BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481772
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like super... 1395 0.0
> AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superfamily
protein | chr2:12262013-12263415 FORWARD LENGTH=966
Length=966
Score = 1395 bits (755), Expect = 0.0
Identities = 854/902 (95%), Gaps = 6/902 (1%)
Strand=Plus/Plus
Query 1 ACATACACACAAAGCATCAATATTTGTCTGAGCGGAGAATGAGTCCTGTGGCTTCAACGA 60
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 65 ACACACACACAAAGCATCAATATTTGTCTGAACGGAGAATGAGTCCTGTGGCTTCAACGA 124
Query 61 GGTGGTGTCCGACGCCGGAGCAATTGATGATCTTGGAAGAGATGTACCGGAGTGGTATAC 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 125 GGTGGTGTCCGACGCCGGAGCAACTGATGATCTTGGAAGAGATGTACCGGAGTGGTATAC 184
Query 121 GGACTCCGAATGCGGTGCAGATACAACAGATCACAGCTCACTTGGCGTTCTATGGTCGCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 185 GGACTCCGAATGCGGTGCAGATACAACAGATCACAGCTCACTTGGCGTTCTATGGAAGAA 244
Query 181 TCGAGGGCAAAAACGTCTTTTATTGGTTCCAGAACCATAAGGCCAGAGATAGACAGAAGC 240
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 245 TCGAGGGCAAAAACGTCTTTTACTGGTTCCAGAACCATAAGGCTAGAGATAGACAGAAGC 304
Query 241 TGAGGAAAAAATTAGccaagcaacttcaccaacagcaacatcaacttcaactccaactac 300
||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 305 TGAGGAAGAAACTAGCCAAGCAACTTCACCAGCAACAACATCAACTTCAACTCCAACTTC 364
Query 301 aacaaatcaaaccaaaaccaaTGTCATCGATGATGTCTCAACCAGTTAATAATACTatca 360
| || ||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||
Sbjct 365 AGCAGATCAAACCAAAACCAATATCATCGATGATTTCTCAACCAGTTAATAAGAATATCA 424
Query 361 ttgatcatcataatccttaccatcatcaccatcataatcttcatcataatcatcatcGTC 420
| |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 425 TCGATCATCACAATCCTTATCATCATCACCATCATAATCATCATCATAATCATCATCGTC 484
Query 421 CTTATGATCATATGTCCTTCGCTTGCTGCTCTCACCCTTCTTCCATGTGTCTTCCTCATC 480
| ||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||||
Sbjct 485 CATATGATCATATGTCCTTTGATTGCTGCTCTCATCCTTCTCCCATGTGTCTTCCTCATC 544
Query 481 AGGGAATTGGCGGAG-A-AA-CTCAAAGCAAAGTGATGAATGAATATTATTGCACCAATA 537
|||||| ||| | || | || ||| |||||||||||||||||||||||| |||||||| |
Sbjct 545 AGGGAACTGGAGTAGGAGAAGCTCCAAGCAAAGTGATGAATGAATATTACTGCACCAAAA 604
Query 538 GTGGGGCTGAAGAGATATTGATGCAAAAATCAATCACGGGTCCAAACTCAACGTACGGTC 597
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 605 GTGGAGCTGAAGAGATATTGATGCAAAAATCAATCACGGGTCCAAACTCATCGTACGGTC 664
Query 598 GAGATTGGATGATGATGATGGATATGGGCCCACGACCATCATATCCCTCATCATCATCA- 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GAGATTGGATGATGATGATGGATATGGGCCCACGACCATCATATCCCTCATCATCATCAT 724
Query 657 C-CC-ATTCCATGTTGTAACATGATGATGAGCAGTCCAAAGATACCATTGAAAACCCTTG 714
| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 725 CACCCATTTCATGTTGTAACATGATGATGAGCAGTCCAAAGATACCATTGAAAACCCTGG 784
Query 715 AACTTTTCCCAATCTCATCCATCAACTCCAAACAAGACAGTACTAAACTTTAAAGAAAAG 774
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 785 AACTTTTCCCAATCTCATCTATCAACTCCAAACAAGACAGTACCAAACTTTAAAGAAAAG 844
Query 775 ACAACAAATACAAAAGAGATTCTGCAGGTGTTTCATTCATGTATCACTGTATGATGTGTC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 ACAACAAATACAAAAGAGATTCTGCAGGTGTTTCATTCATGTATCACTGTATGATGTGTC 904
Query 835 AAAGGCTAAGACGAAAACACGTGTACTTGAGGGTAAAGTAACAGCCGTTGGATATAATTC 894
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 905 AAAGGCTAAGAAGAAAACACGTGTACTTGAGGGTAAAGTAATAGCCGTTGGATATAATTC 964
Query 895 GT 896
||
Sbjct 965 GT 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43753942037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5