BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481787

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28740.1 | Symbols: HIS4 | histone H4 | chr2:12329488-123299...   508    1e-143


> AT2G28740.1 | Symbols: HIS4 | histone H4 | chr2:12329488-12329995 
REVERSE LENGTH=508
Length=508

 Score =  508 bits (275),  Expect = 1e-143
 Identities = 303/317 (96%), Gaps = 0/317 (0%)
 Strand=Plus/Plus

Query  2    AAAAATGTCAGGAAGAGGAAAAGGAGGCAAAGGATTAGGCAAAGGAGGAGCAAAGAGACA  61
            ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct  38   AAAAATGTCAGGAAGAGGAAAAGGAGGAAAAGGGTTAGGCAAAGGAGGAGCAAAGAGACA  97

Query  62   CAGAAAAGTTCTTCGTGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGC  121
            |||||| |||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  98   CAGAAAGGTTCTAAGAGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGC  157

Query  122  TCGAAGAGGAGGTGTGAAGAGAATCAGTGGATTGATCTATGAAGAAACGAGAGGTGTGTT  181
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  158  TCGTAGAGGAGGTGTGAAGAGAATCAGTGGATTGATCTATGAAGAAACGAGAGGTGTGTT  217

Query  182  GAAGATCTTTCTAGAGAATGTGATTAGAGATGCTGTTACTTATACAGAGCATGCGAGGAG  241
            |||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  218  GAAGATTTTTCTGGAGAATGTGATTAGAGATGCTGTTACTTACACTGAGCATGCGAGGAG  277

Query  242  GAAGACTGTGACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGAAGAACTCTGTA  301
            |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  278  GAAGACGGTGACTGCTATGGATGTTGTTTATGCCTTGAAGAGACAAGGAAGAACTCTATA  337

Query  302  TGGATTTGGTGGTTGAT  318
            |||||||||||||||||
Sbjct  338  TGGATTTGGTGGTTGAT  354


 Score = 58.4 bits (31),  Expect = 5e-08
 Identities = 33/34 (97%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  317  ATGATAATGATTTAAGTCTTGCGATCAAGAAATT  350
            ||||| ||||||||||||||||||||||||||||
Sbjct  382  ATGATGATGATTTAAGTCTTGCGATCAAGAAATT  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5