BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481790
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28760.2 | Symbols: UXS6 | UDP-XYL synthase 6 | chr2:1233618... 2119 0.0
AT5G59290.2 | Symbols: UXS3, ATUXS3 | UDP-glucuronic acid decar... 821 0.0
AT2G28755.1 | Symbols: | UDP-D-glucuronate carboxy-lyase-relat... 207 2e-52
> AT2G28760.2 | Symbols: UXS6 | UDP-XYL synthase 6 | chr2:12336188-12339027
REVERSE LENGTH=1392
Length=1392
Score = 2119 bits (1147), Expect = 0.0
Identities = 1326/1408 (94%), Gaps = 30/1408 (2%)
Strand=Plus/Plus
Query 1 TTGGTGACCAACTTAAAATTGGGTTTGGTGCATTTCGTAGTCTCACTTTTCGTTCATTTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGGTGACCAACTTAAAATTGGGTTTGGTGCATTTCGTAGTCTCACTTTTCGTTCATTTG 60
Query 61 AAGCTTCGA-TTTTTCTGAAATGGCGACGAATTCTTCTAACGGGATGACGACAACAAAGC 119
||||||| | |||||||||||||||| | |||||||||||||||| |||||| |||||||
Sbjct 61 AAGCTTC-ATTTTTTCTGAAATGGCGTCTAATTCTTCTAACGGGACGACGACGACAAAGC 119
Query 120 CACCACCGATGCCGTCTCCTCTGCGTAATTCCAAGTTTTTTCAGTCAAATATGAGAATCT 179
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 120 CACCACCTATGCCGTCTCCTCTGCGTAATTCCAAGTTTTTTCAGTCGAATATGAGGATCT 179
Query 180 TGGTGACCGGAGGAGCTGGATTCATTGGTTCACATCTCGTTGATAAATTGATGCAAAACG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGGTGACCGGAGGAGCTGGATTCATTGGTTCACATCTCGTTGATAAATTGATGCAAAACG 239
Query 240 AAAAGAATGAAGTAATCGTTGCGGATAATTACTTCACAGGATCAAAAGACAATCTCAAGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAAGAATGAAGTAATCGTTGCGGATAATTACTTCACAGGATCAAAAGACAATCTCAAGA 299
Query 300 AATGGATTGGTCATCCAAGATTTGAGCTCATTCGTCATGATGTGACTGAACAT-TTGTTA 358
|||||||||||||||||||||||||||| |||||||||||||||||||||| | || ||
Sbjct 300 AATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATGATGTGACTGAACCTCTT-TTC 358
Query 359 GTTGAGGTTGATCAAATCTACCATTTAGCATGTCCTGCATCTCCAATTTTCTACAAATAC 418
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 359 GTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATAC 418
Query 419 AACCCCGTTAAGACGATAAAAACAAATGTGATTGGCACACTTAACATGTTAGGACTAGCT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AACCCCGTTAAGACGATAAAAACAAATGTGATTGGCACACTTAACATGTTAGGACTAGCT 478
Query 479 AAGCGAGTCGGCGCAAGAATTTTACTTACTTCGACATCTGAAGTGTACGGTGATCCTTTG 538
|||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 479 AAGCGAGTTGGAGCAAGAATTTTACTTACTTCCACATCTGAAGTGTATGGTGATCCTTTG 538
Query 539 GTTCACCCTCAACCCGAGAGCTATTGGGGAAATGTAAACCCCATCGGTGTTAGAAGTTGT 598
