BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481802

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28870.1 | Symbols:  | unknown protein; Has 34 Blast hits to...   566    1e-160


> AT2G28870.1 | Symbols:  | unknown protein; Has 34 Blast hits 
to 34 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:12394256-12394915 REVERSE 
LENGTH=660
Length=660

 Score =  566 bits (306),  Expect = 1e-160
 Identities = 510/598 (85%), Gaps = 55/598 (9%)
 Strand=Plus/Plus

Query  1    ATGGGTTTCTCGGACGCCGGAATTTACATCTCCGACCAAAACAATCTCTGCGAAACGGAA  60
            ||||||||||| ||||| ||||||||| ||||||||| ||||||||||||| |||| |||
Sbjct  83   ATGGGTTTCTCCGACGCTGGAATTTACCTCTCCGACCCAAACAATCTCTGCCAAACCGAA  142

Query  61   CTAGGGTTCTTTCATGAACCCTCTCTAGGGGTTTCAGACCGGAGCGTTCACACACCTCCA  120
            ||||| |||||||||||||| ||||||||| ||||||||| ||||| || ||||     |
Sbjct  143  CTAGGTTTCTTTCATGAACCATCTCTAGGGTTTTCAGACCAGAGCGATC-CACA-----A  196

Query  121  CAACAAGAG-TCTCACATCATTCCTCCTACATATCAAGAATTACAAGACCAACATCAAGA  179
             |||  ||| || ||||||| |||||||| |||||||||||||||||      |||| ||
Sbjct  197  -AAC--GAGTTC-CACATCACTCCTCCTATATATCAAGAATTACAAG------ATCAGGA  246

Query  180  TCTTGAAACTAAATCCCAAGAGAC-AAGTAATTGCTCATGTAAAGAAGGAGCAAACTTC-  237
            ||||||| |||||||||||||||| || |||||||||| | ||||||||||||| | || 
Sbjct  247  TCTTGAACCTAAATCCCAAGAGACGAA-TAATTGCTCACGCAAAGAAGGAGCAACCGTCA  305

Query  238  ---AAG-AG-AGAAGAAG-A-A-TATTATTGCAAGACTCCGACACGTTCCGACCAGATTC  289
               ||| || |||||||| | |  ||||||| || |||||||| ||||| ||||||||||
Sbjct  306  AGAAAGAAGAAGAAGAAGAAGACGATTATTGTAAAACTCCGACTCGTTCAGACCAGATTC  365

Query  290  TCCCGGCAATACCAAGAATTTGTCCACCGGCGCCGAGGAAACCTAAAAGAGTCCCGTCGA  349
            || |||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  366  TCTCGGCGATGCCAAGAATTTGTCCACCGGCGCCTAGGAAACCTAAAAGAGTCCCGTCGA  425

Query  350  GAAGCCTTAAGGTTAGAAATTCATATAGAAGCAAGAGAATGATCATTCTAAATGTTTCTA  409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  426  GAAGCCTTAAGGTTAGAAATTCATATAGAAGCAAGAGAATGATCATTCTAAATGTTTCTA  485

Query  410  GAGAGATTGATTGTTTGTTTAATCCAACATCTCTATGTAACAAAGTTAAGAAAGCCAGAT  469
            ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct  486  GAGAGATTGATTGTTTGTTTAATCCAACATCACTATGTAACAAAATTAAGAAAGCCAGAT  545

Query  470  ACAT-T---GTAT---A---AC-GTA---G-----C-TA-C--C-TAATAACCAAATTGT  505
            |||| |   || |   |   || |||   |     | || |  | |||||||||||||||
Sbjct  546  ACATCTAATGTTTTGTACGTACTGTATTTGTATAACGTAGCAACCTAATAACCAAATTGT  605

Query  506  AATACACTACGAGTTTACATAATGTAGTAATGAGAAACTATCTATTTCACTTTTGTTT  563
            |||||||||||| |||||||||||||||   ||||||||||||||||||||||| |||
Sbjct  606  AATACACTACGACTTTACATAATGTAGT---GAGAAACTATCTATTTCACTTTTATTT  660



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27025971086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5