BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481779
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28660.1 | Symbols: | Chloroplast-targeted copper chaperone... 1411 0.0
> AT2G28660.1 | Symbols: | Chloroplast-targeted copper chaperone
protein | chr2:12295327-12297117 FORWARD LENGTH=1063
Length=1063
Score = 1411 bits (764), Expect = 0.0
Identities = 968/1059 (91%), Gaps = 43/1059 (4%)
Strand=Plus/Plus
Query 1 TTCCCTTAAAATCAACAGACAGAAAGTGAGTGTTATAGACTTATAGTGCGaaagagagat 60
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 3 TTCCCTTAAAATCAACAGACAGAAAGTGAGTGTTATAGACTTATAGTGAG-AA-AGAGAT 60
Query 61 aaagatagaaa-aaaagagagaaaaagagagaatgagaaTTAGTGATATTTTCTGCTCTT 119
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AAAGATAGAAAGAAAAGAGAGAAAAAGAGAGAATGAGATTTAGTGATATTTTCTGCTCTT 120
Query 120 CTCCGGCATCAACCGCCATACGACCA-AGTACACTTCACCACGACGGAAAGGTGACCGGA 178
||||||||||||||||| ||||| || ||||||||||||||||||||||| || ||||||
Sbjct 121 CTCCGGCATCAACCGCCGTACGA-CATAGTACACTTCACCACGACGGAAATGTTACCGGA 179
Query 179 GGCCGCAGATCCTTT-GAAAGCCACCTCCGGGGCCAAAACCCTAGCAACAAGAAGGACAA 237
|| ||||||| |||| |||||||||||||| ||||||||||||| || |||||||| ||
Sbjct 180 GGTCGCAGAT-CTTTCCAAAGCCACCTCCGGAGCCAAAACCCTAGTAAGAAGAAGGATAA 238
Query 238 AACCGTCCCTTGCTTCTCTTCCGAGATGCCTTTAATCCCTATTCCTCGTCACTTGAGCTG 297
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AACTGTCCCTTGCTTCTCTTCCGAGATGCCTTTAATCCCTATTCCTCGTCACTTGAGCTG 298
Query 298 TAGAAACTCCTTTGAATCTTCAAGCGGGTTTCGTCAGAAGATCGCTTCAGCTCACGGTGG 357
||||||||||||||||||| ||||||||||||||| ||| |||||||| |||| |||| |
Sbjct 299 TAGAAACTCCTTTGAATCTCCAAGCGGGTTTCGTCCGAAAATCGCTTCGGCTCGCGGTAG 358
Query 358 CGATGTTCAAATCCGCCGGAAAAGCTCAGCTGACGTAAGTGACTT---GAG---AA-GA- 409
||||||||||||||||||||||||||| ||||||||||||||||| ||| || ||
Sbjct 359 CGATGTTCAAATCCGCCGGAAAAGCTCTGCTGACGTAAGTGACTTGAGGAGATCAAGGAG 418
Query 410 -----T-C-AAG------G---AGGTATCTTCTT-AAGGATCATAAGACTTTGAAAGAAG 452
| | ||| | ||||||||| || || ||||||||| ||||||||| |
Sbjct 419 TTCTCTGCTAAGCTCATCGTCCAGGTATCTT-TTAAAAGATCATAAGTCTTTGAAAGGTG 477
Query 453 GTGATAAGGACCTCTGGTTATCATCATCGGATCGTTCTAAAGATTTGATTCCTTT-CCGT 511
|||||||||||||||| | | |||||||||||||||||||||||||||| |||| ||||
Sbjct 478 ATGATAAGGACCTCTGG-T-T-ATCATCGGATCGTTCTAAAGATTTGATT-CTTTACCGT 533
Query 512 GACCGTAACGTAActtcttcatcttcatcatcttcttcttcttcttcctcgtcgtct-tc 570
||||| ||||||||||||||| | |||||||||||||| |||||||| || || | | ||
Sbjct 534 GACCGCAACGTAACTTCTTCAGCCTCATCATCTTCTTCGTCTTCTTCATCATC-TTTCTC 592
Query 571 ttcttctGTGACCAATGTTTCATCGCCGGCTCCATCCAGTGATGACCAGGTTGTGGTTTT 630
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 593 TTCTTCTGTGACCAATGTTTCATCGCCGGCTCCATCCACTGATGACCAGGTTGTTGTTTT 652
Query 631 GAGGGTATCGATCCATTGCAAGGGATGTGAAGGGAAGGTTAGAAAGCATATCTCCAAAAT 690
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 653 GAGGGTATCAATCCATTGCAAGGGATGTGAAGGAAAGGTTAGAAAGCATATCTCCAAAAT 712
Query 691 GGAAGGGGTGACGTCATACACCATAGATTTAGCGACAAAGAAGGTGACGGTGGTCGGAAA 750
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 713 GGAAGGGGTGACGTCATACACTATTGATTTAGCGACAAAGAAGGTGACGGTGGTCGGAAA 772
Query 751 GATAACACCTGTCGGAGTAGTAGAAAGCATCTCAAAGGTCAAATTCGCTCAGCTTTGGCC 810
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GATAACACCCGTCGGACTAGTAGAAAGCATCTCAAAGGTCAAATTCGCTCAGCTTTGGCC 832
Query 811 TTCCTCTTCTTCTCCTCCATTTCCTCACATTCCTAATTATTCACTCCTCAAATCTTAATC 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTCCTCTTCTTCTCCTCCATTTCCTCACATTCCTAATTATTCACTCCTCAAATCTTAATC 892
Query 871 TGTTTTCTTGTTATTGAGTTCAAAAGCTACGGTCATTAGACATATGTCATTTTGTGATTC 930
||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 893 TGTTTTCTTGTTATT-AGTTCAAAGGCTATGGTCATTAGACATATGTCATGTTGTGATTC 951
Query 931 GTACCAATGCGACATTAAGGTGGTGTTGTTTAACATATATATACACA--TGTTTGAAGCA 988
||| |||||||||||||| ||||||| |||||||||| ||||||||| |||||| ||||
Sbjct 952 GTATCAATGCGACATTAATGTGGTGTAGTTTAACATACATATACACACATGTTTGTAGCA 1011
Query 989 GGTGGTTTTGtttttttCTTTCCGACAACTAAATTTCAT 1027
||||||||||||||| |||||||||||||||||||||||
Sbjct 1012 GGTGGTTTTGTTTTTCTCTTTCCGACAACTAAATTTCAT 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50334615294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5