BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481823
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29050.1 | Symbols: ATRBL1, RBL1 | RHOMBOID-like 1 | chr2:12... 2259 0.0
> AT2G29050.1 | Symbols: ATRBL1, RBL1 | RHOMBOID-like 1 | chr2:12478146-12480372
FORWARD LENGTH=1520
Length=1520
Score = 2259 bits (1223), Expect = 0.0
Identities = 1396/1473 (95%), Gaps = 38/1473 (3%)
Strand=Plus/Plus
Query 25 ACAACAATGTCATAAAAAGTTTGATCCTTTCTCTTTAGATTTGGCTTCGA-AAATGGCTC 83
|||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 47 ACAACAATGTCACAAAAAGTCTGATCCTTTCTCTTTAGATTTGGCTTCGAGAAATGGCTC 106
Query 84 GCGATCGGCGGGAAGGTCTGGAGATTAAGGTGGTGAATCCA-C--CGGCGGCGACAAACA 140
||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 107 GCGATCGGCGGGAAGGTCTGGAGATCAAGGTGGTGAATCCACCGGCGGCGGCGACAAACA 166
Query 141 ATGTGTCTGTAGAAACGTCTCCGGCGACGGCGACGAGGAGACGGAG---ACAACAACGAG 197
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 167 ATGTGGCTGTAGAAACGTCTCCGGCGACGGCGACGAGGAGACGGAGACAACAACAACGAG 226
Query 198 CTTCGTTCGCTGAGTTTAGACCGTTTAAGCTTTGGTTTCCATGGCTTGTTCCAGCTATCG 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 CTTCGTTCGCTGAGTTTAGACCGTTTAAGCTTTGGTTTCCATGGCTTGTTCCAGCTATCG 286
Query 258 TGGTGGCTAACATTGCCCTTTTCGCCATTTCGATGTTTATTAACAATTGTCCTAAGAACT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TGGTGGCTAACATTGCCCTTTTCGCCATTTCGATGTTTATTAACAATTGTCCTAAGAACT 346
Query 318 CGGCTTATTGCTCAGCTAGGTTTCTTGGGAGATTTGCTTTTCAGCCTATGAAAGAGAATC 377
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CGGCTTATTGCTTAGCTAGGTTTCTTGGGAGATTTGCTTTTCAGCCTATGAAAGAGAATC 406
Query 378 CTCTTCTGGGTCCTTCTTCTTTGACATTGGAGAAGATGGGGGCTTTAGATGTATCAATGG 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CTCTTCTGGGTCCTTCTTCTTTGACATTGGAGAAGATGGGGGCTTTAGATGTATCAATGG 466
Query 438 TGGTTCATAAGCATGAGGTGTGGCGATTGTTCACGTGTATATGGCTACATGCTGGAGTTT 497
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 467 TGGTTCATAAGCACGAGGTGTGGCGCTTGTTCACTTGTATATGGCTACATGCTGGGGTTT 526
Query 498 TTCATGTTCTTGCCAACATGTTGAGTCTTATCTTCATTGGCATTCGACTCGAGCAAGAAT 557
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 527 TTCATGTTCTTGCCAACATGTTGAGCCTTATCTTCATTGGCATTCGACTTGAGCAAGAAT 586
Query 558 TTGGATTTGTACGCATTGGATTGCTTTATATGATATCTGGATTTGGTGGAAGTTTGTTAT 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TTGGATTTGTACGCATTGGATTGCTTTATATGATATCTGGATTTGGTGGAAGTTTGTTAT 646
Query 618 CTTCTCTCTTTAACCGGGCTGGTATATCTGTTGGTGCCTCTGGAGCATTATTTGGCTTGC 677
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 647 CTTCTCTATTTAACCGGGCTGGTATATCCGTTGGTGCCTCTGGAGCATTATTCGGCTTGC 706
Query 678 TTGGTGCTATGCTTTCAGAGCTTCTCACTAATTGGACTATTTACGCAAATAAGTTTGCAG 737
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 707 TTGGTGCTATGCTTTCAGAGCTTCTCACTAATTGGACTATTTACGCTAATAAGTTTGCAG 766
