BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481792
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28790.1 | Symbols: | Pathogenesis-related thaumatin superf... 1264 0.0
> AT2G28790.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr2:12354430-12355431 REVERSE LENGTH=1002
Length=1002
Score = 1264 bits (684), Expect = 0.0
Identities = 778/824 (94%), Gaps = 4/824 (0%)
Strand=Plus/Plus
Query 1 ACACAATGGCTAAAAcctcacttcctctcgccgcctccttcctcctcctcatctccttct 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 14 ACACAATGGCTAAAACCTCTCTTCCTCTCGCCGCCTCCTTCCTCCTCCTCATCTCCTTCT 73
Query 61 cctcAGCCGTAGACACCAGCCGTCTCTTCCTCACCATCTTCAACAACTGTCCCTTCACCG 120
|||| ||||||||||| |||||||||||||||| || ||||||||||||||||||| |
Sbjct 74 CCTCCGCCGTAGACACTTCCCGTCTCTTCCTCACCGTCGTCAACAACTGTCCCTTCACTG 133
Query 121 TCTGGCCAGCCATTCAACCCAACGCTGGCCACCCCGTCCTAGAGAAAGGTGGTTTCGTTC 180
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 134 TCTGGCCAGCCATTCAACCCAACGCCGGCCACCCCGTCCTAGAGAAAGGTGGCTTCGCTC 193
Query 181 TCCCAAAGTACACTCACCGCTCCTTCAACGCTCCAACCACACTCTGGTCCGGTCGCATCT 240
|||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 194 TCCCAACTTTCACTCACCGCTCCTTCAACGTTCCAACCACACACTGGTCCGGTCGCATCT 253
Query 241 GGGCCAGAACC-GGCTGTGCCCACTACAACGGCAAATTCTCCTGCATCACCGGAGACTGC 299
||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 254 GGGCCAGAACCTGG-TGTGCCCACTACAACGGAAAATTCTCCTGCCTCACCGGAGACTGC 312
Query 300 GGAAACCGCCTCGAATGCAACGGTCTCGGCGGCGCACCACCAGCTTCTCTAGCTCAATTC 359
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 313 GGAAACCGCCTGGAATGCAACGGTCTCGGCGGGGCACCACCAGCTTCTCTAGCTCAGTTC 372
Query 360 GACCTCCACCACGGTGGTCACAATGACTTCTCCTCTTACGGCGTCTCTCTCGTCGACGGT 419
||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||
Sbjct 373 GACCTCCACCACGGTGGTCACCACGACTTCTCCTCTTACGGTGTCTCTCTCGTTGACGGT 432
Query 420 TACAACGTTCCAATGACTGTGACTCCTCACGAAGGCCATGGTGTCTGTCCCGTTGTAGGA 479
||||| ||||| ||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 433 TACAATGTTCCGATGACCGTGACTCCTCACGAAGGCCATGGTGTCTGTCCTGTCGTTGGT 492
Query 480 TGCCGTGAAGATCTTATAAAAACATGTCCGGCTCATCTTCAGGTCCGGTCACACAGTGGA 539
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 493 TGTCGTGAAGATCTAATAAAAACGTGTCCGGCTCATCTTCAGGTCCGGTCACACAGTGGA 552
Query 540 CACGTGGTGGCTTGTAAGAGTGGGTGTGAGGCTTTCCATACAGACGAGCTGTGTTGTCGA 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 CACGTGGTGGCTTGTAAGAGTGGGTGTGAGGCTTTCCATACAGACGAGCTGTGTTGTCGT 612
Query 600 GGTCATTACAATAGTCCTAACACGTGTAAAGCTTCGAGCCATTCGTTGTTCTTTAAGCAT 659
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 613 GGTCATTACAATAGCCCTAACACGTGTAAAGCTTCGAGCCATTCGCTGTTCTTTAAGCAT 672
Query 660 GCGTGTCCTTCGAGTTTCACTTTTGCTCATGATAGTCCTTCGCTTATGCATGACTGTTCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 673 GCGTGTCCTTCGAGTTTCACTTTTGCTCATGATAGTCCTTCGCTTATGCATGACTGTGCT 732
Query 720 TCTCCTAGAGAGCTCAAAGTCATCTTCTGCCACTAATGTTTCGGCTATGTTCTAGGGTTA 779
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 733 TCTCCTAGAGAGCTCAAAGTCATCTTCTGCCACTAATGTTTCGGCCATGTTCTAGGGTTA 792
Query 780 TTATCGTAACATCGGACTGATCTTCTCATGACTTT-GTTTGGTT 822
|| ||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 793 TTGTCGTAACATCGGACTGATCTTCTAATG-CTTTTGTTTGGTT 835
Score = 100 bits (54), Expect = 2e-20
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 868 TTTTTATTTCGATTCTATAATGCTTAAACATTGATAGATAAGTTAAAATTAGAATGGTAA 927
|||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 937 TTTTTATTTCGATTCTGTAATGCTTAAACATTGATAGAGAAGTTATAATTGGAATGGTAA 996
Query 928 CAATTT 933
||||||
Sbjct 997 CAATTT 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5