BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481759
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28490.1 | Symbols: | RmlC-like cupins superfamily protein ... 2134 0.0
> AT2G28490.1 | Symbols: | RmlC-like cupins superfamily protein
| chr2:12178597-12181012 REVERSE LENGTH=1780
Length=1780
Score = 2134 bits (1155), Expect = 0.0
Identities = 1517/1679 (90%), Gaps = 75/1679 (4%)
Strand=Plus/Plus
Query 1 ATTGTGAATCATCAGAGAGAGTGGGGAAAAATGGAGAAAAACAAGAGAGCTTTCGGGTTT 60
||||||||||||| |||||||| |||||| ||||||||||||||||||||| |||| |||
Sbjct 1 ATTGTGAATCATCGGAGAGAGT-GGGAAACATGGAGAAAAACAAGAGAGCTATCGGATTT 59
Query 61 TTGCTTCTGGTGGTGCTTATCAATGGAGTTATGATGACGAGATCAAATGGGTATGAagga 120
|| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTACTTCTGGTCGTACTTATCAATGGAGTTATGATGACGAGATCAAATGGGTATGAAGGA 119
Query 121 gaagaagagt-----------gg-ggaggag-gt-----ggag--g-aggagg-ggag-- 156
|||||||||| || ||||||| || |||| | |||||| ||||
Sbjct 120 GAAGAAGAGTGGGGAGGAGCAGGAGGAGGAGAGTGGGGAGGAGCAGAAGGAGGAGGAGCA 179
Query 157 tggggaggaggta-ctggaggaggaggag-agtgggga-g-g-a-gag--ggaggaggag 208
||||||||||| | |||||||||||||| | |||||| | | | ||| ||||||||||
Sbjct 180 TGGGGAGGAGG-AGGTGGAGGAGGAGGAGCA-TGGGGAGGAGAAGGAGAAGGAGGAGGAG 237
Query 209 agtggggaggaggaggagaaggaggaggtggaggaagaagaggaTGGTTCATGATGAGAG 268
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 AGTGGGGAGGAGGAGGAGAAGGAGGTGGTGGAGGAAGAAGAGGATGGTTCATGATGAGAG 297
Query 269 AGTCGAAGCAAGTGATCAAATCAGAAGGTGGAGAGATGAGAGTTGTGATATCACCAAGAG 328
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 AGTCGAGGCAAGTGATCAAATCAGAAGGTGGAGAGATGAGAGTTGTGTTATCACCAAGAG 357
Query 329 GAAGGATCATTGAGAAGCCAATGCACATTGGGTTTCTAACAATGGAACCTAAGACCCTCT 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAAGGATCATTGAGAAGCCAATGCACATTGGGTTTCTAACAATGGAACCTAAGACCCTCT 417
Query 389 TTGTCCCTCAGTATCTTGACTCAAGCCTTCTCATCTTTATTCGTCAAGGTGAAGCAACGC 448
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 TTGTCCCTCAGTATCTTGACTCAAGCCTTCTCATCTTTATTCGTCAAGGTGAAGCAACCC 477
Query 449 TTGGAGTGATATGCAAAGACGAATTCGGAGAGAGGAAATTGAAAGCAGGAGACATCTACT 508
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 TTGGAGTGATATGCAAAGACGAATTCGGAGAGAGGAAACTGAAAGCAGGAGACATCTACT 537
Query 509 GGATTCCGGCTGGTTCTGTCTTTTATTTGT-TAAACACAGGCCGAGGTCAACGCCTTCAC 567
|||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 538 GGATTCCGGCTGGTTCTGTCTTTTATTTACATAA-CACAGGCCTAGGTCAACGCCTTCAT 596
Query 568 GTCATTTGCAGCATTGATCCAACTCAGAGCCTCGGTTTCGAAACCTTCCAACCTTTCTAT 627
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 597 GTCATTTGCAGCATTGATCCAACGCAGAGTCTCGGCTTCGAAACCTTCCAACCTTTCTAT 656
Query 628 ATAGGTGGAGGACCATCGTCTGTTCTCGCTGGCTTTGAACC-CGACACTTTAACTTCAGC 686
||||||||||| || ||||||||||| ||||| ||||| || | ||||||||||||||||
Sbjct 657 ATAGGTGGAGGGCCTTCGTCTGTTCTAGCTGGATTTGATCCTC-ACACTTTAACTTCAGC 715
Query 687 ATTCAACGTATCCCGACCAGAGCTTCAACAAATGATGATGAGTCAATTCCGTGGCCCGAT 746
||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 716 ATTCAACGTTTCCCTACCTGAGCTGCAACAAATGATGATGAGTCAATTCCGTGGCCCGAT 775
Query 747 TGTACACGTCATGGAAGGGCCACAACCACAACCG-A--CGA---TATGGACCCAATTCTT 800
