BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481803
Length=3029
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28880.1 | Symbols: emb1997, ADCS | para-aminobenzoate (PABA... 4434 0.0
> AT2G28880.1 | Symbols: emb1997, ADCS | para-aminobenzoate (PABA)
synthase family protein | chr2:12398745-12403528 REVERSE
LENGTH=3084
Length=3084
Score = 4434 bits (2401), Expect = 0.0
Identities = 2750/2917 (94%), Gaps = 30/2917 (1%)
Strand=Plus/Plus
Query 1 TTTCTCTTCCTCCTTC-TCTTCACCATTGATTCCTCTCAGAGC---A--AAAAGCTTCTT 54
||||||||||||| || || ||||||||||||||||||||||| | |||||||||||
Sbjct 3 TTTCTCTTCCTCCCTCTTCCTCACCATTGATTCCTCTCAGAGCTAAAGCAAAAGCTTCTT 62
Query 55 CCATTTTCTT-CTTCATACGATTCGTTGCTTTTGAATCTC--CATCACTTGGTTTCGTTT 111
||||| |||| ||| ||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 63 CCATTGTCTTACTTTATACGATTCGTTGCTTTTGAATCTCTTC-TCACTTGGCTTCGTTT 121
Query 112 CTAAACGTAAGTCATGAACATGTATTTTTCGTTTTGTTCAACTTCTTCTGAGCTT-TCAT 170
||||||| ||| ||||||||| ||||||||||||||||||| ||||||||| || ||||
Sbjct 122 CTAAACG--AGTTATGAACATGAATTTTTCGTTTTGTTCAACATCTTCTGAG-TTATCAT 178
Query 171 ATCCAAGTGAAAATGTTCTGAGATTTTCGGTTGCGAGGCGGTTGTTCTCTCCTAAATGGA 230
|||||||||| ||||||||||||||||| ||||| || ||| |||| |||||||||||||
Sbjct 179 ATCCAAGTGAGAATGTTCTGAGATTTTCTGTTGCAAGTCGGCTGTTTTCTCCTAAATGGA 238
Query 231 AGAATGGTTTCATTAGTTTACCTCATCGT-G-----GTACGAGGAAGGTTCTT-GCGGCA 283
|||| ||||||||||||||||| |||| | ||||||||||||| || ||| ||
Sbjct 239 AGAAAAGTTTCATTAGTTTACCTTGTCGTAGTAAAACTACGAGGAAGGTT-TTGGCGTCA 297
Query 284 AGCCGTTTTGTGCCAGGGAAATTGGAAGATTCGGCGGTTGTTAAGAAGAGTTTACCGATA 343
||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct 298 AGCCGTTATGTGCCAGGGAAATTGGAAGATTTGTCGGTTGTTAAGAAGAGTTTACCGAGA 357
Query 344 AGAGAACCTGTAGAGAGGATTGGTGTTGTGAGGACTTTGTTGATTGATAATTATGATAGT 403
||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 AGAGAACCTGTGGAGAAGCTTGGTTTTGTGAGGACTTTGTTGATTGATAATTATGATAGT 417
Query 404 TATACATTCAATATATATCAGGCACTGAGTACTATTAATGGAGTGCCTCCTGTGGTTATT 463
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 418 TATACATTCAATATATATCAGGCTCTGAGTACTATTAATGGAGTGCCTCCTGTCGTTATT 477
Query 464 CGAAATGATGAGTGGACGTGGGAAGAAGCTTACCATTACTTATATGAAGATGTTGCTTTC 523
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CGGAATGATGAGTGGACGTGGGAAGAAGCTTACCATTACTTATATGAAGATGTTGCTTTT 537
Query 524 GATAATATTGTCATATCGCCCGGACCTGGTTCGCCGATGTGTCCAGCTGATATAGGAATA 583
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 538 GATAATATTGTTATATCGCCTGGACCTGGTTCGCCTATGTGTCCAGCTGATATAGGAATA 597
Query 584 TGTCTTCGTCTTTTGCTTGAATGTCGTGATATTCCAATTCTAGGCGTCTGCCTTGGCCAC 643
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 598 TGTCTTCGTCTTTTGCTTGAATGCCGTGATATCCCAATTCTAGGCGTCTGCCTTGGCCAC 657
Query 644 CAGGCACTGGGTTATGTCCATGGAGCTCATGTGGTGCATGCCCCGGAACCAGTCCATGGA 703