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 539 GTTCACCCTCAAACCGAGAGCTATTGGGGAAATGTAAACCCGATCGGTGTTAGAAGCTGT 598
Query 599 TACGATGAAGGAAAACGTGTTGCAGAAACACTTATGTTTGATTACCATAGGCAACATGGG 658
|| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 599 TATGATGAAGGAAAACGTGTTGCCGAGACTCTTATGTTTGATTACCATAGGCAACATGGG 658
Query 659 ATTGAGATACGCATAGCAAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGAT 718
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATTGAGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGAT 718
Query 719 GGTCGTGTCGTGAGCAACTTCATCGCTCAGGCTCTCAGGGGAGAAGCTCTGACTGTTCAG 778
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 719 GGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGGGGAGAAGCTCTGACTGTTCAG 778
Query 779 AAACCGGGAACACAAACCCGCAGTTTCTGTTATGTTTCCGACATGGTGGAAGGTCTAATG 838
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 779 AAACCGGGAACACAAACCCGCAGTTTCTGTTATGTTTCGGACATGGTGGAAGGTCTAATG 838
Query 839 CGTTTGATGGAAGGGGACCAAACCGGACCGATAAACATAGGCAATCCAGGCGAATTCACG 898
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGTTTGATGGAAGGAGACCAAACCGGACCGATAAACATAGGCAATCCAGGCGAATTCACG 898
Query 899 ATGGTTGAGCTCGCTGAGACGGTTAAAGAGCTTATTAAACCGGACGTGGAGATAAAGATG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGGTTGAGCTCGCTGAGACGGTTAAAGAGCTTATTAAACCGGACGTGGAGATAAAGATG 958
Query 959 GTGGAGAACACACCAGATGATCCAAAACAGAGAAAACCAGACATAAGCAAAGCTAAAGAA 1018
|| ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 959 GTAGAGAACACACCTGATGATCCAAGGCAGAGGAAACCAGACATAAGCAAAGCTAAAGAA 1018
Query 1019 GTTCTTGGTTGGGAACCAAAGGTGAAGCTACGTGAAGGGCTTCCTCTTATGGAAGAAGAT 1078
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1019 GTTCTTGGTTGGGAACCAAAGGTGAAGCTACGTGAGGGGCTTCCTCTTATGGAAGAAGAT 1078
Query 1079 TTTCGTCTAAGGCTTGGTGTTTCGAAGAAGTGAAGCTTATTTTC-AAAACAAAAGAA-A- 1135
||||||||||||||||||||| ||||||||| || ||||||||| |||| ||||||| |
Sbjct 1079 TTTCGTCTAAGGCTTGGTGTTCCGAAGAAGTAAAACTTATTTTCCAAAA-AAAAGAAGAA 1137
Query 1136 GAAAAATAATTGCTATTTTAATTTCATGGAATTGTGTGTTCTTATCgttttgtttgtttg 1195
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1138 GAAAAATAATTGCTATTTTAATTTCATGGAATTGTGTGGTCTTATCATTTTGTTTGTTTG 1197
Query 1196 tttgtttgtttgATACCGGGGTTCCAAGCCGAAGCAAGCGCATAC-TGGTCCCCGAAACA 1254
|||| || | ||||||||||| ||||||||| ||| || | |||||| ||||
Sbjct 1198 TTTGAA------AT-C-GGGGTTCCAAGTCGAAGCAAGTGCACACATA-TCCCCGGAACA 1248
Query 1255 TGTGGATCATGTCTTTTAATCTTTCTCTTTGCATTTTGAGTTTGTAGGGAATAAGCATCC 1314
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1249 TGTGGAGCATGTCTTTTAATCTTTCTCTTTGCATTTTGAGTTTGTAGGAAATAAGCGTCC 1308
