BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481802 Length=563 Score E Sequences producing significant alignments: (Bits) Value AT2G28870.1 | Symbols: | unknown protein; Has 34 Blast hits to... 566 1e-160 > AT2G28870.1 | Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12394256-12394915 REVERSE LENGTH=660 Length=660 Score = 566 bits (306), Expect = 1e-160 Identities = 510/598 (85%), Gaps = 55/598 (9%) Strand=Plus/Plus Query 1 ATGGGTTTCTCGGACGCCGGAATTTACATCTCCGACCAAAACAATCTCTGCGAAACGGAA 60 ||||||||||| ||||| ||||||||| ||||||||| ||||||||||||| |||| ||| Sbjct 83 ATGGGTTTCTCCGACGCTGGAATTTACCTCTCCGACCCAAACAATCTCTGCCAAACCGAA 142 Query 61 CTAGGGTTCTTTCATGAACCCTCTCTAGGGGTTTCAGACCGGAGCGTTCACACACCTCCA 120 ||||| |||||||||||||| ||||||||| ||||||||| ||||| || |||| | Sbjct 143 CTAGGTTTCTTTCATGAACCATCTCTAGGGTTTTCAGACCAGAGCGATC-CACA-----A 196 Query 121 CAACAAGAG-TCTCACATCATTCCTCCTACATATCAAGAATTACAAGACCAACATCAAGA 179 ||| ||| || ||||||| |||||||| ||||||||||||||||| |||| || Sbjct 197 -AAC--GAGTTC-CACATCACTCCTCCTATATATCAAGAATTACAAG------ATCAGGA 246 Query 180 TCTTGAAACTAAATCCCAAGAGAC-AAGTAATTGCTCATGTAAAGAAGGAGCAAACTTC- 237 ||||||| |||||||||||||||| || |||||||||| | ||||||||||||| | || Sbjct 247 TCTTGAACCTAAATCCCAAGAGACGAA-TAATTGCTCACGCAAAGAAGGAGCAACCGTCA 305 Query 238 ---AAG-AG-AGAAGAAG-A-A-TATTATTGCAAGACTCCGACACGTTCCGACCAGATTC 289 ||| || |||||||| | | ||||||| || |||||||| ||||| |||||||||| Sbjct 306 AGAAAGAAGAAGAAGAAGAAGACGATTATTGTAAAACTCCGACTCGTTCAGACCAGATTC 365 Query 290 TCCCGGCAATACCAAGAATTTGTCCACCGGCGCCGAGGAAACCTAAAAGAGTCCCGTCGA 349 || |||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 366 TCTCGGCGATGCCAAGAATTTGTCCACCGGCGCCTAGGAAACCTAAAAGAGTCCCGTCGA 425 Query 350 GAAGCCTTAAGGTTAGAAATTCATATAGAAGCAAGAGAATGATCATTCTAAATGTTTCTA 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 426 GAAGCCTTAAGGTTAGAAATTCATATAGAAGCAAGAGAATGATCATTCTAAATGTTTCTA 485 Query 410 GAGAGATTGATTGTTTGTTTAATCCAACATCTCTATGTAACAAAGTTAAGAAAGCCAGAT 469 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 486 GAGAGATTGATTGTTTGTTTAATCCAACATCACTATGTAACAAAATTAAGAAAGCCAGAT 545 Query 470 ACAT-T---GTAT---A---AC-GTA---G-----C-TA-C--C-TAATAACCAAATTGT 505 |||| | || | | || ||| | | || | | ||||||||||||||| Sbjct 546 ACATCTAATGTTTTGTACGTACTGTATTTGTATAACGTAGCAACCTAATAACCAAATTGT 605 Query 506 AATACACTACGAGTTTACATAATGTAGTAATGAGAAACTATCTATTTCACTTTTGTTT 563 |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 606 AATACACTACGACTTTACATAATGTAGT---GAGAAACTATCTATTTCACTTTTATTT 660 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27025971086 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5