BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481776

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28625.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   612    1e-174


> AT2G28625.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 
proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa 
- 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes 
- 9610 (source: NCBI BLink). | chr2:12272281-12273027 
FORWARD LENGTH=668
Length=668

 Score =  612 bits (331),  Expect = 1e-174
 Identities = 415/452 (92%), Gaps = 19/452 (4%)
 Strand=Plus/Plus

Query  1    CCGTTAGGTTTAACACCTAAGTTTCCAAATTTTCCCGGGAGACAAG-AAGATTCAAAACA  59
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  1    CCGTTAGGTTTAACACCTAAGTTTCAAAATTTTCCCGGGAGACAAGAAAGATTCAAAACA  60

Query  60   CAAAGCagagagagagagagagagagagTGAAATATCAATGGAAAAATGAAGGAAGAGGA  119
            ||||||  ||||||||| | |||||||  |||| ||||||||||||||||| ||||||||
Sbjct  61   CAAAGC--AGAGAGAGA-A-AGAGAGA--GAAAGATCAATGGAAAAATGAACGAAGAGGA  114

Query  120  GAGAGTTGGTTCGTCGTCGTCTTCTTCGTCTTCTCTTCCTGTGAGCTACGGAGTTGACTG  179
            |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  115  GAGAGTTGGTTCATCGTCGTCTTCTTCATCTTCTCTTCCTGTGAGCTACGGAGTTGACTG  174

Query  180  CGAAAAATACGACTTCTCTTCCTCTGTCTCTTCTCTGTCTCAACCATTTTCTCCTGAAGG  239
             |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  175  TGAAAAATATGACTTCTCTTCCTCTGTTTCTTCTCTGTCTCAACCATTTTCTCCTGAAGG  234

Query  240  TTCAAGCAACAAGAGTCAAGTTCTTGAAAACAATTTTTCCTTTGTTTTTTCGTTGGACCA  299
            |||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||||||
Sbjct  235  TTCAAGCAACAAGAGTCACGTTCTTGAAAACAATCTTTCTTTTGTTTTCTCGTTGGACCA  294

Query  300  T-A-A-CAACA-CTA-TCCTCATGTTTCCTAGAGATAGACCATGTTCTTGTCTCCACCAT  354
            | | | ||||| | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  TAATAGCAACAGC-AGT-CTCATGTTTCCTAGAGATAGACCATGTTCTTGTCTCCACCAT  352

Query  355  GTCTTCGAGTGGATACTACAAAGATGTTGTGGCTGCCTTTGTTAGCT-TCCCTTATTCCT  413
            |||||||||||||| ||||| ||||||||||| |||||||||||||| ||  || |||||
Sbjct  353  GTCTTCGAGTGGATTCTACAGAGATGTTGTGGTTGCCTTTGTTAGCTGTCA-TTCTTCCT  411

Query  414  CTTTCAGACTTAA-A--CCATCGTATCTTGTG  442
            ||||||||||||| |  |||| ||||||||||
Sbjct  412  CTTTCAGACTTAACATACCATTGTATCTTGTG  443



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26071522293


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5