BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481775
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06550.1 | Symbols: | transposable element gene | chr2:2602... 1110 0.0
AT4G01975.1 | Symbols: | transposable element gene | chr4:8586... 385 4e-106
AT5G28888.1 | Symbols: | transposable element gene | chr5:1090... 294 7e-79
> AT2G06550.1 | Symbols: | transposable element gene | chr2:2602742-2603484
REVERSE LENGTH=743
Length=743
Score = 1110 bits (601), Expect = 0.0
Identities = 696/743 (94%), Gaps = 1/743 (0%)
Strand=Plus/Plus
Query 1 ACAGAAATGTACTACTGCAATTAGGCGTTTGACATATGGTCTTGCAAACGATGCGATGGA 60
||||||||||||||| |||||||||||| || ||||||||||||||||| ||| |||| |
Sbjct 1 ACAGAAATGTACTACCGCAATTAGGCGTCTGGCATATGGTCTTGCAAACAATGTGATGAA 60
Query 61 CGAATACCTCCGCATGGGCGCAACCACTGTGAGCCAAGCACTAGAGAATTTTGTAGATGG 120
|| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 61 CGCATACCTCCGCATGGGCGCAACCACTATGAGTCAAGCACTAGAGAATTTTGTAGATGG 120
Query 121 CATAATAAATTTATTCCAAGACGAATATTTGAGGCGGCCTACACGTGAGGATCTAGAACG 180
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 121 CATAATAAATTTATTCCAAGATGAATATTTGAGGCGACCTACACGTGAGGATCTAGAACG 180
Query 181 GTTACTTCATTCTAGAAAGGAACGCGGATTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240
||||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 GTTACTTCATTTTGGAAAAGAACGCGGTTTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240
Query 241 GCATTGGGAGTGGAAGAATTGTCCTACGGCTTGGAAAGGACAGTATTCACGCGGACATGG 300
||||| ||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 241 GCATTAGGAGTGGAATAATTGTACTACAGCTTGGAAAGGGCAGTATTCACGCGGACATGG 300
Query 301 AAAACCCACTATTGTTTTAGAGGCCGTGGCATCACAAGATTTATGGATTTGGCATGCttt 360
|||| |||||||| |||||||||||||| ||| |||||| |||||||||| ||||||||
Sbjct 301 AAAATCCACTATTATTTTAGAGGCCGTGACATTTCAAGATCTATGGATTTGACATGCTTT 360
Query 361 ttttGGGGCTCCAGGTACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGTTTGA 420
|||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TTTTGGGG-TTCAAGTACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGGTTGA 419
Query 421 TGATATATTAGAAGGTCGAGCTCCACGACTCACGTACGAAGTCAATGGACATCAATACAA 480
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 420 TGATATATTAGAAGGTCGAGCTCCACGACTCAAGTACGAAATCAATGGACATCAAAACAA 479
Query 481 AATGGGTTATTACCTCACAGATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAAT 540
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 480 AATGGGTTATTACCTCACATATGATATATATCCGAAGTGGGGAACATTCATCCAATCAAT 539
Query 541 TACCCGCCCACAAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 600
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TACCCGTCCACGAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 599
