGAGA-AAA--AACGTAACTTTGTTGAGAC-AGTGGAACTTCAGATTGGTCT 222
| | | |||||| ||| ||| ||||| |||||| | | ||||| |||||||||||
Sbjct 145 CACTGTAAGGAGACAAAGCCACGCAACTTCACTGAGACTA-TTGAACTCCAGATTGGTCT 203
Query 223 GAAGAACTATGACCCACAAAAGGATAAGCG-TTTCAGTGGATCTGTGAAGCTACCGCATA 281
|||||||||||||| |||||||| ||| | ||| || || |||||||| | || ||
Sbjct 204 CAAGAACTATGACCCTCAAAAGGACAAGAGATTT-AGCGGTTCTGTGAAATTGCCTCACG 262
Query 282 TTCCTCGCCCGAAA-ATGAAGATCTGTATGCTTGGAGATGCTCAACATGTTGAGGAGGCG 340
||||| | || ||| |||||||| || |||||||| ||||| || || || || |||||
Sbjct 263 TTCCTAGGCC-AAAGATGAAGATTTGCATGCTTGGTGATGCCCAGCACGTCGAAGAGGCT 321
Query 341 GAGAAAATGGGACTTAGCAA-C-ATGGATGTTGAGGCT-TTGAAGAAGCTT-AACAAGAA 396
||||| || ||| || | || | ||||||||||| ||| || |||||| || ||||||||
Sbjct 322 GAGAAGATTGGA-TT-GGAATCTATGGATGTTGAAGCTCTT-AAGAAG-TTGAACAAGAA 377
Query 397 CAAGAAGCTTGTTAAGAAGCTTGCTAAG-TCTTACCATGCTTT-CTTGGCTTCTGAATCT 454
|||||| ||||||||||||||||||||| || ||||||||| ||| ||||||||||||
Sbjct 378 CAAGAAACTTGTTAAGAAGCTTGCTAAGAAATT-CCATGCTTTCCTT-GCTTCTGAATCT 435
Query 455 GTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGGAAAGTTCCCA 514
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 436 GTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTCAACAAGGCAGGAAAATTCCCA 495
Query 515 ACTCTTGTGAGTCACCAAGAGTCATTGGAAGC-AAAGGTGAATGAGACCAAAG-CAACAG 572
|||||||| || ||||||||||| |||||| | |||| |||||||||| |||| ||||||
Sbjct 496 ACTCTTGTTAGCCACCAAGAGTCTTTGGAATCCAAAG-TGAATGAGAC-AAAGGCAACAG 553
Query 573 TGAAGTTCCAGTTGAAGAAAGTTCTGTGTATGGGTGTTGCTGTTGGTAACCTTTCAATGG 632
||||||||||| | ||||| ||||| |||||||| |||||||| ||||| ||||| ||||
Sbjct 554 TGAAGTTCCAGCTCAAGAAGGTTCTATGTATGGGAGTTGCTGTCGGTAATCTTTCCATGG 613
Query 633 AAGAGAAGCAGCT-TTTCCAGAATGTGCAGATGAGCGTTAACTTCCTCGTCTCTCTCTTG 691
| ||||||||| | |||| | ||||| |||||||| |||||||||||||| |||||||||
Sbjct 614 AGGAGAAGCAGATCTTTCAA-AATGTTCAGATGAGTGTTAACTTCCTCGTTTCTCTCTTG 672
Query 692 AAGAAGAATTGGCAAAACGTAAGGTGTTTGTACTTGAAGAGCACCATGGGACCACCA 748
||||| || |||||||| || ||||| ||||||||||||||||| ||||| ||||||
Sbjct 673 AAGAAAAACTGGCAAAATGTGAGGTGCTTGTACTTGAAGAGCACAATGGGTCCACCA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43703707890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5