BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481804
Length=2247
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28890.1 | Symbols: PLL4 | poltergeist like 4 | chr2:1240559... 3350 0.0
AT1G07630.1 | Symbols: PLL5 | pol-like 5 | chr1:2349097-2351692... 1245 0.0
> AT2G28890.1 | Symbols: PLL4 | poltergeist like 4 | chr2:12405596-12408235
REVERSE LENGTH=2341
Length=2341
Score = 3350 bits (1814), Expect = 0.0
Identities = 2082/2205 (94%), Gaps = 44/2205 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaTCATTTTTCTTGCACACAAGTCAActctatctctct--catcttcttcttcaa 58
|||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1 AAAAAAATCATTTTCCTTGCACACAAGTCAACTCTCTCTCTCTCACATCTTCTTCTTCAA 60
Query 59 cctctgtctc-tcattt-tctctACCATGGATCAACAATCTCTAATCTAAAAAACACGTT 116
|||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||
Sbjct 61 CCTCTGTCTCTTCATTTCTCTCTACCATGGATCAACAATCTCTAATCT-AAAAACACTTT 119
Query 117 CCTTGTATCTAAATTCTCAATC-ACaaaa-aaaaa-----------------a-aTGGGT 156
| ||||||||||| |||| ||| ||||| ||||| | ||||||
Sbjct 120 CGTTGTATCTAAACTCTCCATCTCCAAAAGAAAAACTTTTTTTCTTCTTCTCAGATGGGT 179
Query 157 AACGGAATCGGGAAGCTGACG-AAATGTTTCACCGGAGAAACTCGCCGGAACAAAAAGTC 215
||||||||||||||||| | | |||||||| ||||||| || | ||||||||||| |
Sbjct 180 AACGGAATCGGGAAGCT-AAGTAAATGTTTGACCGGAGGTGCTGGTCGGAACAAAAAACC 238
Query 216 TGAGTTATCAATTCTCGAACCAGATCCTTTAGACGAAGGTTTAGGTCATTCTTTCTGTTA 275
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 239 CGAGTTATCAATTCTCGAACCAGATCCTTTAGACGAAGGGTTAGGACACTCTTTCTGTTA 298
Query 276 CGTTAGACCCGACCCGACCCGAGTTTCGTCTTCAAAAGTTCACTCAGAAGAAGAAACGAC 335
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGTCAGACCAGACCCGACACGAGTTTCGTCTTCAAAAGTTCACTCAGAAGAAGAAACGAC 358
Query 336 GACGTTCCGTACAATCTCCGGCGCTTCCGTTAGTGCTAACGCCGCCACACCACTCTCTAC 395
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 359 GACGTTCCGTACAATCTCCGGCGCTTCCGTTAGTGCTAACACCGCCACACCACTCTCTAC 418
Query 396 TTCTTTATATGATCCTTACGGACATATCGATAGAGCCGCCGCGTTCGAAAGCACGACGTC 455
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTCTCTCTATGATCCTTACGGACATATCGATAGAGCCGCCGCGTTCGAAAGCACGACGTC 478
Query 456 GTTTTCGTCGATTCCTTTGCAACCGATTCCGAGAAGTTCCTGTCCGATTGTACCCGGTTC 515
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 GTTTTCGTCGATTCCTTTGCAACCGATTCCGAGAAGTTCCGGTCCGATTGTACCCGGTTC 538
Query 516 GGGTCCTTTAGAAAGAGGGTTTCTT-TCCGGTCCGATTGAAAGAGGTTTCATGTCCGGTC 574
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 539 GGGTCCTTTAGAAAGAGGGTTT-TTATCCGGTCCGATTGAAAGAGGTTTCATGTCCGGTC 597
Query 575 CACTTGATGGTTCTTCCGGTCCGATTGCTGGTAAAACCGGTTCTGATCAATTTCAGCGAA 634