Query 601 AGATGTCGAGCGTGCTTTTGGAGTCTTGCAGGCTCGGTTTGCTATTATTCGAAACCCAGG 660
||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 600 AGATGTCGAACGTGCTTTTGGAGTCTTGCAGGCTCAGTTTGCTATTATTTGAAACCTAGG 659
Query 661 TCTGTTTTGGGATAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAA 720
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TCTGTTTTGGGATAAAGAGGGAATGGGCAAAATAATGAGAGCATGTATCATATTGCACAA 719
Query 721 TATGATTGTAGAAGATGAACGAG 743
||||||| |||||||| ||||||
Sbjct 720 TATGATTATAGAAGATAAACGAG 742
> AT4G01975.1 | Symbols: | transposable element gene | chr4:858636-862475
REVERSE LENGTH=3840
Length=3840
Score = 385 bits (208), Expect = 4e-106
Identities = 544/703 (77%), Gaps = 36/703 (5%)
Strand=Plus/Plus
Query 59 GACGAATACCTCCGCATGGGCGCAACCACTG-TGAGCCAAGCACTAGAGAATTTTGTAGA 117
||||||||||||||||| || | |||||||| | || || ||||||||||| ||
Sbjct 402 GACGAATACCTCCGCATCGGTGAAACCACTGCTCTTTCATGC-TTAGAGAATTTTACCGA 460
Query 118 TGGCATAATAAATTTATTCCAAGACGAATATTTGAG-GCGGCCTACACGTG-AGGATCTA 175
|| || || ||| || || |||||| | || | ||||||| | | ||||||
Sbjct 461 AGGAATTATTTCTTTGTTTGGTGATGAATATCTAAGAAC-ACCTACACAAGCA-GATCTA 518
Query 176 GAACGGTTACTTC-AT-TCTAGAAAGGA-ACGCGGA-TTTCCGGGAATGGTAGGAAGCAT 231
|| |||| | || || | |||| | || |||||| |||| ||| ||| | ||||||||
Sbjct 519 CAAAGGTTGC-TCGATAT-TAGAGA-GATTCGCGGATTTTCAGGG-ATGATTGGAAGCAT 574
Query 232 TGACTGTATGCATTGGGAGTGGAAGAATTGTCCTACGGCTTGGAAAGGACAGTATTCACG 291
||||||||||||||||||||||||||||| || || |||||||||| |||||| | ||
Sbjct 575 CGACTGTATGCATTGGGAGTGGAAGAATTGCCCCACCTCTTGGAAAGGCCAGTATACGCG 634
Query 292 CGGA-CATGGAAAACCCACTATTGTTTTAGAGGCCGTGGCATCACAAGATTTATGGATTT 350
|| | ||||||||| ||||||||||||||||| || |||||||||||| | ||||| |
Sbjct 635 AGGCTC-TGGAAAACCAACTATTGTTTTAGAGGCAGTCGCATCACAAGATCTCTGGATAT 693
Query 351 GGCATGCtttttttGGGGCTCCAGGTACGTGTAAT-GATATAAATGTTCTTGACCGCTCA 409
| || || |||||||| ||| |||||| | ||| ||||| ||| ||||||| || |||
Sbjct 694 GACACGCGTTTTTTGGACCTCTAGGTACCT-TAAACGATATCAATATTCTTGATCGATCA 752
Query 410 CCGGTGTTTGATGATATATTAGAAGGTCGAGCTCCACGAC-TCACGT-ACGAAGTCAATG 467
|| || |||||||| || ||| |||||||||||||| | | ||| | || ||||| |
Sbjct 753 CCAGTTTTTGATGAAATTTTACAAGGTCGAGCTCCAA-ATGTG-CGTTATGAGGTCAACG 810
Query 468 GAC-ATCAATACAAAATGGGTTATTACCTCACAGATGGTATATATCCGAAGTGGGCAACA 526
||| | | || || ||| ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct 811 GACGAG-AGTATAATTTGGCTTACTATCTCACAGATGGTATATAACCGAAATGGGCGACT 869
Query 527 TTCATCCAATCAATTACC-CGCCCACAAGGACCGAAAG-CATCATTATTTGC-T-AGTTG 582
|| || ||||| ||| | | |||||||| | |||| |||| |||||||| | | |
Sbjct 870 TTTATACAATCTATT-CGACTTCCACAAGGTC-GAAAATCATCTTTATTTGCATCA-TA- 925
Query 583 TCAAGAAGCAGTGAGAAAAGATGTCGAGCGTGCTTTTGGAGTCTTGCAGGCTCGGTTTG- 641
