BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481782
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28680.1 | Symbols: | RmlC-like cupins superfamily protein ... 1746 0.0
> AT2G28680.1 | Symbols: | RmlC-like cupins superfamily protein
| chr2:12302963-12304799 REVERSE LENGTH=1278
Length=1278
Score = 1746 bits (945), Expect = 0.0
Identities = 1040/1087 (96%), Gaps = 2/1087 (0%)
Strand=Plus/Plus
Query 1 AGTCTTTAACAATGGAGTTGGATCTTTCACCGAGGTTGCC-AAAGAAGGTGTACGGAGGA 59
||| |||||||||||| |||||||| ||||| ||| | || ||| |||||||||||||||
Sbjct 42 AGTGTTTAACAATGGAATTGGATCTATCACCAAGGCTCCCGAAA-AAGGTGTACGGAGGA 100
Query 60 GACGGTGGTTCGTACTTTGCATGGTGCCCTGAAGAGTTGTCAATGCTCCGAGATGGTAAC 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 101 GACGGTGGTTCGTACTTTGCATGGTGCCCTGAAGAGTTGCCAATGCTCCGAGATGGTAAC 160
Query 120 ATTGGAGCCGCTAAGCTCGCTCTTGAGAAGTATGGCTTGGCTCTTCCTCGCTACTCTGAT 179
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 ATTGGAGCCTCTAAGCTCGCTCTTGAGAAGTATGGCTTGGCTCTTCCTCGCTACTCTGAC 220
Query 180 TCTCCTAAGGTCGCTTATGTTCTTCAAGGAGCTGGAACAGCTGGAATCGTGCTCCCTGAG 239
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 TCCCCCAAGGTCGCTTATGTTCTTCAAGGAGCTGGAACAGCTGGAATCGTGCTCCCTGAG 280
Query 240 AAAGAGGAGAAAGTGATAGCAATCAAAAAAGGAGACTCCATAGCTTTACCTTTTGGTGTA 299
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 281 AAGGAGGAGAAAGTGATAGCAATCAAGAAAGGAGACTCCATAGCTTTACCTTTTGGTGTA 340
Query 300 GTGACATGGTGGTTCAACAATGAGGACACTGAGCTAGTCGTTCTCTTCCTCGGTGAGACT 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 341 GTGACATGGTGGTTCAACAATGAGGACACTGAGCTAGTCGTTCTCTTCCTTGGTGAGACT 400
Query 360 CACAAGGGTCACAAAGCAGGACAGTTCACAGACTTTTACCTAACCGGATCCAATGGAATC 419
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 401 CACAAGGGTCACAAAGCTGGACAGTTCACCGACTTTTACCTAACCGGATCCAATGGAATC 460
Query 420 TTCACTGGATTCTCAACTGAGTTTGTTGGCAGAGCTTGGGATCTTGATGAGTCCACCGTG 479
||||| || ||||| ||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 461 TTCACCGGTTTCTCTACTGAGTTTGTTGGCAGAGCTTGGGATCTCGATGAGACCACCGTG 520
Query 480 AAGAAGCTTGTTGGTTCTCAGACCGGTAATGGAATCGTGAAGGTTGATGCGAGCTTGAAG 539
||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 521 AAGAAGCTTGTCGGATCTCAGACAGGTAACGGTATCGTGAAGGTTGATGCGAGCTTGAAG 580
Query 540 ATGCCTGCACCAAAGAAAGGTGATCGTGATGGGTTTGTGTTGAATTGTTTGGAGGCTCCT 599
||||||| ||||||||||||||| || | |||||||| ||||| |||||||||||||||
Sbjct 581 ATGCCTGAACCAAAGAAAGGTGACCGAAAAGGGTTTGTTTTGAACTGTTTGGAGGCTCCT 640
Query 600 CTTGATGTTGACATTAAGGATGGAGGAAGAGTTGTTGTGTTGAACACAAAGAATCTTCCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CTTGATGTTGACATTAAGGATGGAGGAAGAGTTGTTGTGTTGAACACAAAGAATCTTCCT 700
Query 660 TTGGTTGGTGAAGTTGGTTTTGGAGCTGATCTTGTGAGAATCGATGGACATTCTATGTGT 719
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 701 TTGGTTGGTGAAGTTGGATTTGGAGCTGATCTTGTGAGAATCGATGGACACTCTATGTGT 760
Query 720 TCTCCTGGATTCTCTTGTGACTCGGCTCTTCAAGTTACTTACATTGTTGGTGGAAGTGGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TCTCCTGGATTCTCTTGTGACTCGGCTCTTCAAGTTACTTACATTGTTGGTGGAAGTGGT 820
Query 780 CGTGTTCAGATTGTTGGTGCTGATGGGAAGAGAGTTCTTGAGACTCATGTGAAAGCTGGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 CGTGTTCAGATTGTTGGTGCTGATGGGAAGAGAGTTCTTGAGACTCATGTGAAAGCTGGT 880
Query 840 GCTTTGTTCATTGTTCCTAGGTTCTTTGTTGTCTCCAAGATTGCTGATTCTGATGGCTTG 899
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GTTTTGTTCATTGTTCCTAGGTTCTTTGTTGTCTCCAAGATTGCTGATTCTGATGGCTTG 940
Query 900 TCTTGGTTCTCCATTGTGACCACTCCTGATCCAATATTCACGCATTTGGCCGGTAGGACA 959
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 941 TCTTGGTTCTCCATTGTGACCACTCCTGATCCAATATTCACTCATTTGGCCGGGAGGACT 1000
Query 960 TCGGTGTGGAAGGCTTTGTCGCCGGAGGTTTTGCAGGCGGCGTTCAAGGTGGATCCGGAT 1019
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1001 TCGGTGTGGAAGGCTTTGTCGCCGGAGGTTTTGCAGGCAGCGTTCAAGGTGGATCCCGAG 1060
Query 1020 GTGGAGAAGGCTTTCCGATCTAAGAGGACCTCTGATGCCATTTTCTTCCCTCCTTCCAAG 1079
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1061 GTTGAGAAGGCTTTCCGATCTAAGAGGACCTCTGATGCCATTTTCTTCTCTCCTTCCAAC 1120
Query 1080 TAGATAA 1086
|||||||
Sbjct 1121 TAGATAA 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5