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 598 CACTTGATGGTTCTTCCGGTCCGATTGATGGTAAAACCGGTTCTGATCAATTTCAGAGAA 657
Query 635 GTTTCTCTCATGGTTTAGCTAATCTCCGGGTCGGGTCGAGAAAAGGATCTTTAGTTCGGG 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTTTCTCTCATGGTTTAGCTAATCTCCGGGTCGGGTCGAGAAAAGGATCTTTAGTTCGGG 717
Query 695 TTCTCCGTCGTGCAATTTCGAAGACGATTACTAGAGGACAAAACTCTATTGTTGCTCCGA 754
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 TTCTCCGTCGTGCAATTTCGAAGACGATTACTAGAGGACAGAACTCTATTGTTGCTCCGA 777
Query 755 TCAAATCGGTTAAAGAACCCGATTGGGTATTCGGGTCGGATAAAACCCGGATCCAGAACC 814
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 778 TCAAACCGGTTAAAGAGCCCGATTGGGTATTCGGGTCGGATAAAACCCGGAT-------C 830
Query 815 AACACCAGATCGAGAATAACCTCACTGTTAATAGCTTGAATTTTAGTAGTGAAGGAAGTT 874
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 831 --CATCAGATCGAGAATAATCTCACTGTTAATAGCTTGAATTTTAGTAGTGAAGGAAGTT 888
Query 875 TATTAGACGACGACGTTTCGTTAGAAAGCCAGAATCTTCAATGGGCACAAGGTAAAGCCG 934
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 889 TACTAGACGACGACGTTTCGTTAGAGAGCCAGAATCTTCAATGGGCACAAGGTAAAGCCG 948
Query 935 GTGAGGATCGTGTACATGTAGTTGTATCGGAAGAACATGGATGGCTCTTCGTTGGAATCT 994
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 949 GTGAGGATCGTGTACATGTGGTTGTATCGGAAGAACATGGATGGCTTTTCGTTGGAATCT 1008
Query 995 ACGATGGATTCAACGGTCCAGATGCACCTGACTATTTACTCTCTCATTTATATCCAGCCG 1054
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1009 ACGATGGATTCAACGGTCCAGATGCGCCGGACTATTTACTCTCTCATTTATATCCAGCCG 1068
Query 1055 TTCATCGTGAGCTTAAAGGATTATTATGGGACGATCCTAAAACAGATGCAAAATCTTCCG 1114
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1069 TTCATCGTGAGCTTAAAGGATTGTTATGGGACGATCCCAAAACAGATGCAAAATCTTCCG 1128
Query 1115 ATGAAGCTGATGTAGAGAATCGTGACTCGAGTTCTGAGAAAAAGTCAAAGAATTGGGAAG 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 ATGAAGCTGATGTAGAGAATCGTGACTCGAGTTCTGAGAAAAAGTCAAAGAATTGGGAAG 1188
Query 1175 AAAGTCAACGACGGTGGAGATGTGAGTGGGATCGAGATCTTGACCGTTTATTGAAAGATC 1234
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1189 AAAGTCAACGACGGTGGAGATGTGAATGGGATCGAGATCTTGACCGTTTACTGAAAGATC 1248
Query 1235 GGAGTAATGGGTCGGATCTAGATCCGGATCCGAATTCGTCTGATGTATTGAAAGCTTTGT 1294
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1249 GGAGTAATGGGTTGGATCTAGATCCGGATCCGAATTCGTCTGATGTACTGAAAGCTTTGT 1308
Query 1295 CACAAGCCTTGAGGAAGACGGAAGAAGCTTATTTGGAGAATGCAGATATGATGCTCGACG 1354
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 CACAAGCTTTGAGGAAGACGGAAGAAGCTTATTTGGAGAATGCAGATATGATGCTCGACG 1368
