BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481811
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28940.2 | Symbols: | Protein kinase superfamily protein | ... 2279 0.0
> AT2G28940.2 | Symbols: | Protein kinase superfamily protein
| chr2:12426710-12428685 REVERSE LENGTH=1539
Length=1539
Score = 2279 bits (1234), Expect = 0.0
Identities = 1391/1466 (95%), Gaps = 14/1466 (1%)
Strand=Plus/Plus
Query 1 GAAGATCATGAAGTGTTTTCACTTCACCAATGGCGACAAGAG---AGGAACATCAATCGA 57
||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 1 GAAGAACATGAAGTGTTTTCACTTCACCAATGGCGACAAGAGAACAACAACAACAATCGA 60
Query 58 CGAaggaggaggaggaggagACAGTGTTATTTCAAGAGCTTCAAGACTCTCATGGGCTCG 117
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 AGAAGGAGTAGGAGGAGGAGACAGTGTTGTTTCAAGAGCTTCAAGACTCTCATGGGCTCG 120
Query 118 GTCTCTAAGCGTAGCATCATCCACCACTTCAGACCCAACTCGGAGGTCTGAGTTTGACTC 177
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 121 TTCTCTAAGCGTAGCATCATCCACCACTTCAGACCCAACTCGCCGGTCCGAGTTTGACTC 180
Query 178 AGACTGGAGTTTCTCACCGGAACGACTTAGTTTTCCCAAACCATTAAGTCAACGTTGGAT 237
|||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 181 AGACTGGAGTTTCTCACCGGAAAGACTTACTTTTCCCAAGCCATTAAGTCAACGTTGGAT 240
Query 238 CGGTGGACTTGTTCCTGAGAATGATCTAAAGGTGTTTACTTTCAAAGAGCTGAAGTTGGC 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 241 CGGTGGACTTGTTCCTGAGAATGATCTAAAGGTGTTTACTTTCAAAGAGCTGAAAATAGC 300
Query 298 TACTAAAGGGTTT-AGTAGAGGTCTTTTGATTGGTGAAGGAGGGTTTGGTTGCGTTTATA 356
||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TACTAAA-GGTTTCAATAGAGGTCTTTTGATTGGCGAAGGAGGGTTTGGTTGCGTTTATA 359
Query 357 GAGGTGTTGTTGATGTTTCAGACTCAAATGGTTTTGATTCGAAGATTAATGTTGCTGTTA 416
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 GAGGTGTTGTTGATGTTTCAGACTCTAATGGTTTTGATTCGAAGATTAATGTTGCTGTTA 419
Query 417 AACAGCTTAATCGTCAAGGTTTACAGGGGCATAAAGAATGGATCAATGAGGTGAATTTTC 476
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 AACAGCTTAATCGTCAAGGTTTACAGGGGCATAAGGAATGGATCAATGAGGTGAATTTTC 479
Query 477 TAGGAGTAGTGAATCATCCAAATCTTGTGAAGTTAGTTGGGTATTGTGCTGATGATGATG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TAGGAGTAGTGAATCATCCAAATCTTGTGAAGTTAGTTGGGTATTGTGCTGATGATGATG 539
Query 537 AAAGAGGGATGCAAAGGCTTCTTGTTTACGAACTTATGTGTAATAAAAGCTTGGAGGATC 596
|||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||
Sbjct 540 AAAGAGGGATGCAAAGGCTTCTAGTCTATGAACTTATGTGTAATAAGAGCTTGGAGGATC 599
Query 597 ATCTCGTAGGCAGAGTTGTGTCTGTATCGCTTCCGTGGATGACGAGGTTGAAGATTGCGC 656
||||||||||| |||||||||| ||||| || |||||||||| |||||||||||||||||
Sbjct 600 ATCTCGTAGGCCGAGTTGTGTCGGTATCTCTACCGTGGATGATGAGGTTGAAGATTGCGC 659
Query 657 AAGATGCTGCTCAAGGCTTGGCTTATCTTCATGAAGAAATGGATTTTCAGTTGATATTTC 716