|||| |||||| |||||||||||||||||||| | ||| ||||||||||||| ||
Sbjct 776 TGTATACGTCACCGAAGGGCCACAACCACAACCACAATCGACGGTATGGACCCAATTTTT 835
Query 801 GGGGTTGAGAGGGGAAGAGAAACATAAGCAACTCAAGAAACTCTTGGAGA-TGAAACAAG 859
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 836 GGGGTTGAGAGGGGAAGAGAAACATAAGCAACTCAAGAAACTCTTGGAGACT-AAACAAG 894
Query 860 GATCCCCTCAAGATCAACAATCCACTTCAGGGTGGTCTTGGAGGAATATTGTAAGATCGA 919
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 895 GATCCCCTCAAGATCAACAATACAGTTCAGGGTGGTCTTGGAGGAATATTGTAAGATCGA 954
Query 920 TTTTGGATCTAACAGAAGAAAAGAATAAAGGGTCAGGATCTTCCGAGTGCGAGGACTCAT 979
||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct 955 TTTTGGATCTAACAGAAGAAAAGAATAAAGGGTCAGGATCTTCTGAATGTGAGGACTCGT 1014
Query 980 ACAACATCTATGATCAGAAATAT-------G----GAT---------GGA-G---TATAG 1015
||||||| |||||| ||||| || | ||| ||| | |||||
Sbjct 1015 ACAACATTTATGATAAGAAAGATAAACCAAGTTTTGATAACAAATATGGATGGAGTATAG 1074
Query 1016 CTCTTGACTATGACGATTACGAGCCTCTCAAACACTCGGGGATCGGAGTTTATCTCGTAA 1075
||||||| |||||||||||| ||||||| |||||||||||||||||||| || |||||||
Sbjct 1075 CTCTTGATTATGACGATTACAAGCCTCTTAAACACTCGGGGATCGGAGTATACCTCGTAA 1134
Query 1076 ATCTCACCGCGGGATCAATGATGGCTCCACACATGAACCCAACAGCCACAGAATATGGCA 1135
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1135 ATCTCACCGCGGGAGCAATGATGGCTCCACACATGAACCCAACAGCAACAGAATATGGTA 1194
Query 1136 TCGTTTTAGCTGGCTCTGGAGACATTCAAGTTGTATTTCCTAATGGAACTTCTGCTATGA 1195
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1195 TAGTTTTAGCTGGCTCTGGAGAGATCCAAGTTGTATTTCCTAATGGAACTTCTGCTATGA 1254
Query 1196 ACACGAGAGTCTCCGTAGGAGATGTCTTCTGGATCCCTCGATACTTCGCTTTTTGCCAGA 1255
|||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1255 ACACAAGAGTCTCCGTAGGAGATGTCTTCTGGATCCCTAGATACTTCGCGTTTTGCCAGA 1314
Query 1256 TCGCATCTCGGACCGGACCATTCGAGTTTGTAGGATTTACCACGTCGGCTCACAAGAATC 1315
||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1315 TCGCATCTCGGACCGGACCATTCGAGTTTGTAGGATTCACCACATCAGCTCACAAGAATA 1374
Query 1316 GGCCTCAGTTCCTGGTCGGATCAAACTCACTACTCAAGACTCTGAATCTGACGTCATTGT 1375
| ||||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1375 GACCTCAGTTCCTAGTTGGATCAAACTCACTACTCAGGACTTTGAATCTGACGTCATTGT 1434
Query 1376 CCATGGCATTCGGAGTCGATGAAGAGACAATGAGGCGGTTCATTGATGCCCAGAGAGAGG 1435
|||| || || ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1435 CCATAGCGTTTGGAGTCGATGAAGAGACAATGAGGCGGTTCATTGAGGCGCAGAGAGAGG 1494
Query 1436 CTGTTATTCTCCCTACCGC-ATCGGCAGCTCCTCCGCATGTCGGCGAAACGGTGCGCGAT 1494
|||||||||||||||| || | |||||||||| |||||||| || |||| ||| ||||
Sbjct 1495 CTGTTATTCTCCCTAC-GCCAGCGGCAGCTCCCCCGCATGTTGGTGAAATGGTTAGCGAC 1553
Query 1495 CGCCTTGTTTGAGGAATGTGCAAAAGGTTTTCTTTTTGAATGCTATGTATGTAGTTAA-C 1553
||| |||||||||||||||| ||||| |||||||||| ||| ||||||||||||||| |
Sbjct 1554 CGCTTTGTTTGAGGAATGTGTGAAAGGGTTTCTTTTTGTATGTTATGTATGTAGTTAAAC 1613
Query 1554 TATGAGTATGTATGGATGTATGTTTTTGTTTCTTTGAAACAATATTAATAAAGGTGATC 1612
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1614 -ATGAGTATGTATGGATGTATGTTTTTGTTTCTTTGAAATAACATTAATAAAGGTGATC 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5