Query 1315 TAACGAGGAACATTT-AGGGA-GTGATGTTAC-T-ACT--T-GAATTTTATTACTATGAG 1367
||||||||||||||| ||||| |||||||||| | ||| | ||||||||||| | ||
Sbjct 1309 TAACGAGGAACATTTTAGGGAAGTGATGTTACGTTACTACTTGAATTTTATTA-T--GA- 1364
Query 1368 AATGTAATCAATGAGATGTTTTAAGCTT 1395
| |||||||| |||||||||||||||||
Sbjct 1365 A-TGTAATCAGTGAGATGTTTTAAGCTT 1391
> AT5G59290.2 | Symbols: UXS3, ATUXS3 | UDP-glucuronic acid decarboxylase
3 | chr5:23915530-23917998 REVERSE LENGTH=1358
Length=1358
Score = 821 bits (444), Expect = 0.0
Identities = 798/970 (82%), Gaps = 20/970 (2%)
Strand=Plus/Plus
Query 134 TCTCCTCTGCGTAATTCCAAGTTTTTTCAGTCAAATATGAGAATCTTGGTGACCGGAGGA 193
|||||||| || ||||||||||||| |||| | |||||||| |||||| | | ||||||
Sbjct 97 TCTCCTCTCCGCAATTCCAAGTTTTGTCAGCCCAATATGAGGATCTTGATCTCTGGAGGA 156
Query 194 GCTGGATTCATTGGTTCACATC-TCGTTGATAA-ATTGATGCAAAACGAAAAGAATGAAG 251
||||| ||||||||||| || | | |||||||| || ||| |||| || |||||||| |
Sbjct 157 GCTGGCTTCATTGGTTCTCA-CTTGGTTGATAAGCTT-ATGGAAAATGAGAAGAATGAGG 214
Query 252 TAATCGTTGCGGATAATTACTTCACAGGATCAAAAGACAATCTCAAGAAATGGATTGGTC 311
| | ||||| ||||| || ||||| || |||||||| || |||||||| ||||| ||||
Sbjct 215 TGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGTGGATCGGTC 274
Query 312 ATCCAAGATTTGAGCTCATTCGTCATGATGTGACTGAACATTTGTTAG-TTGAGGTTGAT 370
| || || ||||| || |||||||| ||||| || || | |||||| | | |||||||||
Sbjct 275 ACCCCAGGTTTGAACTTATTCGTCACGATGTTACCGAGCCTTTGTT-GATCGAGGTTGAT 333
Query 371 CAAATCTACCAT-TTAGCATGTCCTGCATCTCCAATTTTCTACAAATACAACCCCGTTAA 429
| || |||||| || || |||||||| ||||| || ||||||||||||||||| |||||
Sbjct 334 CGGATTTACCATCTT-GCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAA 392
Query 430 GACGATAAAAACAAATGTGATTGGCACACTTAACATGTTAGGACTAGCTAAGCGAGTCGG 489
||| || || || ||||||||||| ||||| |||||| | || || || ||||| || ||
Sbjct 393 GACAATCAAGACCAATGTGATTGGTACACTCAACATGCTCGGTCTTGCCAAGCGTGTTGG 452
Query 490 CGCAAGAATTTTACTTACTTCGACATCTGAAGTGTACGGTGATCCTTTGGTTCACCCTCA 549
|||||||||||||| || || || ||||||||||| || |||||| | | ||||||||
Sbjct 453 AGCAAGAATTTTACTAACCTCAACCTCTGAAGTGTATGGAGATCCTCTCATCCACCCTCA 512
Query 550 ACCCGAGAGCTATTGGGGAAATGTAAACCCCATCGGTGTTAGAAGTTGTTACGATGAAGG 609
||| |||||||| ||||||||||| ||||| || || ||| | ||||| || || |||||
Sbjct 513 ACCAGAGAGCTACTGGGGAAATGTCAACCCTATTGGGGTTCGGAGTTGCTATGACGAAGG 572
Query 610 AAAACGTGTTGCAGAAACACTT-ATGTTTGATTACCATAGGCAACATGGGATTGAGATAC 668
|| || || || ||||| ||| |||||||| ||||| || |||||||| ||||| || |