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAGATGCTGCTCAAGGCTTAGCTTATCTTCATGAAGAAATGGATTTTCAGTTGATATTTC 719
Query 717 GAGATTTCAAGTCTTCAAACATCTTGCTTGACGAGAGATTCGGTGCAAAGCTTTCGGATT 776
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 720 GAGATTTCAAGTCTTCAAACATCTTGCTTGATGAGAGATTCGGTGCAAAGCTCTCGGATT 779
Query 777 TTGGATTAGCTAGGCAAGGACCTCCTGAAGGACTTGGTCATGTCTCAACTTCAGTTGTAG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGGATTAGCTAGGCAAGGACCTCCTGAAGGACTTGGTCATGTCTCAACTTCAGTTGTAG 839
Query 837 GTACGGTTGGTTACGCAGCTCCTGAGTATGTACAAACCGGGAAATTGACGGCAAAGAGCG 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 GTACGGTTGGTTACGCAGCTCCTGAGTATGTACAAACCGGGAAATTGACGGCAAAGAGTG 899
Query 897 ATGTTTGGAGCTTTGGGGTAGTGTTGTATGAACTGATCACTGGAAGACGAGCAGTGGATA 956
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 900 ATGTATGGAGCTTTGGGGTAGTGTTGTATGAACTGATCACGGGAAGACGAGCAGTGGATA 959
Query 957 GAAATCGACCTCGGGGGGAACAGAAGCTTTTAGAATGGGTGAAACCTTATGTATCAGACT 1016
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 960 GAAATCGACCTCGAGGTGAACAGAAGCTTTTAGAATGGGTGAAGCCTTATGTATCAGACT 1019
Query 1017 CGAAGAAATTCCATGCC-ATTGTCGATCCGCGGCTCGAAGGCCAGTACTACTGTATGAAG 1075
||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1020 CGAAGAAGTTCCAT-CTGATTGTCGATCCACGGCTCGAAGGCCAGTACTACTGTATGAAG 1078
Query 1076 TCTGTTCAGAGAGTAGCTGCTTTGGCAAACAAATGTCTAATGAAGCAACCGAAATCTCGG 1135
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCTGTTCAAAGAGTAGCTGCTTTAGCAAACAAATGTCTAATGAAGCAACCGAAATCTCGG 1138
Query 1136 CCTAGAATGAGCGAAGTTGTTTCACTTCTTGGACGCATCATCGACGAAGAAGCGGAAGAT 1195
|||| |||||||||||| || ||||| ||||||||||||||||| |||||||||||| |
Sbjct 1139 CCTAAAATGAGCGAAGTCGTATCACTACTTGGACGCATCATCGATGAAGAAGCGGAAAAC 1198
Query 1196 GCTCCTCCGCCAGTTACTGATGAAACAGAAGAGATCATCAAAGCTGAGATAAATGGAGAG 1255
| ||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 1199 GTTCCTCCGCCAGTTGCTGATGAAACAGAAGAGATAATCAAAGCTGAGCTCAATGGAGAG 1258
Query 1256 AGTGAGCCTGAGCTAAAGAAGCAAGGGAGTAGTTATCGTAAGAAGGTTCTTGATCTTAGG 1315
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1259 AGTGAGCCTGAGCTAAAGAAGCAAGGTAGTAGTTATCGTAAGAAGGTTCTTGATCTTAGG 1318
Query 1316 GATAAGATGAACTTAAACAAGTCGCTTTCGAAGCTAGACTGGCGAAACTGGACACCAGGA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GATAAGATGAACTTAAACAAGTCGCTTTCGAAGCTAGACTGGCGAAACTGGACACCAGGA 1378
Query 1376 CTGGTCAGAACATGGTAG-A-AA-TAGTGTCCTCACTGTATATAAACTTCTTAGCCACCA 1432
|||||||||||||||||| | || ||||||| ||||||||||||||||||||| | ||
Sbjct 1379 CTGGTCAGAACATGGTAGTAGAAATAGTGTCTTCACTGTATATAAACTTCTTA---AGCA 1435
Query 1433 TTTGCTTGTATATATGTTTGGAAAGC 1458
||||||| | |||||||||| |||||
Sbjct 1436 TTTGCTTATGTATATGTTTG-AAAGC 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73493597880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5