Query 1355 AAAATCCTGAACTAGCTTTAATGGGTTCTTGTGTTCTTGTTA-TGTTGATGAAAGGTGAA 1413
||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 1369 AAAATCCTGAACTAGCTTTAATGGGTTCTTGTGTT-TTGGTAATGTTGATGAAAGGTGAA 1427
Query 1414 GATGTTTATTTGATGAATGTTGGTGATAGTAGAGCTGTTCTTGGGCAAAAAGCTGAGAGT 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 GATGTTTATTTGATGAATGTTGGTGATAGTAGAGCTGTTCTTGGGCAAAAAGCTGAGAGT 1487
Query 1474 GAGTATTGGATTGGGAAGAT-AAGGCAAGATTTGGAACGTATCAATGAAGAAACTATGAA 1532
|| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1488 GATTATTGGATTGGGAAGATTAAA-CAAGATTTGGAACGTATCAATGAAGAAACTATGAA 1546
Query 1533 TGATTTTGATGGTTGTTGTGATGGTGAAGGAGCTAGTTTGGTTCCGAATTTATCGGCTTT 1592
|||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1547 TGATTTTGATGGTTGTGGTGATGGTGAAGGAGCTAGTTTGGTTCCGACTTTATCAGCTTT 1606
Query 1593 TCAGCTTACTGTTGATCATAGCACTAATGTAGAAGAGGAAGTTGATAGAATTCGAAAGGA 1652
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1607 TCAGCTTACTGTTGATCATAGCACTAATGTAGAAGAGGAAGTTAATAGAATTCGAAAGGA 1666
Query 1653 GCATCCGGATGATGCGAGTGCGGTTTCGAATGAACGTGTTAAAGGTTCTTTGAAGGTCAC 1712
|||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1667 GCATCCTGATGATGCGAGCGCGGTTTCGAATGAACGGGTTAAAGGTTCGTTGAAGGTCAC 1726
Query 1713 TAGAGCTTTCGGCGCAGGTTTCCTCAAGCAGCCTAAATGGAATAACGCGCTTCTTGAGAT 1772
|||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1727 TAGAGCTTTCGGTGCGGGTTTCCTTAAGCAGCCTAAATGGAATAACGCGCTTCTAGAGAT 1786
Query 1773 GTTTCAAATCGATTACAAAGGGACATCTCCTTACATCAACTGCTTGCCATCACTTTACCA 1832
|||||||||||||||||||||||| || || |||||||| || |||||||||||||||||
Sbjct 1787 GTTTCAAATCGATTACAAAGGGACGTCACCATACATCAATTGTTTGCCATCACTTTACCA 1846
Query 1833 TCATAGATTAGGCTCTAAAGACCAGTTTCTGATACTATCCTCGGATGGTCTTTACCAATA 1892
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1847 TCATAGATTAGGCTCGAAAGACCAGTTTCTGATACTATCATCGGATGGTCTTTACCAATA 1906
Query 1893 TTTCACAAACGAAGAAGCGGTTTCAGAGGTCGAACTCTTTATCACATTGCAGCCTGAAGG 1952
|||||||||||||||||||||||||||||| ||||| || ||||| || ||||| |||||
Sbjct 1907 TTTCACAAACGAAGAAGCGGTTTCAGAGGTTGAACTATTCATCACGTTACAGCCGGAAGG 1966
Query 1953 TGACCCGGCTCAGCACTTGGTTCAAGAGCTTCTTTTCCGTGCTGCTAAGAAAGCTGGTAT 2012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 TGACCCGGCTCAGCACTTGGTTCAAGAGCTTCTTTTCCGTGCTGCTAAGAAAGCTGGTAT 2026
Query 2013 GGATTTCCATGAACTACTTGAGATACCGCAAGGGGAACGGAGACGGTACCACGATGATGT 2072
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2027 GGATTTCCATGAACTGCTTGAGATACCACAAGGGGAACGGAGACGGTACCACGATGATGT 2086
Query 2073 TTCCATTGTAGTAATCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATAAACAAAAAC 2132
