BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481810
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28930.1 | Symbols: APK1B, PK1B | protein kinase 1B | chr2:1... 2433 0.0
AT1G07570.3 | Symbols: APK1A | Protein kinase superfamily prote... 1002 0.0
AT2G05940.1 | Symbols: | Protein kinase superfamily protein | ... 119 9e-26
> AT2G28930.1 | Symbols: APK1B, PK1B | protein kinase 1B | chr2:12424775-12426674
FORWARD LENGTH=1563
Length=1563
Score = 2433 bits (1317), Expect = 0.0
Identities = 1491/1573 (95%), Gaps = 19/1573 (1%)
Strand=Plus/Plus
Query 1 GGAGGATAAAATGACTTAACTTAAAAGTTAGGCTTAATGTATTGACAAATCTGTCAAAGG 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 GGAGGATAAAATGACTTAACTTAAAAGTTAGGCTTAATGTTTTGACAAATCTGTCAAAGG 60
Query 61 -TTTCATAATAAATTGATTAATTATCTAAAACTTTGTCtttttttttttGTTGTTGTTTT 119
||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||
Sbjct 61 TTTTCATAATAAATTGATTAATTATCTAAAGCTTTGTCTTTTTTTTGGTGTT-TGGTTTA 119
Query 120 GTT-AATACATAATCAAAA-C-AAATCAGAGTTTTACTTTTGTCTGATCTCTAAAAAC-- 174
|| | | | | ||||||| | ||| || | ||||||||||||||||||||||||||
Sbjct 120 ATTCACTCCTTCATCAAAATCAAAAACA-A-ATTTACTTTTGTCTGATCTCTAAAAACAA 177
Query 175 AAAACATGAAAATTGGATTTGTC-ACAAAAGTGAAATCTAACGtttttttGTATGTTAAC 233
||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||| |||
Sbjct 178 AAAACATGAAAATGGGATTTGTCGA-AAAAGTGAAGTCTAACGTTTTTTTGTATGCAAAC 236
Query 234 TATGTTTTTGGTTGTTGTATAGGTGCAAGTCCGAAGTATACGAGTTCAGAGGCTAATGAT 293
||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 237 TATGTGTTTGGTTGTTGTATAGGTGCAAGTCCGAAGTATATGAGCTCAGAGGCTAATGAT 296
Query 294 TCACAAAGTATGGGAAGCAAAAGCTCTTCTGTGTCAATCAGAACAAACCCAAGAACTGAA 353
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCAC------TGGGAAGTAAAAGCTCTTCTGTGTCAATCAGAACAAACCCAAGAACTGAA 350
Query 354 GGAGAGATCTTGCAATCTCCTAACCTCAAAAGTTTCACTTTTGCTGAGCTTAAAGCAGCA 413
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 351 GGAGAGATCTTGCAATCTCCTAATCTCAAAAGTTTCACTTTTGCTGAGCTTAAAGCAGCA 410
Query 414 ACTAGGAATTTCAGACCAGATAGTGTTCTTGGTGAAGGTGGATTTGGTTCTGTTTTCAAA 473
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 411 ACTAGGAATTTTAGACCAGATAGTGTTCTTGGTGAAGGTGGTTTTGGTTCTGTTTTCAAA 470
Query 474 GGTTGGATTGATGAACAGACTCTTACTGCTTCTAAACCGGGAACCGGTGTGGTTATTGCT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GGTTGGATTGATGAACAGACTCTTACTGCTTCTAAACCGGGAACCGGTGTGGTTATTGCT 530
Query 534 GTTAAAAAGCTTAACCAAGATGGTTGGCAAGGTCACCAAGAATGGCTGGCGGAAGTGAAT 593
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 531 GTCAAAAAACTTAACCAAGATGGTTGGCAAGGTCACCAGGAATGGCTGGCGGAAGTGAAT 590
