BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481805
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28900.1 | Symbols: OEP16, ATOEP16-L, ATOEP16-1, OEP16-1 | o... 1000 0.0
> AT2G28900.1 | Symbols: OEP16, ATOEP16-L, ATOEP16-1, OEP16-1 |
outer plastid envelope protein 16-1 | chr2:12414114-12415578
REVERSE LENGTH=875
Length=875
Score = 1000 bits (541), Expect = 0.0
Identities = 669/726 (92%), Gaps = 28/726 (4%)
Strand=Plus/Plus
Query 44 aaagaaaaaaatatcccaaaaccaaaaaacaaaggaagaagaaagaagaagaagaagaTG 103
||||| ||||||||||||||||| |||||| | || |||||||||||||||| ||||||
Sbjct 68 AAAGAGAAAAATATCCCAAAACC-AAAAAC--A-GAGGAAGAAAGAAGAAGAA-AAGATG 122
Query 104 CCTTCAAGCACATTCTCCGGTACCGTGAGCACGCCGAAGCTATCGGTGGCGGTTGACATG 163
|||||||||||||||||||| || || |||||||||||||| |||||||| || ||||||
Sbjct 123 CCTTCAAGCACATTCTCCGGGACTGTTAGCACGCCGAAGCTGTCGGTGGCAGTGGACATG 182
Query 164 GGAAACCCTTTTCTCAATCTCACTGTTGATGCCTTCCTCAAGATCGGAGCTGTTGGAATC 223
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 183 GGAAACCCTTTTCTCAATCTCACCGTTGATGCCTTCCTCAAGATCGGAGCTGTTGGAGTC 242
Query 224 ACTAAATCTCTTGCAGAAGACACTTACAAGGCCATCGACAAAGGGAGTCTCTCCAAGAGC 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 ACTAAATCTCTTGCAGAAGACACTTACAAGGCCATCGACAAAGGGAGTCTCTCCAAGAGC 302
Query 284 ACTTTGGAGCATGCGCTTAAGAAGTTGTGTAAAGAAGGTGTTTACTGGGGAGCTGCGGGT 343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 303 ACTTTGGAGCATGCGCTTAAGAAGTTGTGTAAAGAAGGTGTTTACTGGGGAGCTGCTGGT 362
Query 344 GGAGTTTATATTGGAACGGAATACGGAATTGAACGTATCCGTGGCAGCAGAGATTGGAAA 403
||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 363 GGAGTGTACATTGGAACAGAATACGGAATCGAACGTATCCGTGGCAGCAGAGATTGGAAA 422
Query 404 AACGCAATGTTAGCAGGCGCGGCGACAGGAGCAGCGCTCTCTGCGGTTGGTAAGAAAGGC 463
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 423 AACGCAATGTTAGCAGGCGCGGCGACAGGAGCAGTGCTCTCAGCGGTTGGTAAGAAAGGC 482
Query 464 AAAGACACTATCGTGATCGATGCCATTCTTGGTGGCGCGCTTGCAACTGCTTCTCAGTTC 523
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 483 AAAGACACTATTGTGATCGATGCCATTCTTGGTGGCGCGCTTGCAACCGCTTCTCAGTTC 542
Query 524 ATTAACAATCATTATTTCTACTGATTTTCAATCTTCCTATAGGGACCAATTTGGTTCATA 583
||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 543 GTTAACAATCATTATTTCTACTGATTCTCCATCTTCCTTTAGGGACCAATTTGGTTCATA 602
Query 584 TGGTGTGGATTCCTTTGTTTACT----AAA-AA-A--------CAATGTAGTGTTTTTGA 629
||||||||||||||||||||||| ||| || | |||||||||||||||||
Sbjct 603 TGGTGTGGATTCCTTTGTTTACTCTTTAAATAATAATAAAAAACAATGTAGTGTTTTTGA 662
Query 630 A-TGAATACATTTGAGTATTGTTAA--TT---T--GCAATTTAGCTATTTTAAATATGAG 681
| |||||||||| |||||||||| | || | |||||||||||||||| ||||||||
Sbjct 663 AATGAATACATTCGAGTATTGTTGACGTTAAATATGCAATTTAGCTATTTTCAATATGAG 722
Query 682 AAATGCCTCAAAACAATGAAAATTTGTATAGAAAGTAGTAATGATTTTGTGGTTTCTATA 741
||||||||| ||| | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 723 AAATGCCTCGAAATA-TGAAAATTTGTATAGAGAGTAGTAATGATTTTGTGGTTTCTATA 781
Query 742 AAACTC 747
||||||
Sbjct 782 AAACTC 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5