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 TTCCATTGTAGTGATCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATAAACAAAAAC 2146
Query 2133 CATATATA-TGAACATAGAGAAAACTTGAAGTGTTTCTGAGATGA 2176
| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct 2147 C-TATATAATGAACATAGAGAAAACTTAAAGTGTTTCTGAGATGA 2190
> AT1G07630.1 | Symbols: PLL5 | pol-like 5 | chr1:2349097-2351692
FORWARD LENGTH=2336
Length=2336
Score = 1245 bits (674), Expect = 0.0
Identities = 1551/1957 (79%), Gaps = 130/1957 (7%)
Strand=Plus/Plus
Query 238 GATCCTTTAGACGAAGGTTTAGGTCATTCTTTCTGTTACGTTAGACCCGACCCGACCCGA 297
|||||||||||||||||||||||||| || ||||| ||||| |||| |||||||| | |
Sbjct 183 GATCCTTTAGACGAAGGTTTAGGTCACTCCTTCTGCTACGTCCGACCAGACCCGACTCTA 242
Query 298 GTTTC-G-TCTTCAAAAGTTCACTCAGAAGAAG--A-AACGACG---ACGTTCCGTACAA 349
|| | || |||||||| || ||||| |||| | ||||||| |||||||||||||
Sbjct 243 --ATCAGTTCCTCAAAAGTCCATTCAGAGGAAGACACAACGACGACAACGTTCCGTACAA 300
Query 350 TCTCCGGCGCTTCCGTTAGTGCTAACGCCGCCACACCACTCTCTACTTCTTTATATGATC 409
||||||||||||||||||| || ||| | || || || ||||| |||||| | || ||||
Sbjct 301 TCTCCGGCGCTTCCGTTAGCGCCAACACAGCTACTCCTCTCTCAACTTCTCTCTACGATC 360
Query 410 CTTACGGACATATCGATAGAGCCGCCGCGTTCGAAAGCACGACGTCGTTTTCGTCGATTC 469
| ||||| || ||||| | |||||||| |||||||||||||| || |||||||| || |
Sbjct 361 CCTACGGTCACATCGACCGCGCCGCCGCATTCGAAAGCACGACTTCATTTTCGTCAATCC 420
Query 470 CT-TTGCAACCGATTCCGAGAAGTTCCTGTCCGATTGTACCCGGTTCGGGTCCTTTAGAA 528
|| || |||||||| || | ||| ||| ||||||| || || |||||||| | |||
Sbjct 421 CTCTT-CAACCGATCCCCAAAAGCTCCGGTCCGATCGTTTTAGGCTCGGGTCCGATCGAA 479
Query 529 AGAGGGTTTCTTTCCGGTCCGATTGAAAGAGGTTTCATGTCCGGTCCACTTGA-----T- 582
|||||||| ||||| |||||||| |||||||| |||||||| ||||| ||||| |
Sbjct 480 AGAGGGTTCCTTTCAGGTCCGATCGAAAGAGGATTCATGTCGGGTCCTCTTGATCGGGTC 539
Query 583 -GGTTCTTC-C-GGTCCGATTGCT-GGTAAAAC-C-GGT--TC-TGATCAATTTCAGCGA 633
|||| ||| | |||||| ||| | | |||| | | | || | |||| || || ||
Sbjct 540 GGGTTATTCTCAGGTCCGCTTGATAAGCCAAACTCAGATCATCATCATCAGTTCCAACGT 599
Query 634 AGTTTCTCTCATGGTTTAGCTAATCTCCGGGTCGGGTCGAGAAAAGGATCTTTAGTTCGG 693
|| |||||||||||||||||| | | ||||||||||| |||||| ||||||| ||||||
Sbjct 600 AGCTTCTCTCATGGTTTAGCT--T-TACGGGTCGGGTCAAGAAAACGATCTTTGGTTCGG 656
Query 694 GTTCTCCGTCGTGCAATTTCGAAGACGAT-TACTAGAGGACAAAACTCTATTGTTGCTCC 752
| |||||| | ||||| ||||| ||||| | | ||||| |||||||| || ||||||||
Sbjct 657 ATCCTCCGTAGAGCAATCTCGAAAACGATGT-CAAGAGGGCAAAACTCGATCGTTGCTCC 715
Query 753 GATCAAATCGGTTAAAGAACCCGAT---T-GGGTATTCGGGTCGGATAAAACCCGGATCC 808
||||||||| |||||||| ||||| | ||| ||| |||| | |||| || ||