Query 594 TACTTGGGGCAGTTTTCACATCCTAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGAT 653
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TACTTGGGGCAGTTTTCGCATCCTAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGAT 650
Query 654 GAGCATCGTCTTCTTGTGTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCATTTGTTC 713
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GAGCATCGTCTTCTTGTTTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCATTTGTTC 710
Query 714 AGAAGAGGTTCTTATTTTCAACCGTTATCTTGGACTCTCCGGTTGAAAGTTGCTCTTGGT 773
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 711 AGAAGAGGTTCTTATTTTCAACCTTTATCTTGGACTCTCCGGTTGAAAGTTGCTCTTGGT 770
Query 774 GCTGCCAAAGGTCTTGCTTTTCTTCATAACGCTGAGACTAGTGTCATATACCGTGATTTC 833
|| || ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 771 GCAGCGAAAGGTCTTGCGTTTCTTCATAACGCCGAGACTAGTGTCATATACCGCGATTTC 830
Query 834 AAAACGTCGAATATACTTCTTGATTCGGAGTACAATGCTACGCTTTCTGATTTCGGGCTG 893
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 831 AAAACGTCGAATATACTGCTTGATTCGGAGTACAATGCTAAGCTTTCTGATTTCGGGCTA 890
Query 894 GCTAAAGATGGTCCAACGGGCGATAAAAGCCATGTCTCTACACGGATCATGGGTACTTAC 953
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 891 GCTAAAGACGGTCCAACGGGTGATAAAAGCCATGTCTCTACGCGGATCATGGGTACTTAC 950
Query 954 GGATATGCAGCTCCTGAATATCTTGCAACTGGTCATTTAACAACCAAAAGTGATGTCTAT 1013
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GGATACGCAGCTCCTGAATATCTTGCAACTGGTCATTTAACAACCAAAAGTGATGTCTAT 1010
Query 1014 AGCTACGGTGTCGTGCTTTTGGAGGTGTTGTCTGGACGGAGAGCTGTGGACAAGAACCGT 1073
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1011 AGCTACGGTGTTGTGCTTTTGGAGGTGTTGTCTGGACGGAGAGCTGTAGACAAGAACCGT 1070
Query 1074 CCACCAGGAGAGCAAAAGCTGGTGGAATGGGCAAGACCGTTACTTGCAAACAAAAGGAAG 1133
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1071 CCACCAGGAGAGCAAAAGCTAGTGGAATGGGCAAGACCGTTACTTGCTAACAAAAGGAAG 1130
Query 1134 TTATTCCGAGTTATCGATAACCGTCTACAAGATCAATACTCAATGGAAGAAGCTTGTAAA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TTATTCCGAGTTATCGATAACCGTCTACAAGATCAATACTCAATGGAAGAAGCTTGTAAA 1190
Query 1194 GTAGCTACTCTGGCGCTGAGATGCCTCACATTCGAGATAAAGCTGAGACCGAACATGAAT 1253
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1191 GTAGCTACTCTTGCGCTGAGATGCCTCACATTCGAGATAAAGCTGAGACCAAACATGAAC 1250
Query 1254 GAGGTTGTTTCTCACCTCGAACACATCCAAACTTTGAATGAAGCAGGAGGAAGAAATATC 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GAGGTTGTTTCTCACCTCGAACACATCCAAACTTTGAATGAAGCAGGAGGAAGAAATATT 1310
Query 1314 GATAAGGTCGAGAGAAGAATGCGTAGGAGAAGCGATAGTGTTGCTATCAACCAAAAACCA 1373
