BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481806
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28910.1 | Symbols: CXIP4 | CAX interacting protein 4 | chr2... 1652 0.0
> AT2G28910.1 | Symbols: CXIP4 | CAX interacting protein 4 | chr2:12415780-12417385
REVERSE LENGTH=1345
Length=1345
Score = 1652 bits (894), Expect = 0.0
Identities = 1013/1070 (95%), Gaps = 10/1070 (1%)
Strand=Plus/Plus
Query 48 TCTTCCTAACGATTTCTTCACACGAATCAGGTTTGTGAAAGTTTTTTGTAGGGTGTCGAG 107
|||||||||||||| |||||| ||||||||||||||||| ||||||| |||||| ||||
Sbjct 72 TCTTCCTAACGATTCCTTCACTCGAATCAGGTTTGTGAAGGTTTTTTCTAGGGTTTCGAA 131
Query 108 ACGATGCCGGCGACCGCAGGAAGAGTGCGTATGCCCGCAAACAATCGGGTGCATAGTAGT 167
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 AAGATGCCGGCGACAGCAGGAAGAGTGCGTATGCCCGCAAACAATCGGGTGCATAGTAGT 191
Query 168 GCAGCGCTTCAGACTCACGGGATATGGCAGAGTGCGATTGGTTATGATCCTTATGCACCA 227
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 192 GCAGCGCTTCAGACTCATGGAATATGGCAGAGTGCGATTGGTTATGATCCTTATGCACCA 251
Query 228 ACTAGTAAAGAGGAACCGAAGACGACTCAGCAGAAAACAGAAGATCCTGAGAACTCGTAT 287
||||||||||| || || |||||||| || |||||||| |||||||| |||||||||||
Sbjct 252 ACTAGTAAAGAAGAGCCTAAGACGACACAACAGAAAACCGAAGATCCCGAGAACTCGTAC 311
Query 288 GCGAGTTTTCAAGGTCTTTTGGCTCTTGCTAGAATTACTGGTTCTAATAACGATGAGGCT 347
||||||||||| || ||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 312 GCGAGTTTTCAGGGACTTTTGGCTCTTGCTAGGATTACGGGTTCGAATAACGATGAGGCT 371
Query 348 CGTGGTTCTTGTAAGAAGTGTGGTCGTGTTGGGCATTTGACGTTTCAGTGTAGGAATTTC 407
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 372 CGTGGTTCTTGTAAGAAGTGTGGCCGTGTTGGGCATTTGACGTTTCAGTGTAGGAATTTC 431
Query 408 TTGAGTACTAAGGAGGATAAGGATAAAGATCCTGCTGCGATTGAGGCTGCGGTTTTGTCG 467
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct 432 TTGAGTACTAAGGAGGATAAGGAGAAAGATCCTGGTGCGATTGAAGCTGCGGTTTTGTCG 491
Query 468 GGGTTggagaagattaggagaggagttggtaaaggtga-gttggaggaggagagtagtga 526
||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||||||||
Sbjct 492 GGGTTGGAGAAGATTAGGAGAGGTGTTGGTAAAGGTGAGGTT-GAGGAGGTGAGTAGTGA 550
Query 527 agaggaagaggagagtgagagtTCTGATTCGGATGTTGATTCTGAGATGGAGAGGATTAT 586
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 551 AGAGGAAGAGGAGAGTGAGAGTTCTGATTCTGATGTTGATTCTGAGATGGAGAGGATTAT 610
Query 587 TGCTGAGAGGTTTGGgaagaagaaaggtgggggtagtagtgttaagaagacgagttcggt 646
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 611 TGCTGAGAGGTTTGGGAAGAAGAAAGGT--GGG-AGTAGTGTTAAGAAGACGAGTTCGGT 667
Query 647 gaggaagaagaagaagaagCGTGTTTCTGATGAGTCTGATTCTGATTCGGATTCTGGAGA 706
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TA-G--GAAGAAGAAGAAGCGTGTTTCTGATGAGTCTGATTCTGATTCGGATTCTGGAGA 724
Query 707 TAGGAAGAGAAGGCGGAGGTCGAAGAAGAAGCGGAGTTCGCATAAgaggaggagtacgag 766
||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct 725 TAGGAAGAGAAGGCGGAGGTCGATGAAGAAGCGGAGTTCGCATAAGAGAAGGAGTTTGAG 784
Query 767 tgagtctgaggatgaggatgagggaaggagtaagcgaagaaaggagaggagaggaagaaa 826
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 785 TGAGTCTGAGGATGAGGAAGAGGGAAGGAGTAAGAGAAGAAAGGAGAGGAGAGGAAGAAA 844
Query 827 gagagatgaagatgattctgatgagtctgaggatgaagatgaCAGACGTGTgaagagaaa 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GAGAGATGAAGATGATTCTGATGAGTCTGAGGATGAAGATGACAGACGTGTGAAGAGAAA 904
Query 887 gagtagaaaggagaagaggagaaggagaagCCGTCGTAATCATTCTGATGATTCTGATTC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GAGTAGAAAGGAGAAGAGGAGAAGGAGAAGCCGTCGTAATCATTCTGATGATTCTGATTC 964
Query 947 AGAATCCTCTGAAGATGATAGAAGGCAGAAGCGAAGGAACAAAGTCGCAGCTTCTTCTGA 1006
||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 965 AGAGTCTTCTGAAGATGATAGAAGACAGAAGCGGAGGAACAAAGTCGCAGCTTCTTCTGA 1024
Query 1007 CTCGGAAGCCAATGTTTCAGGGGATGATGTTTCACGCGTTGGACGTGGTTCTTCTAAACG 1066
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1025 CTCAGAAGCAAATGTTTCAGGCGATGATGTTTCACGCGTTGGACGTGGTTCTTCTAAGCG 1084
Query 1067 GTAC-GAGAAGAAGAGCAGGAAACGTCATCACAGGAAAGAGTGAAAGTAG 1115
|| | |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1085 GT-CTGAGAAGAAGAGCAGGAAACGTCATCACAGGAAAGAGCGAGAGTAG 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5