Sbjct 716 GATCAAATCCGTTAAAGATTCCGATAACTGGGGAATT-AGGTC--AGAAAA----GAGCC 768
Query 809 AGAACCAACACCAGATCGAGAATAACCTCACTGTTAATAGCTTGAATTTTAGTAGTGAAG 868
||| || || | ||||||| ||||| || ||||||||||| ||||| || ||||
Sbjct 769 GGAATTTGCA-CA-A-CGAGAAT---CTCACAGTGAATAGCTTGAACTTTAGCAGCGAAG 822
Query 869 GAAGTTTATTAGACGACGACGTTTCGTTAGAAAGCCAGAATCTTCAATGGGCACAAGGTA 928
|| ||||||||||||||||| | |||| |||||||||||| ||||| || || |
Sbjct 823 TTAG---CTTAGACGACGACGTTTCACTCGAAAACCAGAATCTTCAGTGGGCTCAGGGAA 879
Query 929 AAGCCGGTGAGGATCGTGTACATGTAGTTGTATCGGAAGAACATGGATGGCTCTTCGTTG 988
|||||||||||||||| ||||| || ||||||||||| || || || ||||||||||| |
Sbjct 880 AAGCCGGTGAGGATCGAGTACACGTGGTTGTATCGGAGGAGCACGGGTGGCTCTTCGTCG 939
Query 989 GAATCTACGATGGATTCAACGGTCCAGATGCACCTGACTAT-TTACTCTCTCATTTATAT 1047
|||| ||||| |||||||||||||||||||| || || ||| || ||||||||| | |||
Sbjct 940 GAATATACGACGGATTCAACGGTCCAGATGCGCCGGATTATCTT-CTCTCTCATCTCTAT 998
Query 1048 CCAGCCGTTCATCGTGAGCTTAAAGGATTATTATGGGACGATCCTAAA--ACAG-ATGCA 1104
|| | ||||||||| ||||| |||||||| |||||||||||| | ||| | | || |
Sbjct 999 CCTGTCGTTCATCGAGAGCTCAAAGGATTGTTATGGGACGATTC-AAATGTC-GAAT-CC 1055
Query 1105 AAATCTTC-CGA--T-G-AA-G-CTGATGTAGA-GAATCGTGACTCGAGTTCTGAGAAAA 1156
||||| || || | | || | || | | ||| ||||| || || | || || |||
Sbjct 1056 AAATC-TCAGGATTTAGAAAGGTCTAACGGAGACGAATCTTG-TTC-AAATC--AGGAAA 1110
Query 1157 AGTCA-AAGAATTGGGA-AGAAAGTCAACGACGGTGGAGATGTGA--GTGGGA-TCGAGA 1211
|| | ||| ||| || || || | || || || ||| || ||| | || |||
Sbjct 1111 AG-GATGAGACTTGTGAGCGATGGTGGA-GA-TGT-GA-ATGGGATCGTGAAAGTCAAGA 1165
Query 1212 TCTTGACCGT---TT-ATTGAA-AG---A-TCGGAGTAA-TGGGTCGGATCTAGAT-CCG 1260
|||||||||| || | ||| || | |||||| || ||||||||||| | | ||
Sbjct 1166 TCTTGACCGTCGATTAAAGGAACAGATTAGTCGGAG-AAGTGGGTCGGATC-GGTTAACG 1223
Query 1261 GATCCGAATTCGTCTGATGTATTGA-AAGCTTTGTCACAAGCCT-TGAGGAAGACGGAAG 1318
|| | ||||| || ||||| | | ||| ||||||||| || ||||||| || || |
Sbjct 1224 AAT-C--ATTCG---GAAGTATT-AGAGGCTCTGTCACAAG-CTCTGAGGAAAACAGAGG 1275
Query 1319 AAGCTTATTTGGAGAATGCAGATATGATGCTCGACGAAAATCCTGAACTAGCTTTAATGG 1378
|||| ||||| || | |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1276 AAGCGTATTTAGATACTGCAGATAAGATGCTCGACGAAAATCCTGAACTAGCTTTGATGG 1335
Query 1379 GTTCTTGTGTTCTT-GTTATGTTGATGAAAGGTGAAGATGTTTATTTGATGAATGTTGGT 1437
||||||||||| || || ||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct 1336 GTTCTTGTGTT-TTGGTCATGTTAATGAAAGGTGAAGATATTTATGTGATGAATGTTGGT 1394
Query 1438 GATAGTAGAGCTGTTCTTGGGCAAAAAGCTG-AGAGTGAGTATTGGATT-GGGAAGATAA 1495
|||||||||||||| ||||| || ||| | | | | || || ||| || | ||||| |