|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GATATGGTCCAGAGGAGAATGCGTAGGAGAAGCGATAGTGTTGCTATCAACCAAAAACCA 1370
Query 1374 AATGCAGGTTTTGCTCGGCAAACAGCTGTAGGCGTCATAGCTACTGCTTATCCACGCCCG 1433
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1371 AATGCAGGTTTTGCTCGACAAACTGCTGTAGGCGTCATAGCTACTGCTTATCCACGCCCG 1430
Query 1434 TCTGATTCGCCTCTGTTTGTCTAAGTAAGAAACGATGAATGTTCTGTTTAGTTCGGATGT 1493
|||||||||||||||||||| | |||| ||||||||||||||||| ||||||||||||||
Sbjct 1431 TCTGATTCGCCTCTGTTTGTTTGAGTACGAAACGATGAATGTTCTCTTTAGTTCGGATGT 1490
Query 1494 ACAGTTTTGTTTCTGCTTATGTACCGAAAGGATTC--AGTTCATGGCTCAATTACATGAC 1551
|||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||
Sbjct 1491 ACAGTTTTGTTTCTGCTTGTGTACCGAAAGGATTCTCAGTTCATGGCTCGTTTACACGAC 1550
Query 1552 TCAGAGATTTGAC 1564
|||||||||||||
Sbjct 1551 TCAGAGATTTGAC 1563
> AT1G07570.3 | Symbols: APK1A | Protein kinase superfamily protein
| chr1:2331334-2333738 REVERSE LENGTH=1459
Length=1459
Score = 1002 bits (542), Expect = 0.0
Identities = 966/1168 (83%), Gaps = 40/1168 (3%)
Strand=Plus/Plus
Query 304 TGGGAAGCAAAAGC-TCTTCTGTGTCAATCAGAACAAACCCAAGAACTGAAGGAGAGATC 362
|||| ||| || || || |||||||| | ||| ||| ||| ||||||| || ||||||
Sbjct 275 TGGG-AGC-AAGGCTTCGTCTGTGTCTGTAAGACCAAGCCCTCGAACTGAGGGTGAGATC 332
Query 363 TTGCAATCTCCTAACCTCAAAAGTTTCA-CTTTTGCTGAGCTTAAAGCAGCAACTAGGAA 421
|| || ||||| || ||||| ||||| | | ||||||||||||||| ||||||| |||||
Sbjct 333 TTACAGTCTCCAAATCTCAAGAGTTTTAGC-TTTGCTGAGCTTAAATCAGCAACCAGGAA 391
Query 422 TTTCAGACCAGATAGTGTTCTTGGTGAAGGTGGATTTGGTTCTGTTTTCAAAGGTTGGAT 481
||| |||||||| ||||| ||||||||||||||||| |||| |||||||||||| |||||
Sbjct 392 TTTTAGACCAGACAGTGTGCTTGGTGAAGGTGGATTCGGTTGTGTTTTCAAAGGATGGAT 451
Query 482 TGATGA-ACAGACTCTTACTGCTTCTAA-ACCGGGAACCGGTGTGGTTATTGCTGTTAAA 539
|||||| | || |||| ||||| || || ||| || || ||| |||||||||| || |||
Sbjct 452 TGATGAGA-AGTCTCTCACTGCCTC-AAGACCAGGCACGGGTTTGGTTATTGCCGTCAAA 509
Query 540 AAGCTTAACCAAGATGGTTGGCAAGGTCACCAAGAATGGCTGGCGGAAGTGAATTAC-TT 598
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||| ||
Sbjct 510 AAGCTTAACCAAGATGGTTGGCAAGGTCACCAGGAGTGGCTGGCTGAAGTGAATTACCTT 569
Query 599 GGGGCAGTTTTCACATCC-TAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGATGAGC 657
|| |||||||| || || | | |||||||| ||||||||||||||| ||||||||||||
Sbjct 570 GGT-CAGTTTTCTCA-CCGTCACCTTGTGAAGCTGATTGGTTATTGCCTAGAGGATGAGC 627
Query 658 ATCGTCTTCTTGTGTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCAT-TTGTTCAGA 716
| ||||||||||| || |||||||||||||| || ||||| ||||||||| || |||||
Sbjct 628 ACCGTCTTCTTGTTTACGAGTTCATGCCTCGGGGTAGCTTGGAGAATCATCTT-TTCAGG 686