Query 738 CTCTTTTGACACTCATCTTCATCATAGCCATTAATTTAGCAGTAGGTATTCTTCCACATG 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CTCTTTTGACACTCATCTTCATCATAGCCATTAATTTAGCAGTAGGTATTCTTCCACATG 826
Query 798 TAGACAACTTTGCCCATCTTGGAGGATTCACATCCGGGTTTCTTCTAGGCTTTGTTTTCT 857
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 827 TAGACAACTTTGCCCATCTTGGAGGATTCACATCAGGGTTTCTTCTAGGCTTTGTTTTCT 886
Query 858 TGATCCGTCCTCAGTATGGATACTTCAACCAGAGGAATAATCCTCGCGGTTATGCTGCAC 917
|||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 887 TGATACGTCCTCAGTATGGATACTTCAACCAGCGGAACAATCCTCGGGGTTATGCTGCAC 946
Query 918 CGTCTGCTAAATCCAAACACAAGCCATACCAATACGTTCTCTGGATCACCTCTTTATTGC 977
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 947 CGTCTGCTAAATCCAAACACAAGCCATACCAATACGTTCTTTGGATCACCTCTTTAGTGC 1006
Query 978 TTTTAATAGCTGGATATACCGTTGGACTTGTAGTGCTTCTTCGAGGGACGGATCTGAACA 1037
|||||||||| |||||||||| |||||| ||||||||||||||||| |||||||| ||||
Sbjct 1007 TTTTAATAGCAGGATATACCGCTGGACTCGTAGTGCTTCTTCGAGGAACGGATCTAAACA 1066
Query 1038 AGCACTGTTCATGGTGCCATTATCTCAGCTGTATTCCTACGTCGCTATGGAGCTGTAAAT 1097
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1067 AGCATTGTTCATGGTGCCATTATCTCAGCTGTATTCCTACGTCGCTTTGGAGCTGTAAAT 1126
Query 1098 CTCAAAATGTCTACTGTGAGTCGAGCCAAATTGGACAGCAGATGAACTTGACATGTATCG 1157
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1127 CTCAAAATGTCTACTGTGAGTCGAGCCAAATTGGGCAGCAGATGAACTTGACATGTATCA 1186
Query 1158 CGAATGGGAAAACAGAGATGTACAAGCTTTCTAACGATATCCCGTCTCGGGTTCAGCAGT 1217
|||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 1187 CGAATGGGAAAACAGAGATGTACAAGCTCTCTAACGATATACCGTCTCGGATTCAGCAGT 1246
Query 1218 TGTGTTCCCAATTGTGCCGCTGA-TACCACTAAACGTCTAATTTTTATACTCT-GTAGAA 1275
||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1247 TGTGTTCCCAATTGTGCAGATGAATACCACTAAACGTCTAATTTTTATACTCTTGTAGAA 1306
Query 1276 AGTTAGGAATGT------A--A-GA-----TTGTTCATTTAACATGATCATGCACTTGTG 1321
|||||||||||| | | || ||||||||||||||||||||||||||||||
Sbjct 1307 AGTTAGGAATGTGTCTTGAGGAAGAGAAGATTGTTCATTTAACATGATCATGCACTTGTG 1366
Query 1322 GATTCTTCTTTCTGATCATTGTTTGGTTCCACTTCTTGTTTT---GTTGCATATGTATTG 1378
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1367 GATTCTTCTTTCTGATCATTGTTTGTTTCCACTTCTTGTTTTATTGTTGCATATGTATTG 1426
Query 1379 ACCATGATCTATGTAATGAGAACATAGGTGAAGAGAAAGTT--------TTT--GTTCTT 1428
||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1427 ACCATGATCTATGTAATGAGAACATAGGTGAAGAGAAAGTTGAACAAAGTTTTTGTTCTT 1486
Query 1429 TAACATTTTAATTATAAAT-CAAGATGTTCAAT 1460
|||||||||||||||||| || |||||| |||
Sbjct 1487 AAACATTTTAATTATAAATTCA-GATGTTTAAT 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71987581530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5