||||||||| || | ||||||||||||||||| |||||||| ||| | |||||||||
Sbjct 926 TCAAGAAGCCGTTCGTAAAGATGTCGAGCGTGCATTTGGAGTATTGTAAGCTCGGTTTCA 985
Query 642 CTATTATTCGAAACCCAGGTCTGT-TTTGGGATAAAGAGCGAATGGGCAAGATAATGAGA 700
| |||||| |||||||| ||| | |||||||||| || ||| || || || ||| |
Sbjct 986 C-ATTATTAAAAACCCAGCTCT-TATTTGGGATAAGGAAAAAATAGGAAATATTATGCGG 1043
Query 701 GCATGTATCATATTGCACAATATGATTGTAGAAGATGAACGAG 743
||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1044 GCATGTATCATATTGCACAATATGATTGTTGAAGACGAACGAG 1086
> AT5G28888.1 | Symbols: | transposable element gene | chr5:10902105-10903015
REVERSE LENGTH=911
Length=911
Score = 294 bits (159), Expect = 7e-79
Identities = 388/494 (79%), Gaps = 33/494 (7%)
Strand=Plus/Plus
Query 270 CTTGGAAAGGACAGTATTCACGCG-GAC-ATGGAAAACCCACTATTGTTTTAGAGGCCGT 327
|||||||||| ||||| | ||||| | | ||||||||| || |||||||||||||| ||
Sbjct 227 CTTGGAAAGGCCAGTA-T-ACGCGAGGCTCTGGAAAACCAACCATTGTTTTAGAGGCAGT 284
Query 328 GGCATCACAAGATTTATGGATTTGGCATGC-tttttttGGGGCTCCAGGTACGTGT-AAT 385
|||||||||||| | ||||| ||||| || ||||||||| |||||||||| | | ||
Sbjct 285 CGCATCACAAGATCTCTGGATATGGCACGCATTTTTTTGGACCTCCAGGTACCT-TAAAC 343
Query 386 GATATAAATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAGGTCGAGCTCCA 445
||||| ||| ||||||| || ||||| || |||||||| || ||| ||||||||||||||
Sbjct 344 GATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGAGCTCCA 403
Query 446 CGACTCACG-TACGAA-GTCAA--TGGACA-TC-A-A-TACAAAATGGGTTATTACCTCA 497
| | || ||| || ||||| | ||| | | | || || ||| ||| || ||||
Sbjct 404 -AATTTGCGTTAC-AAGGTCAACGTCAACAGACGAGAGTATAATTTGGCTTACTATCTCA 461
Query 498 CAGATGGTATATATCCGAAGTGGGCA-ACATTCATCCAATCAATTAC-CCGCCCACAAGG 555
||||||||||||||||||| | || | || || |||||||| ||| | | ||||||||
Sbjct 462 CAGATGGTATATATCCGAAAT-GGAAGACTTTTATCCAATCTATT-CGACTTCCACAAGG 519
Query 556 ACCG-AAAGCATCATTATTTGCTAGT--TGTCAAGAAGCAGTGAGAAAAGATGTCGAGCG 612
|| ||| |||| |||||||| | | | ||||||| | || | ||||||||||||||
Sbjct 520 -TCGAAAATCATCTTTATTTGC-A-TCATATCAAGAAACCGTCCGTAAAGATGTCGAGCG 576
Query 613 TGCTTTTGGAGTCTTGCAGGCTCGGTTTGC-TATTATTCGAAACCCAGGTCTGT-TTTGG 670
||| |||||||| ||||| ||||||||| | |||||| ||||||| ||| | |||||
Sbjct 577 TGCATTTGGAGTATTGCAAGCTCGGTTT-CACATTATTAAAAACCCAACTCT-TATTTGG 634
Query 671 GATAAAGAGCGAAT-GGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGATTGT 729
||||| || ||| || || || ||| || ||||||||||||||||||||||||||||
Sbjct 635 GATAAGGAAAAAATATGG-AATATTATGCGAACATGTATCATATTGCACAATATGATTGT 693
Query 730 AGAAGATGAACGAG 743
||||| |||||||
Sbjct 694 TGAAGACGAACGAG 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36068117546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5