BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481807

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28920.1 | Symbols:  | RING/U-box superfamily protein | chr2...   665    0.0  


> AT2G28920.1 | Symbols:  | RING/U-box superfamily protein | chr2:12418017-12418454 
FORWARD LENGTH=438
Length=438

 Score =  665 bits (360),  Expect = 0.0
 Identities = 412/438 (94%), Gaps = 0/438 (0%)
 Strand=Plus/Plus

Query  1    ATGGAATCAAGTTGTTGTGGAGATTACATGACGGCGGCGTCGCCGGAGATGGCGACGGTG  60
            |||| ||||||||||||||| |||||| || |||||||||| ||||||||| |||| |||
Sbjct  1    ATGGCATCAAGTTGTTGTGGGGATTACGTGGCGGCGGCGTCACCGGAGATGTCGACAGTG  60

Query  61   ACGGGATCTGAATCAATAGCGTTGAGACTTCTTTGTGTAGTCTTTATCATCCTCTTCTAC  120
            | |||||| |||||||| | ||||||||||||||| || |||||||| ||||||||||||
Sbjct  61   ATGGGATCAGAATCAATCGTGTTGAGACTTCTTTGCGTCGTCTTTATTATCCTCTTCTAC  120

Query  121  GGATCGATTATTCTCCTCTGTTTCGTAATGTACCCGAAGCTACCGAAGGAAGAAATCGGC  180
            || || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  121  GGTTCTATTATTCTCCTCTGTTTCGTAATGTACCCGAAGCTACCAAAGGAAGAAATCGGC  180

Query  181  GACGAAGAAGCCGGTGAGCCGTTACCTCCCGCCGTGAGACTCACGAAATGCGGCGGTGGA  240
            || || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  181  GATGAGGAAGCCGGAGAGCCATTACCTCCCGCCGTGAGACTCACGAAATGCGGCGGTGGA  240

Query  241  GACGGCGGTGACGGTGACGGAGTTAGAGCTGACGTGTGTGTGATTTGTTTGGAGGATTTT  300
            |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  241  GACGGCGGAGACGGTGACGGAGTTAAAGCTGACGTGTGTGTGATTTGTTTGGAGGATTTT  300

Query  301  GAAGTAAACGACGTCGTTAGAGTTCTTGTGAGATGCAAGCACGTGTTTCACGTGGATTGT  360
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AAAGTAAACGACGTCGTTAGAGTTCTTGTGAGATGCAAGCACGTGTTTCACGTGGATTGT  360

Query  361  ATAGATTCTTGGTGTTTTTATAAGCTGACGTGTCCGATTTGTAGAGCTCCGTTTCAGTGG  420
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  361  ATAGATTCGTGGTGTTTTTATAAGCTGACGTGTCCGATTTGTAGAGCTCCGTTTCAATGG  420

Query  421  TTTGGTGGTGATTGGTAG  438
            ||||||||||||||||||
Sbjct  421  TTTGGTGGTGATTGGTAG  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5