BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481830
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29125.1 | Symbols: RTFL2, DVL13 | ROTUNDIFOLIA like 2 | chr... 996 0.0
AT1G07490.1 | Symbols: RTFL3, DVL9 | ROTUNDIFOLIA like 3 | chr1... 132 5e-30
AT1G07485.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 76.8 2e-13
> AT2G29125.1 | Symbols: RTFL2, DVL13 | ROTUNDIFOLIA like 2 | chr2:12523342-12524109
FORWARD LENGTH=768
Length=768
Score = 996 bits (539), Expect = 0.0
Identities = 639/684 (93%), Gaps = 19/684 (3%)
Strand=Plus/Plus
Query 1 tctctctctctctctGAATCACTATCTCTTCCT-CGAGTTCAATCACCACAAACTCACAA 59
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 15 TCTCTCTCTCTCTCTGAATCACTATCTCTT-CTGCGAGTTCAATCACCACAAACTCACAA 73
Query 60 TCAAATAC-AC-TCATCTGA-ATCTGAA-ACCGAATCTC-TCTGCAGAAGCACACATTAT 114
|||||||| || | | | | || || ||| || || |||| | | |||||||||
Sbjct 74 TCAAATACAACAGAAAC--ACA-CTTAAGACC-CAT-TCATCTGGATCTGAACACATTAT 128
Query 115 TGATGGAGGAGAAGTGGAAGCTGTCGAAGAAAGAGACAACAGCTTCTTCTTCCTCCTCTA 174
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 129 TGATGGAGGAGAAGTGGAAGCTGTCGAAGAAAGACACAACAGCTTCTTCTTCCTCCTCTA 188
Query 175 AGTCAAAGTTTTCTAGAAGCTTCTCAACAAGTGCTTCCTCCACAAAGTCTCCAATATTCG 234
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 189 AGTCAAAGTTTTCTAGAAGCTTCTCAACGAGTGCTTCCTCCACAAAGTCTCCAATATTCG 248
Query 235 TAAGGAGTTCCTCTACCAAATGCTCTGttccttcttcctcctcttcttcttcttcttctt 294
|||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct 249 TAAGGAGTTCCTCTACTAAATGCTCTGTTCCTTCTTCCTCCTCGTCCTCTTCTTCTTCCT 308
Query 295 cttctatctcaagaagcttctcaagaaaagagagaagatcttcttcttcatcatcttctt 354
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CTTCAATCTCAAGAAGCTTCTCAAGAAAAGAGAGAAGATCTTCTTCTTCATCATCTTCTT 368
Query 355 ctATCACACAGAAATATAGCAGCTTGGCTAAAGAACAGAAGGCAAGGTTTTACATCATGA 414
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CTATCACTCAGAAATATAGCAGCTTGGCTAAAGAACAGAAGGCAAGGTTTTACATCATGA 428
Query 415 GAAGGTGTGTGGCTATGCTTGTTTGTTGGCACAAACATGGAGATTCTTAACTAGATCTTC 474
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 429 GAAGGTGTGTGGCTATGCTTGTTTGTTGGCACAAACATGGAGATTCTTAATTAGATCTTC 488
Query 475 ATCTTCTTCTTCC--tttttttt-GTTTCCTTGTAATTAGATCAGTTTGATTATTAAGGG 531
|||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 489 ATCTTCTTCTGCCCCTTTTTTTTTGTTTCCTTGTAATTAGATCAGTTTGATTATTAAGGG 548
Query 532 TTTCCATACAAGTACATTGTAAGAAGAGATTTTGTTaaaaaaaTTTAGGGTTTCTATGCT 591
|||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 549 TTTCCATACAAGTACATTGTAAGAAGAGTTTTTGTTTAAAAAATT-AGGGTTTCTATGCT 607
Query 592 AAtttttttCAATTATATGACTTGCATATGCTACATATATACACAATCATAGATATGTGT 651
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 608 CATTTTTTTCAATTAAATGACTTGCATATGCTACATATATACACAATCATAGACATGTGT 667
Query 652 GGTGTATATGTATCATTAATGCAA 675
| ||||| |||||||| ||||||
Sbjct 668 G-TGTAT--GTATCATTGATGCAA 688
> AT1G07490.1 | Symbols: RTFL3, DVL9 | ROTUNDIFOLIA like 3 | chr1:2301380-2302021
REVERSE LENGTH=642
Length=642
Score = 132 bits (71), Expect = 5e-30
Identities = 176/222 (79%), Gaps = 26/222 (12%)
Strand=Plus/Plus
Query 360 ACACAGAAA-TATAGCAGCTTGGCTAAAGAACAGAAGGCAAGGTTTTACATCATGAGAAG 418
||||| ||| || || |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 395 ACACA-AAAGTACAGTAGCTTGGCCAAAGAACAGAAGGGAAGGTTTTACATCATGAGAAG 453
Query 419 GTGTGTGGCTATGCTTGTTTGTTGGCACAAACATGGAGATTCTTAACTAGATCTTCATCT 478
|||||||||||||||||| |||||||| ||||||| | ||| || ||||| | ||||
Sbjct 454 GTGTGTGGCTATGCTTGTATGTTGGCATAAACATG-A--TTCCTAGGTAGATATAGATCT 510
Query 479 TCTTCTTCCttttt-tt-tGTTTCCTTGTA--ATTAGATCAGTTTGATT----A-T-TAA 528
| | | ||||| || | ||| ||| | ||||||||||||||||| | | |||
Sbjct 511 -CATG--CATTTTTATTCTCTTTTTTTGAATGATTAGATCAGTTTGATTCTCTACTCTAA 567
Query 529 G--G------GTTTCCATACAAGTACATTGTAAGAAGAGATT 562
| | |||||||||| |||||||||||||||||||||
Sbjct 568 GTTGCCACAAGTTTCCATACTAGTACATTGTAAGAAGAGATT 609
> AT1G07485.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot
apex, embryo, leaf whorl, pedicel; EXPRESSED DURING: 4
anthesis, D bilateral stage; Has 5 Blast hits to 5 proteins
in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr1:2301375-2302121 FORWARD LENGTH=662
Length=662
Score = 76.8 bits (41), Expect = 2e-13
Identities = 133/173 (77%), Gaps = 24/173 (14%)
Strand=Plus/Minus
Query 408 ATCATGAGAAGGTGTGTGGCTATGCTTGTTTGTTGGCACAAACATGGAGATTCTTAACTA 467
||||||||||||||||||||||||||||| |||||||| ||||||| | ||| || ||
Sbjct 205 ATCATGAGAAGGTGTGTGGCTATGCTTGTATGTTGGCATAAACATG-A--TTCCTAGGTA 149
Query 468 GATCTTCATCTTCTTCTTCCttttt-tt-tGTTTCCTTGTA--ATTAGATCAGTTTGATT 523
||| | |||| | | | ||||| || | ||| ||| | |||||||||||||||||
Sbjct 148 GATATAGATCT-CATG--CATTTTTATTCTCTTTTTTTGAATGATTAGATCAGTTTGATT 92
Query 524 ----A-T-TAAG--G------GTTTCCATACAAGTACATTGTAAGAAGAGATT 562
| | |||| | |||||||||| |||||||||||||||||||||
Sbjct 91 CTCTACTCTAAGTTGCCACAAGTTTCCATACTAGTACATTGTAAGAAGAGATT 39
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5