Query 717 AGAGGTTCT-TATTTTCAACCGTTATCTTGGACTCTCCGGTTGAAAGTTGCTCTTGGTGC 775
||||||| | || || |||||||||||||||| || |||||||||||||||||||||||
Sbjct 687 AGAGGTT-TGTACTTCCAACCGTTATCTTGGAAACTTCGGTTGAAAGTTGCTCTTGGTGC 745
Query 776 TGCCAAAGGT-CTTGCTTTTCTTCATAACGCTGAGACTAGTGTCATATACCGTGATTTCA 834
||| ||||| |||||||||||||| | | ||||| || || |||||||| |||||||
Sbjct 746 TGC-AAAGGGACTTGCTTTTCTTCACAGTTCCGAGACAAGAGTGATATACCGAGATTTCA 804
Query 835 AAACGTCGAATATACTTCTTGATTCGGAGTACAATGCTACGCTTTCTGATTTCGGGCTGG 894
| || || ||||| |||||||| ||||||||||| || | |||||||||||| ||| |||
Sbjct 805 AGACTTCTAATATCCTTCTTGACTCGGAGTACAACGCAAAGCTTTCTGATTTTGGGTTGG 864
Query 895 CTAAAGATGGTCCAACGGGCGATAAAAGCCATGTCTCTACACG-GATCATGGGTACTTAC 953
|||| ||||| |||| || |||||||| |||||||||||||| | |||||||||| ||
Sbjct 865 CTAAGGATGGGCCAATAGGTGATAAAAGTCATGTCTCTACACGAG-TCATGGGTACACAC 923
Query 954 GGATATGCAGCTCCTGAATATCTTGCAACTGGTCATTTAACAACCAAA-AGTGATGTCTA 1012
|||||||||||||||||||| |||||||| |||||| ||||||| ||| |||||||||||
Sbjct 924 GGATATGCAGCTCCTGAATACCTTGCAACCGGTCATCTAACAAC-AAAGAGTGATGTCTA 982
Query 1013 TAGCTACGGTGTCGTGCTTTTGGAGGTGTTGTCTGGACGGAGAGCTGTGGACAAGAACCG 1072
||||| ||| || || ||| ||||| |||||||||| || |||| ||||||||||||||
Sbjct 983 TAGCTTCGGGGTTGTCCTTCTGGAGCTGTTGTCTGGTCGTCGAGCAGTGGACAAGAACCG 1042
Query 1073 TCCACCAGGAGAGCAA-AAGCTGGTGGAATGGGC-AAGACCGTTACTT-GCAAACAAAAG 1129
||| | |||||| | || || ||||| ||||| || ||| | || | | |||||||||
Sbjct 1043 CCCATCTGGAGAG-AGGAACCTTGTGGAGTGGGCTAA-ACCAT-ACCTCGTAAACAAAAG 1099
Query 1130 GAAGTTATTCCGAGTTATCGATAACCGTCTACAAGATCAATACTCAATGGAAGAAGCTTG 1189
||| |||||||||| || ||||| ||||| || || || ||||| ||||||||||| ||
Sbjct 1100 AAAGATATTCCGAGTCATTGATAATCGTCTTCAGGACCAGTACTCTATGGAAGAAGCATG 1159
Query 1190 TAAAGTAGCTACTCTGGCGCTGAGATGCCTCAC-ATTCGAGATAAAGCTGAGACCGAACA 1248
|||||| ||||||||| | |||||||| ||||| | ||||| ||||||||||| ||||
Sbjct 1160 TAAAGTGGCTACTCTGTCTCTGAGATGTCTCACCACA-GAGATTAAGCTGAGACCAAACA 1218
Query 1249 TGAATGAGGTTGTTTCTCACCTCGAACACATCCAAACTTTGAATGAAGC-AGGAGGAAGA 1307
||| ||||||||||| |||||||||||||| || |||| |||| || | |||| ||
Sbjct 1219 TGAGCGAGGTTGTTTCGCACCTCGAACACATTCAGTCTTTAAATGCTGCTAT-AGGAGGA 1277
Query 1308 AATATCGATAAGGTC-GAGAGAAGAATGCGTAGGAGAAGCGATAGTGTTGCTATCAACCA 1366
||||| ||||| | || |||||||||||||||||||| || ||||||| | || | |
Sbjct 1278 AATATGGATAAAA-CAGATAGAAGAATGCGTAGGAGAAGTGACAGTGTTG-T--CAGCAA 1333
Query 1367 AAAACCAAATGCAGGTTTTGCTCGGCAAACAGCTGTAGGC-GTCATAGCTACTGCTTATC 1425
|||| ||||||||||||||||| || || ||||| ||| || | || | ||||||||
Sbjct 1334 AAAAGTGAATGCAGGTTTTGCTCGACAGACTGCTGTTGGCAGT-ACAGTTGTTGCTTATC 1392