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGGCACTAGGTTATGTCCATGGAGCTCATGTGGTGCATGCCCCGGAACCAGTCCATGGA 717
Query 704 CGGTTGAGTGGGATTGAACATGATGGGAACATACTGTTTTCTGATATTCCATCTGGGAGA 763
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 718 CGGTTGAGTGGGATTGAACATGATGGGAACATATTGTTTTCTGATATTCCATCCGGGAGA 777
Query 764 AACTCTGATTTCAAGGTTGTTAGATACCATTCGCTGATCATAGATAAGGAATCACTACCA 823
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 778 AACTCTGATTTTAAGGTTGTTAGATACCATTCACTGATCATAGATAAGGAATCACTACCA 837
Query 824 AAGGAACTTGTACCAATAGCGTGGACGATTTATGATGACACTGGCTCTTTCTCTGAGAAG 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGGAACTTGTACCAATAGCGTGGACGATTTATGATGACACTGGCTCTTTCTCTGAGAAG 897
Query 884 AAGTTG-TGTGTTCCTGTGAAGAACACTGGGAGCCCACT-G--AATGGATCTGTCATTCC 939
|| || |||||||||||||| ||||||||||||||||| | || ||||||||||||||
Sbjct 898 AA-TTCCTGTGTTCCTGTGAATAACACTGGGAGCCCACTTGGGAACGGATCTGTCATTCC 956
Query 940 TGTTTCAGAAAAGTTGGAAAATGGAAGCCATTGGCCTTCGTCCCATGTTGATGAGAAACA 999
||||||||||||||| |||||| |||| ||||||||||||||||||||| ||| ||||||
Sbjct 957 TGTTTCAGAAAAGTTAGAAAATCGAAGTCATTGGCCTTCGTCCCATGTTAATGGGAAACA 1016
Query 1000 AGATAGACACATTCTCATGGGCATCATGCATTCTTCTTTTCCCCATTATGGTTTACAGTT 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGATAGACACATTCTCATGGGCATCATGCATTCTTCTTTTCCCCATTATGGTTTACAGTT 1076
Query 1060 TCATCCAGAGAGTATTGCTACTACCTATGGTAGTCAGTTATTTAAAAATTTCAAAGATAT 1119
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1077 TCATCCAGAAAGTATTGCTACTACCTATGGTAGTCAGTTATTTAAAAATTTCAAGGACAT 1136
Query 1120 AACTGTGGATTACTGGAGTCGGTGCAAATCTACATCCCTGCGTCGAAGAAACATAAATGA 1179
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AACTGTGAATTATTGGAGTCGGTGCAAATCTACATCCCTGCGTCGAAGAAACATAAATGA 1196
Query 1180 CACTGCAAACATGCAGGTGCCTGGTGCTACTCAATTGCTGAAAGAACTTTCCAGAACTAG 1239
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1197 CACTGCAAACATGCAGGTGCCTGATGCTACTCAATTGCTGAAAGAACTTTCTAGAACTAG 1256
Query 1240 ATTTACAGGAAATGGTTCTAGCTATTATGGGAACACTAAGAAGTCTCTGTTTGCTGCCAA 1299
|| ||||||||||||||||||||||| ||||||| ||||| ||||||||| |||||||
Sbjct 1257 ATGTACAGGAAATGGTTCTAGCTATTTTGGGAACCCTAAG---TCTCTGTTTTCTGCCAA 1313
Query 1300 GACAAATGGTGTAGACGTCTTCGATCTGGCGGATTTATCATATCCAAAACCTCATGCAAA 1359
||||||||||||||||||||| ||| ||| ||||| ||||||||||||||| ||| ||||
Sbjct 1314 GACAAATGGTGTAGACGTCTTTGATATGGTGGATTCATCATATCCAAAACCACATACAAA 1373
Query 1360 ATTGCTGAGGTTGAAATGGAAGAAGCATGAACGTCTTGCACATAAAGTTGGTGGAGCAAA 1419
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1374 ATTGCTGAGGTTGAAATGGAAGAAGCATGAACGTCTTGCGCATAAAGTTGGTGGAGTAAG 1433
Query 1420 AAATGTATTCATGGAACTCTTTGGCAAGAATAAAGGGAATGATACGTTTTGGCTGGATAC 1479
|||| |||| |||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 1434 AAATATATTTATGGAACTCTTTGGCAAGAATAGAGGAAATGATACTTTTTGGCTGGATAC 1493
