BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481761
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28510.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 1676 0.0
AT5G60200.1 | Symbols: TMO6 | TARGET OF MONOPTEROS 6 | chr5:242... 172 5e-42
AT2G46590.2 | Symbols: DAG2 | Dof-type zinc finger DNA-binding ... 117 2e-25
> AT2G28510.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr2:12199098-12200765 REVERSE LENGTH=1290
Length=1290
Score = 1676 bits (907), Expect = 0.0
Identities = 1049/1115 (94%), Gaps = 20/1115 (2%)
Strand=Plus/Plus
Query 1 tctctctttctctctctctGGTTCCCTAGAGTTTGAGCAAAATATC-A-C--AA---C-C 52
||| ||| |||||||||||||||||||||| |||||||||||| || | | || |
Sbjct 28 TCTTTCTCTCTCTCTCTCTGGTTCCCTAGAATTTGAGCAAAATTTCTACCATAATTGCTA 87
Query 53 ATAATT----GCTAACACAAGTAATCGTTGCTTCGATCCTTTGTTGCATGGATGGATCCT 108
|| ||| | |||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 88 ATTATTAAAAGGAAACATAAGTAATCGTTGCTTCGATCCTTTGTTACATGGATGGATCCT 147
Query 109 CCACAGGAAATCTCAAACGAGACTTTGGAAACTATATTGGTAAGCTCAACAAAAGGAAGC 168
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 148 GAACAGGAAATCTCAAACGAGACTTTGGAAACTATATTGGTAAGTTCAACAAAAGGAAGC 207
Query 169 AATAATAACAATAAGAAAATGGAAGAAGAAATGAAGAAGAAAGTATCAAGAGGAGAATTA 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 AATAATAACAATAAGAAAATGGAAGAAGAAATGAAGAAGAAAGTATCAAGAGGAGAATTA 267
Query 229 GGAGGTGAAGCTCAAAATTGTCCAAGATGTGAATCTCCAAACACAAAGTTTTGTTACTAC 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GGAGGTGAAGCTCAAAATTGTCCAAGATGTGAATCTCCAAACACAAAGTTTTGTTACTAC 327
Query 289 AACAACTATAGTCTCTCTCAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACT 348
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 AACAACTATAGTCTCTCACAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACT 387
Query 349 AAAGGTGGTACTCTCCGTAACGTCCCCGTCGGTGGTGGTTGCCGTCGAAACAAACGATCC 408
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 388 AAAGGCGGTACTCTTCGTAACGTTCCCGTCGGTGGTGGTTGCCGTCGAAACAAACGATCC 447
Query 409 TCTTCCTCAGCTTTCTCCAAGAACAACAA---TAAGTCTATTAGTTTCCATAATGATCCA 465
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 448 TCTTCCTCAGCTTTCTCCAAGAACAACAACAATAAGTCTATTAATTTCCATACTGATCCA 507
Query 466 CTTCAGAACTCTTTAATTACGGGAATGCCACCATCATCTTATGGATATGA-C--TCCATT 522
||||||||| |||||||||||||||||||||||||||||| ||| ||||| | ||||||
Sbjct 508 CTTCAGAACCCTTTAATTACGGGAATGCCACCATCATCTTTTGGTTATGATCACTCCATT 567
Query 523 GATCTCAACCTCGCTTTTGCTACTCTTCAAAAGCATCATTCATCCTCTCAGGCTACTACG 582
||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||
Sbjct 568 GATCTCAACCTCGCTTTCGCTACTCTCCAAAAGCATCATTTATCCTCTCAAGCTACTACG 627
Query 583 CCTTCTTTTGGGTTTGGAGGTGATCTTTCTATTTATGGAAACTCAGCCAATGATGTAGGG 642
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 628 CCTTCTTTTGGGTTTGGAGGTGATCTTTCTATTTATGGAAACTCAACGAATGATGTAGGG 687
Query 643 ATCTTTGGAGGACAAAACGGTAATT-TCAACAATAGCTTGTGTTATGGGTTTATGTCCGG 701
||||| ||||| |||||||||| || | |||||||| |||||||||||||||||||||||