Query 1426 CACGCCCGTCTGATTCGCCTCTGTTTGT 1453
| ||||| || | ||||| |||| |||
Sbjct 1393 CTCGCCCATCAGCCTCGCCACTGTATGT 1420
> AT2G05940.1 | Symbols: | Protein kinase superfamily protein
| chr2:2287238-2289307 REVERSE LENGTH=1702
Length=1702
Score = 119 bits (64), Expect = 9e-26
Identities = 432/602 (72%), Gaps = 56/602 (9%)
Strand=Plus/Plus
Query 529 TTGCTGTTAAAAAGCTTAACCAAGATGGT-TGGCAAGGTCACCAAGAATGGCTGGCGGAA 587
||||||||||| |||| | | || ||| | |||||||||| ||||||||| |||||
Sbjct 393 TTGCTGTTAAATTGCTTGATCTTGAAGGTCT-TCAAGGTCACCGTGAATGGCTGACGGAA 451
Query 588 GTGAAT-TACTTGGGGCAGTTTTCA-CATC-CTAATCTT-GTGAAACTGATTGGTTATTG 643
|| || | ||||| || || | || | ||| || |||||| |||||||||||||
Sbjct 452 GT-TATGTTTTTGGGACA-ATTGAAGCA-CAAAAAT-TTGGTGAAATTGATTGGTTATTG 507
Query 644 CTT-AGAGGATGAGCATCG-TCTTCTTGTGTATGAGTTCATGCCTCGTGGAAGCTTAGAG 701
|| ||||| || ||| | | |||||| ||||||||||||||||||||||||||||||
Sbjct 508 -TTGTGAGGAAGAACATAGAAC-TCTTGTTTATGAGTTCATGCCTCGTGGAAGCTTAGAG 565
Query 702 AATCAT-TTGTTCAGAAGAGGTTCTTATTTTCAACCGTTATCT-TGGACTCTCCG-GT-T 757
||||| || ||||||||| | || | | | | | || ||| || | | |
Sbjct 566 AATCAACTT-TTCAGAAGA--TACTC-TGC-CT-C-GCT-TCCATGG--TCAACAAGAAT 615
Query 758 GAAAGTT-GCTCTTGGTGCTGCCAA-AGGTCTTGCT-TTTCTTCAT-AACGCTGAGACTA 813
||| | | |||| ||| ||||| || ||| ||| | ||||| || || ||||| | |
Sbjct 616 GAA-GATCGCTCATGGAGCTGC-AACAGGACTT-CAATTTCTACACGAA-GCTGAAAATC 671
Query 814 GTGTCATATACCGTGATTTCAAAACGTCGAATATACTTCTT-GATTCGGAGTACAATGCT 872
||| || || || ||||||||| | || ||||| ||| || ||||| || |||| ||
Sbjct 672 CTGTTATCTATCGGGATTTCAAAGCCTCCAATAT-CTTGTTAGATTCCGATTACACGGCG 730
Query 873 ACGCTTTCTGATTTCGGGCTGGCTAAAGATGGTCCA-ACGGGCGATAAAAGC-CATGTCT 930
| || ||||| |||||| | || ||||| || ||| | || || | | | ||||| |
Sbjct 731 AAACTCTCTGACTTCGGGTTAGCCAAAGACGGACCAGAAGGA-GACGACA-CTCATGTGT 788
Query 931 CTACACG-GATCATGGGTACTTACGGATATGCAGCTCCTGAATA--TCTTGCAACTGGTC 987
| || || | | ||||| || | || || |||||||||||||| || || | | ||||
Sbjct 789 CAACTCGAG-TGATGGGCACACAAGGCTACGCAGCTCCTGAATACATCATG-ACC-GGTC 845
Query 988 ATTTAACAACCAA-AAGTGATGTCTATAGCTACGGTGTCGTGCTTT-TGGAGGTGTTGTC 1045
|||||||| | || |||||| || || |||| || || ||| || | ||| | ||| |
Sbjct 846 ATTTAACAGC-AAGAAGTGACGTATACAGCTTTGGAGTTGTG-TTGCTAGAGCTTTTGAC 903
Query 1046 TGGACGGAGAGCTGTGGACAAGAACCG-TCCACC-AGGAGAGCAAAAGCTGGTGGAATGG 1103
||||||||| | || ||||| || | || | | ||| || ||||| || ||||| |||
Sbjct 904 CGGACGGAGATCAGTAGACAAAAAGAGATC-ATCGAGG-GAACAAAACCTTGTGGACTGG 961
Query 1104 GC 1105
||
Sbjct 962 GC 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208438210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5