Sbjct 1395 GATAGTAGAGCTGTGCTTGGTCAGAAATCAGAACCG-GATTACTGG-TTAGCTAAGATTA 1452
Query 1496 GGCAAGATTTGGAACGTATCAATGAAGAAAC--T-ATGAATGATTTTGATGGTTGTTGTG 1552
| || ||||||||||| || || || ||||| | ||||||||||| || | ||||||
Sbjct 1453 GACAGGATTTGGAACGGATTAACGAGGAAACGATGATGAATGATTTGGA-AG--GTTGTG 1509
Query 1553 ATGGTGAAGGAGCTA-GTTTGGTTCCGAATTTATCGGCTTTTCAGCTTACTGTTGATCAT 1611
| || || | | | ||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1510 AAGGAGATCAATC-ATCTTTAGTCCCGAATTTATCGGCTTTTCAGCTCACTGTTGATCAC 1568
Query 1612 AGCACTAATGTAGAAGAGGAAGTTGATAGAATTC-GAAAGGAGCATCCGGATGATGCGAG 1670
||||| ||| ||||||| |||||||| |||| || |||| |||||||| ||||||| |
Sbjct 1569 AGCACAAATATAGAAGAAGAAGTTGAGAGAA-TCAGAAACGAGCATCCCGATGATGTTAC 1627
Query 1671 TGCGGTTTCGAATGAACGTGTTAAAGGTTCTTTGAAGGTCACTAGAGC-TTTCGGCGCAG 1729
||||| |||||||||| |||||||| || || |||||||| ||||| ||| || || |
Sbjct 1628 CGCGGTAACGAATGAACGGGTTAAAGGCTCCTTAAAGGTCACAAGAGCGTTT-GGTGCTG 1686
Query 1730 GTTTCCTCAAGCAGCCTAAATGGAATAACGCGCTTCTTGAGATGTTTCAAATCGATTACA 1789
||||||| ||||||||||||||||| || || |||||||||||||| ||||| ||||||
Sbjct 1687 GTTTCCTTAAGCAGCCTAAATGGAACAATGCACTTCTTGAGATGTTCCAAATTGATTACG 1746
Query 1790 AAGGGACA-TCTCCTTACATCAACTGCTTGCCATCACTTTACCATCATAGATTAGGCTCT 1848
|||| | ||||| |||||||||||||| || || || ||||| || |||||||| ||
Sbjct 1747 TTGGGA-AGTCTCCATACATCAACTGCTTACCGTCTCTCTACCACCACAGATTAGGGTCC 1805
Query 1849 AAAGACCAGTTTCTGATACTATCCTCGGATGGTCTTTACCAATATTTCACAAACGAAGAA 1908
|| |||| |||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1806 AAGGACCGGTTTCTAATACTATCATCGGATGGTCTCTACCAATACTTCACAAACGAAGAA 1865
Query 1909 GCGGTTTCAGAGGTCGAACTCTTTATCACATTGCAGCCTGAAGGTGACCCGGCTCAGCA- 1967
|| ||||||||||| || ||||| |||||||| || |||||||| || || ||||| ||
Sbjct 1866 GCTGTTTCAGAGGTTGAGCTCTTCATCACATTACAACCTGAAGGGGATCCAGCTCAACAC 1925
Query 1968 CTTGGTTCAAGAGCTTCTT-TTCCGTGCTGCTAAGAAAGCTGGTATGGATTTCCATGAAC 2026
||| || ||||||||| || || | |||||||||||||||||||||||||||||||||
Sbjct 1926 CTT-GTGCAAGAGCTT-TTGTTTAGAGCTGCTAAGAAAGCTGGTATGGATTTCCATGAAT 1983
Query 2027 TACTTGAGATACCGCAAGGGGAACGGAGACGGTACCACGATGATGTTTCCATTGTAGTAA 2086
| || |||||||| ||||| ||||| |||||||| |||||||||||||| || ||||| |
Sbjct 1984 TGCTAGAGATACCACAAGGTGAACGAAGACGGTATCACGATGATGTTTCAATAGTAGTGA 2043
Query 2087 TCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATA 2123
|||||||||||||||||||||||||||||||||||||
Sbjct 2044 TCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATA 2080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111495410445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5