Sbjct 688 ATCTTCGGAGGGCAAAACGGTACTTAT-AACAATAGTTTGTGTTATGGGTTTATGTCCGG 746
Query 702 AAATGGTAACAATCATCAAAATGAAATCAAGATGGCTTCTACATTGGGGATGTCTTTGGA 761
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 AAATGGTAATAATAATCAAAATGAAATCAAGATGGCTTCTACATTGGGGATGTCTTTGGA 806
Query 762 AGGAAACGAGAGAAAGCAAGAGAATGTGAACAATAACAACAATAGCTCAGAGAATCCTAG 821
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 807 AGGAAACGAGAGAAAGCAAGAGAATGTGAACAATAACAATAATAACTCAGAGAATCCTAG 866
Query 822 CAAGGTCTTATGGGGATTTCCGTGGCAGATGAACGGAGATTCTGCCGGAGTTGTACCGGA 881
|||||| || ||||| ||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 867 CAAGGTGTTCTGGGGGTTTCCATGGCAGATGACCGGAGATTCCGCCGGAGTTGTACCGGA 926
Query 882 GATTGATCCCGGAAGGGAAAGCTGGAATGGGATGGCTTCATCTTGGAATAATGGTTTACT 941
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 927 GATTGATCCCGGAAGGGAAAGCTGGAATGGGATGGTTTCATCTTGGAATAATGGTTTACT 986
Query 942 CAACACTCCTTTGGTCTAGAAGATCATtaataaataaatatataatatattactatatat 1001
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 987 CAACACTCCTTTGGTCTAGCAGATCATTAATAAATAAATATATAATATATTACTATATAT 1046
Query 1002 TAAAGTTTATGTCATCACATGTTTGTATACCACTTTCACTAATATGGGGGATGTTTGGTT 1061
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1047 TAAAGTTTATGTCATCACATGTTTGTACACCACTTTCACTAATATGGGGGATGTTTGGTT 1106
Query 1062 TTTATAATTTCTAGGGTTTCTATCCTTTTTTAGTT 1096
|||||||||||||||||||||||| ||||||||||
Sbjct 1107 TTTATAATTTCTAGGGTTTCTATCTTTTTTTAGTT 1141
> AT5G60200.1 | Symbols: TMO6 | TARGET OF MONOPTEROS 6 | chr5:24240975-24242523
FORWARD LENGTH=1449
Length=1449
Score = 172 bits (93), Expect = 5e-42
Identities = 139/162 (86%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 247 TGTCCAAGATGTGAATCTCCAAACACAAAGTTTTGTTACTACAACAACTATAGTCTCTCT 306
|||||| | || || || ||||||||||||||||||||||||||||||| |||||| ||
Sbjct 272 TGTCCACGTTGCGACTCAACAAACACAAAGTTTTGTTACTACAACAACTACAGTCTCACT 331
Query 307 CAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACTAAAGGTGGTACTCTCCGT 366
|| ||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |
Sbjct 332 CAGCCTCGCTACTTCTGCAAATCATGCCGGAGATATTGGACTAAAGGTGGAACTCTAAGG 391
Query 367 AACGTCCCCGTCGGTGGTGGTTGCCGTCGAAACAAACGATCC 408
||| ||||||| ||||| || ||||| |||||||||||||
Sbjct 392 AACATCCCCGTGGGTGGAGGCTGCCGGAAAAACAAACGATCC 433
> AT2G46590.2 | Symbols: DAG2 | Dof-type zinc finger DNA-binding
family protein | chr2:19133040-19134905 FORWARD LENGTH=1236
Length=1236
Score = 117 bits (63), Expect = 2e-25
Identities = 99/116 (85%), Gaps = 4/116 (3%)
Strand=Plus/Plus
Query 243 AAATTGTCCAAGATGTGAATCTC--CAAACACAAAGTTTTGTTACTACAACAACTATAGT 300
||||||||||||||| || ||| | |||||||||||||||||||||||||||||||||
Sbjct 366 AAATTGTCCAAGATG-CAA-CTCAACCAACACAAAGTTTTGTTACTACAACAACTATAGT 423
Query 301 CTCTCTCAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACTAAAGGTGG 356
||| | ||||| | |||||||||||| |||||| || |||||||| |||||||
Sbjct 424 CTCACACAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGG 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5