BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481786

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28725.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   472    1e-132


> AT2G28725.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G07795.1); 
Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12328605-12328943 
FORWARD LENGTH=339
Length=339

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 299/321 (93%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  1    ATGGAACCAATTCTTGAAAAAATCTCAACTCCTTGGCAAGTTCTTGTTCAAACAGCAACA  60
            |||||||||||||||||||||| |||||| | |||| |||||||||||||||||||||||
Sbjct  1    ATGGAACCAATTCTTGAAAAAACCTCAACACGTTGGGAAGTTCTTGTTCAAACAGCAACA  60

Query  61   TGGACAATACTCCTAATGATCACAGTGTCTTTGGCTTCATTTGCTCCAGAAATGGCGTTT  120
            |||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct  61   TGGACAATTCTCCTAATGATCACAGTGGCTTTGGCTTCATTTGCTCCGGAGATGGCGTTT  120

Query  121  GTGTCGAAAATAAAATCATCTTCCGATGGGTTCGTTAGGATTCCGATGGATTTATCGGGA  180
            ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  121  GTGTCGAAATTAAAGTCATCTTCCGATGGGTTCGTTAGGATTCCGATGGATTTACCGGGA  180

Query  181  GAAATGTTGATCTTACCGTCGGAGATGGTGAAGAACTCATCTTTAGACGTTTTTATACCG  240
            |||||||| ||||| ||||| || ||||||||||| |||| ||||||||||||| |||| 
Sbjct  181  GAAATGTTAATCTTGCCGTCAGAAATGGTGAAGAATTCATATTTAGACGTTTTTTTACCA  240

Query  241  ACGATATTCGCAGGTGTTATGGTCATTGCTTCTGTTTCTTTATTACGATCATGTCTTGGT  300
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  241  ACGATATTCGCAGGAGTTATGGTCATTGCTTCTGTTTCTTTATTACGATCATGTTTTGGT  300

Query  301  ATTGAAGGTGTTGTAGTAGAA  321
            |||||||||||||||| ||||
Sbjct  301  ATTGAAGGTGTTGTAGAAGAA  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5