Sbjct 573 CAAGCGGGTAGCCGAAAC-CTTGATGTTTGACTACCACAGACAACATGGCATTGAAATCC 631
Query 669 GCATAGCAAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGTGTCG 728
|||| || || || |||||||||||||||||||| |||||||| |||||||| ||||| |
Sbjct 632 GCATTGCTAGAATCTTCAACACATATGGTCCTCGAATGAACATCGATGATGGGCGTGTTG 691
Query 729 TGAGCAACTTCATCGCTCAGGCTCTCAGGGGAGAAGC-TCTGACTGTTCAGAAACCGGGA 787
||||||||||||| ||||| || ||| |||| || || | |||| ||||||||||||||
Sbjct 692 TGAGCAACTTCATTGCTCAAGCACTCCGGGGTGAGGCAT-TGACAGTTCAGAAACCGGGG 750
Query 788 ACACAAACCCGCAGTTTCTGTTATGTTTCCGACATGGTGGAAGGTCTAATGCGT-TTGAT 846
||||| |||||||||||||||||||| |||||||||||||| || || || ||| || ||
Sbjct 751 ACACAGACCCGCAGTTTCTGTTATGTCTCCGACATGGTGGATGGACTTATCCGTCTT-AT 809
Query 847 GGAAGGGGACCAAACCGGACCGATAAACATAGGCAATCCAGGCGAATTCACGATGGTTGA 906
|||||| | | || || || || ||||| || || ||||| || ||||| ||||| ||
Sbjct 810 GGAAGGCAATGATACTGGCCCTATCAACATCGGTAACCCAGGTGAGTTCACAATGGTGGA 869
Query 907 GCTCGCTGAGACGGTTAAAGAGCTTATTAAACCGGA-CGTGGAGATAAAGATGGTGGAGA 965
|| |||||||||||||| ||||||||| |||| | | | |||||||||||||||||||
Sbjct 870 ACTGGCTGAGACGGTTAAGGAGCTTATT-AACCCAAGCATAGAGATAAAGATGGTGGAGA 928
Query 966 ACACACCAGATGATCCAAAACAGAGAAAACCAGACATAAGCAAAGCTAAAGAAGTTCTTG 1025
|||||||||||||||||| |||||| ||||||||||| || ||||| |||||||| |||
Sbjct 929 ACACACCAGATGATCCAAGACAGAGGAAACCAGACATTAGTAAAGCCAAAGAAGTG-TTG 987
Query 1026 G-TTGGGAACCAAAGGTGAAGCT-ACGTGAAGGGCTTCCTCTTATGGAAGAAGATTTTCG 1083
| |||||| |||||||||||||| | | ||||| |||||||| |||||||||||||| ||
Sbjct 988 GGTTGGGAGCCAAAGGTGAAGCTCA-GAGAAGGACTTCCTCTCATGGAAGAAGATTTCCG 1046
Query 1084 TCTAAGGCTT 1093
|||||||||
Sbjct 1047 ACTAAGGCTT 1056
> AT2G28755.1 | Symbols: | UDP-D-glucuronate carboxy-lyase-related
| chr2:12334172-12334459 REVERSE LENGTH=171
Length=171
Score = 207 bits (112), Expect = 2e-52
Identities = 143/158 (91%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 825 TGGAAGGTCTAATGCGTTTGATGGAAGGGGACCAAA-CCGGACCGATAAACATAGGCAAT 883
|||||||||||| |||| |||||| ||| || |||| |||||||||| ||||||||||||
Sbjct 2 TGGAAGGTCTAAAGCGTCTGATGGCAGGAGA-CAAATCCGGACCGATCAACATAGGCAAT 60
Query 884 CCAGGCGAATTCACGATGGTTGAGCTCGCTGAGACGGTTAAAGAGCTTATTAAACCGGAC 943
||||| |||||| | || |||||||||||||| |||||||||| ||||||||||||||||
Sbjct 61 CCAGGTGAATTCTCAATTGTTGAGCTCGCTGAAACGGTTAAAGCGCTTATTAAACCGGAC 120
Query 944 GTGGAGATAAAGATGGTGGAGAACACACCAGATGATCC 981
|||||||||||||| |||||||||| ||||||||||||
Sbjct 121 GTGGAGATAAAGATTGTGGAGAACATACCAGATGATCC 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5