Query 1480 TTCTTCTACTGACAAGGCTAGAGGACGATTTTCTTTCATGGGCGGTAAAGGTGGATCTCT 1539
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TTCTTCTAGTGACAAGGCTAGAGGACGATTTTCTTTCATGGGCGGTAAAGGTGGATCTCT 1553
Query 1540 CTGGAAGCAATTGACATTTAGTTTATCTGATCAAAGCGAGGGTATATCAAAACATGCGGG 1599
|||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 1554 CTGGAAGCAATTGACATTTAGTTTATCTGATCAAAGTGAGGTTACATCAAAACATGCGGG 1613
Query 1600 ACATCTTCTGATTGAAGATTCTCAGAGTTCTACTGAGAAAGGATTCTTGGAAGAAGGCTT 1659
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1614 ACATCTTCTGATTGAAGATTCTCAGAGTTCTACTGAGAAACAATTCTTGGAAGAAGGCTT 1673
Query 1660 TCTTGATTTTCTCCGTAAGGAGCTTTCATCTATCTCTTATGATGAGAAGGACTTCGCAGG 1719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1674 TCTTGATTTTCTCCGTAAGGAGCTTTCATCTATCTCTTATGATGAGAAGGACTTCGAAGA 1733
Query 1720 GTTGCCTTTTGATTTTTGCGGTGGATACGTAGGTTGTATTGGGTATGATATTAAAGTCGA 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1734 GTTGCCTTTTGATTTTTGCGGTGGATACGTAGGTTGTATTGGGTATGATATTAAAGTGGA 1793
Query 1780 ATGTGGAATGCCAATTAATCGTCACAAATCCAACGCTCCAGATGCATGTTTCTTCTTTGC 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 ATGTGGAATGCCAATTAATCGTCACAAATCCAACGCTCCAGATGCATGTTTCTTCTTTGC 1853
Query 1840 AGATAATGTTGTTGCCATTGATCATCAACTTGATGATGTATATGTATTATCGCTTTACGA 1899
||||||||||| ||||||||||||||||| ||||| || ||| ||||||||||||||||
Sbjct 1854 GGATAATGTTGTCGCCATTGATCATCAACTCGATGACGTTTATATATTATCGCTTTACGA 1913
Query 1900 AGAGGGAACCGCAGAAACCTCTTTCCTGAAGGATACTGAAGAGAAGCTCATTAGCCTGAT 1959
||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1914 AGAGGGAACTGCAGAAACCTCTTTCCTGAATGATACTGAAGAGAAGCTCATTAGCTTGAT 1973
Query 1960 GGGTTCGTCCACAAGAAAGTTTGAGGATCAGACTCTTCCAGTTATAGATTCATCTCAATG 2019
||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1974 GGGTTTGTCCACAAGAAAGTTGGAGGATCAAACTCTTCCAGTTATAGATTCATCTCAATC 2033
Query 2020 CAAAACAAGTTTTGTTCCTGACAAATCCCGAGAACAGTATATAAACGATGTTCAGAGCTG 2079
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2034 CAAAACAAGTTTTGTTCCTGACAAATCCCGAGAGCAGTATATCAACGATGTTCAGAGCTG 2093
Query 2080 TATGAAGTATATCAAAGACGGGGAAAGCTACGAGCTTTGTCTCACTACTCAGAACAGAAG 2139
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2094 TATGAAGTATATCAAAGACGGGGAGAGCTACGAGCTTTGTCTCACTACTCAAAACAGAAG 2153
Query 2140 GAAAATAGGCAATGCTGATCCTTTGGGACTTTATCTCCACCTGAGAGAGAGGAATCCAGC 2199
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 GAAAATAGGAAATGCTGATCCTTTGGGACTTTATCTCCACCTGAGAGAGAGGAATCCAGC 2213
Query 2200 ACCATATGCAGCCTTTCTCAACTTCTCAAATGCAAATTTGTCTTTATGCTCTTCGTCCCC 2259
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2214 ACCATATGCAGCATTTCTCAACTTCTCAAATGCAAATCTGTCTTTATGCTCTTCGTCCCC 2273
Query 2260 TGAAAGGTTTCTTAAGCTGGACAGAAATGGAATGCTAGAAGCAAAGCCGATTAAGGGTAC 2319
