BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481760
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28500.1 | Symbols: LBD11 | LOB domain-containing protein 11... 1131 0.0
> AT2G28500.1 | Symbols: LBD11 | LOB domain-containing protein
11 | chr2:12186569-12188142 REVERSE LENGTH=765
Length=765
Score = 1131 bits (612), Expect = 0.0
Identities = 717/767 (93%), Gaps = 9/767 (1%)
Strand=Plus/Plus
Query 1 ATCAGATAAGTCCCCAAAATATTTTGAGAATCATGCTAAAGATGGAGATTACCGGTGGGG 60
|||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATCAAATAAGCCCCCAAAATATTTTGAGAATCATGCTAAAGATGGAGATTAACGGTGGGG 60
Query 61 TTGCTACACCTACTGCTTCCGTCGTCGCCGTCGCCACCGTGGCAGAAACCAAAACTCCTG 120
| |||||||||||||| | || ||||||||||| ||| ||||||||| ||||| |
Sbjct 61 TCGCTACACCTACTGC-T---TC--CGCCGTCGCCAAGGTGACAGAAACCACCACTCCCG 114
Query 121 TTACCTCTCCTTCTCCTACCTCTTCACCTCCACCGCCACCTTCCCCGCAGCAGCCAACAC 180
||| |||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| |||
Sbjct 115 TTAACTCTCCTTCTCCCACTTCTTCACCTCCGCCGCCTCCTTCGCCGCAACAGCCGCCAC 174
Query 181 CACCGCCGGTGGTACTAAGCCCTTGTGCGGCTTGCAAGATTTTGAGGCGCCGGTGCGCCG 240
||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 175 AACCACCGGTTGTACTAAGCCCTTGTGCGGCTTGCAAGATTTTGCGGCGGCGGTGCGCCG 234
Query 241 AGAAATGTGTTTTGGCACCGTACTTTCCTCCGACGGATCCGGCGAAGTTCACTATCGCTC 300
| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 235 ATAAATGTGTTTTGGCACCGTACTTTCCTCCTACGGACCCGGCGAAGTTCACAATCGCTC 294
Query 301 ACCGTGTCTTCGGAGCTAGCAACATTATTAAGTTCTTGCAGGAACTCCCGGAATCGCAAA 360
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 295 ACCGTGTCTTTGGAGCTAGCAACATTATTAAGTTCTTGCAGGAACTTCCAGAATCGCAAA 354
Query 361 GAACTGATGCTGTTAATAGCATGGTCTATGAAGCCGGAGCTAGGATGAGAGATCCGGTTT 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GAACAGATGCTGTTAATAGCATGGTCTATGAAGCCGGAGCTAGGATGAGAGATCCGGTTT 414
Query 421 ACGGATGTGCGGGTGCAATTTACCATTTGCAGAGACAAGTGAGCGAGCTTCAAGCACAAC 480
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 415 ACGGATGTGCGGGTGCAATTTATCATTTGCAGAGACAAGTGAGTGAGCTTCAAGCACAAC 474
Query 481 TTGCGAAAACTCAAGTAGAGTTAGTAGGCATGCAACTCCAAAGATCAAGTCTACTAGAAT 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTGCAAAAACTCAAGTAGAGTTAGTAGGCATGCAACTCCAAAGATCAAGTCTACTAGAAT 534
Query 541 TGATATATAATATGGAGCAAACAAAGTTGTCAGCACAAGAGCAAGGACAACAGAAGATGT 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 535 TGATATATAATATGGAGCAAACAAAGTTGTCAGTACAAGAGCAAGGACAACAGAAGATGT 594
Query 601 CCTTCGAGAGTTCGTTTGAAAGCGGCGATGAGTTCATTAGTAGCCCCGACGAAGAGAGCA 660
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 595 CCTTTGAGAGTTCATTTGAAAGCGGCGATGAGTTCATTAGTAGCCCGGACGAAGAGAGCA 654
Query 661 ATGATTTGGGATTCCTTGAGGACAACAACAACAA---TAATTCATCAATGTCGTGGTGGG 717
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 655 ATGATTTGGGGTTCCTTGAGGACAACAACAACAACAATAATTCATCAATGTCGTGGTGGG 714
Query 718 ATCCTCTTTGGACATGATCATAACTTATGGTATTATTAGCTCGCTTT 764
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 715 ATCCTCTTTGGACATGATCATAACTTATGGTATTATTAGCTCACTTT 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37123034633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5