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2274 TGAAAGGTTTCTTAAGCTGGACAGAAATGGAATGCTTGAAGCAAAGCCGATTAAGGGTAC 2333
Query 2320 TATAGCTCGTGGCTCCACGCCTGAAGAAGATGAACTTCTTAAATTGCAATTGAAACTCAG 2379
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2334 TATAGCTCGTGGCTCCACGCCTGAAGAAGATGAATTTCTTAAATTGCAATTGAAACTCAG 2393
Query 2380 TGAGAAGAATCAAGCCGAGAATCTAATGATTGTCGACCTTCTACGGAATGATCTCGGTCG 2439
|||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 2394 TGAGAAGAATCAAGCCGAGAATCTGATGATTGTTGACCTTCTAAGGAATGATCTCGGTCG 2453
Query 2440 TGTCTGTGAGCCAGGCTCAGTCCATGTACCTAACCTCATGGACGTGGAATCATACACAAC 2499
|||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2454 TGTCTGTGAGCCTGGCTCAGTCCATGTACCTAACCTCATGGATGTAGAATCATACACAAC 2513
Query 2500 AGTACACACTATGGTGAGCACGATCCGCGGATTGAAAAAACCAGATATTAGTCCAGTGGA 2559
|||||| || ||||||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct 2514 AGTACATACAATGGTGAGCACGATCCGTGGACTGAAAAAAACAGATATTAGTCCAGTGGA 2573
Query 2560 GTGTGTAAGAGCAGCTTTCCCTGGCGGTTCAATGACCGGTGCCCCAAAACTAAGATCCGT 2619
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2574 ATGTGTAAGAGCTGCTTTCCCTGGCGGTTCAATGACTGGTGCCCCAAAACTAAGATCTGT 2633
Query 2620 TGAGATTCTCGATTCTCTAGAGAACTGTTCAAGAGGGCTTTACTCTGGCTCAATCGGGTA 2679
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2634 TGAGATTCTCGATTCTCTAGAGAACTGTTCGAGAGGCCTTTACTCTGGCTCAATCGGGTA 2693
Query 2680 TTTCTCGTATAACGGTACATTTGATCTGAACATTGTTATAAGAACAGTAGTGATACATGA 2739
|||||||||||| ||||| ||||||||||| ||||| |||||||||||| | ||||||||
Sbjct 2694 TTTCTCGTATAATGGTACGTTTGATCTGAATATTGTGATAAGAACAGTAATAATACATGA 2753
Query 2740 GGATGAAGCTTCCATTGGAGCAGGAGGAGCAATAGTTGCATTATCAAACCCAGAAGATGA 2799
||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct 2754 AGATGAAGCTTCCATTGGAGCAGGAGGAGCTATTGTTGCATTATCAAGTCCAGAAGATGA 2813
Query 2800 GTTTGAGGAAATGATTCTTAAGACTAAAGCTCCTGCTAATGCAGTTATGGAGTTTTGTAG 2859
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2814 GTTTGAGGAAATGATTCTTAAGACTAGAGCTCCTGCTAATGCAGTCATGGAGTTTTGTAG 2873
Query 2860 TGATCAGAGGAGACAATAGTTTTGTTTCTTCAAAGTT 2896
||||||||||||||||||||||||| |||||||||||
Sbjct 2874 TGATCAGAGGAGACAATAGTTTTGTCTCTTCAAAGTT 2910
Score = 171 bits (92), Expect = 5e-41
Identities = 108/115 (94%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 2916 TTTTTTATAGAGAAAAGAGTGATTTACCTCAAATTCAAAAACTA-ATTGTTGTTGTAAGA 2974
|||||||||| ||||||||||||||| ||||||||||||||||| | | | |||||||||
Sbjct 2972 TTTTTTATAG-GAAAAGAGTGATTTATCTCAAATTCAAAAACTACA-TATAGTTGTAAGA 3029
Query 2975 TTATTTTTTAAAGATAGTTATTTGATTGATGTCTCTTTAATAAAAGATAGTTTTT 3029
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3030 TTATTTTTTAAAGATAGTTATTTGATTGAAGTCTCTTTAATAAAAGATAGTTTTT 3084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150601162886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5