BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481858
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29400.1 | Symbols: TOPP1, PP1-AT | type one protein phospha... 1784 0.0
AT5G59160.1 | Symbols: TOPP2, PPO | type one serine/threonine p... 560 1e-158
> AT2G29400.1 | Symbols: TOPP1, PP1-AT | type one protein phosphatase
1 | chr2:12613081-12615399 REVERSE LENGTH=1404
Length=1404
Score = 1784 bits (966), Expect = 0.0
Identities = 1100/1163 (95%), Gaps = 15/1163 (1%)
Strand=Plus/Plus
Query 57 AAGCTTCACGCTTGAAAATCTCCGTTCGTTTTCCACCTC-TATTAGATCGGAGATGGCGG 115
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 65 AAGCTTCACGCTTGAAAATCTCCGTTCGTTTTCTACCTCGT-TTAGATCGGAGATGGCGG 123
Query 116 AGAAGCCGGCGCAAGAGCAGGAGCAAAAGCGAGCGATGGAACCGGGTGTTCTGGACGATA 175
||||||||||||||||||| ||||| ||||||||||||||||| | ||||| |||||||
Sbjct 124 AGAAGCCGGCGCAAGAGCAAGAGCAGAAGCGAGCGATGGAACCTGCAGTTCTCGACGATA 183
Query 176 TCATTCGTCGTTTGGTTGAGTTTCGGAACACGAGACCTGGATCGGGGAAACAAGTTCATC 235
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 184 TTATTCGTCGTTTGGTTGAGTTTCGGAACACGAGACCTGGATCGGGGAAGCAAGTTCATC 243
Query 236 TCAGTGAAGGTGAAATTCGTCAGCTTTGTGCTGTCTCCAAAGAAATCTTTCTTCAACAAC 295
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 244 TCAGTGAAGGTGAAATTCGTCAGCTTTGTGCTGTCTCCAAAGAAATATTTCTTCAACAGC 303
Query 296 CCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGGTGATATTCATGGGCAGTATT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGGTGATATTCATGGGCAGTATT 363
Query 356 CAGATCTATTGAGGCTGTTTGAGTATGGAGGCTTTCCTCCCGAAGCCAATTATTTGTTCT 415
|||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||
Sbjct 364 CAGATCTATTGAGGCTTTTTGAGTATGGAGGGTTCCCTCCCGAAGCTAATTATTTGTTCT 423
Query 416 TAGGTGACTATGTTGACCGTGGCAAGCAAAGCTTGGAAACAATATGCCTTCTCCTAGCTT 475
| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 424 TGGGTGATTATGTTGACCGTGGCAAGCAAAGCTTGGAAACAATATGTCTTCTTCTAGCTT 483
Query 476 ACAAAATCAAGTACCCTGAGAACTTCTTCTTGCTGAGAGGGAATCATGAATCTGCCTCCA 535
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 484 ACAAAATCAAGTACCCTGAGAACTTCTTCTTGTTGAGAGGGAATCATGAATCTGCTTCCA 543
Query 536 TTAATCGTATTTACGGTTTCTATGACGAGTGCAAACGCAGGTTCAATGTCAGACTCTGGA 595
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 544 TTAATCGTATTTACGGTTTCTATGATGAGTGCAAACGCAGGTTCAATGTCAGACTCTGGA 603
Query 596 AAATATTCACTGATTGCTTTAACTGTCTTCCTGTGGCCGCCTTAATTGATGACAGAATAC 655
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 AAATATTCACCGATTGCTTTAACTGTCTTCCTGTGGCCGCCTTAATTGATGACAGAATAC 663
Query 656 TATGTATGCATGGTGGGATTTCCCCAGAGTTGACAAGTTTGGACCAGATTAGAAATATTG 715
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 664 TATGTATGCATGGTGGGATTTCCCCAGAGCTGAAAAGTTTGGACCAGATTAGAAATATTG 723
Query 716 CACGTCCAATGGATATTCCAGACTCTGGTTTGGTATGTGATTTACTGTGGTCGGATCCTA 775
|||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 724 CACGGCCGATGGATATTCCGGAGTCTGGTTTGGTATGTGATTTACTATGGTCGGATCCTA 783
Query 776 GTGGAGACGTCAAAGGCTGGGGCATGAACGATCGCGGTGTTTCATACACTTTTGGAGCTG 835
|||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 784 GTGGAGACGT---AGGCTGGGGCATGAATGATCGTGGTGTTTCATACACTTTTGGAGCTG 840
Query 836 ACAAAGTCGCAGAGTTTTTGGaaaaaaaTGACATGGACCTTATCTGTCGTGCCCACCAGG 895
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 841 ACAAAGTCGCAGAGTTCTTGGAGAAACATGACATGGACCTTATCTGTCGTGCCCACCAGG 900
Query 896 TTGTTGAAGATGGGTATGAGTTCTTTGCAGACAGACAGCTTGTTACAGTATTTTCAGCTC 955
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 901 TTGTTGAAGATGGGTATGAGTTCTTTGCAGAAAGACAACTTGTTACAGTATTTTCAGCTC 960
Query 956 CCAACTATTGCGGGGAATTTGACAACGCTGGCGCAATGATGAGCATTGATGAGAGCTTAA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCAACTATTGCGGGGAATTTGACAACGCTGGCGCAATGATGAGCATTGATGAGAGCTTAA 1020
Query 1016 TGTGCTCATTCCAAATTCTAAAACCGTCAGAAAAGAGGTCGCCTTTTCAATGACAACC-A 1074
||||||||||||| |||||||| ||||||||||||| ||||||||||| ||||| || |
Sbjct 1021 TGTGCTCATTCCAGATTCTAAAGCCGTCAGAAAAGAAGTCGCCTTTTCTGTGACA-CCGA 1079
Query 1075 TTATCCAATGACCACCAT-GCTTCAAATTAACAATTCT-CGAAAAG--GTAACTACTTGC 1130
||||||| |||||||||| ||||||||||||||||||| | ||||| ||| |||| ||
Sbjct 1080 TTATCCAGTGACCACCATTGCTTCAAATTAACAATTCTAC-AAAAGTTGTA--TACTGGC 1136
Query 1131 GAGAGGAACTAGAGACGGAAACTGCTCAATTGGGACGTTAATGGTACTGATAAATAGTGC 1190
|||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 1137 AAGAGGATCTAGAGACGGAAACTGCTCAATTGGGACCTTAATGGTACTGATAA-TAGAGC 1195
Query 1191 ATTAGACATGTAGCTGTTGACAG 1213
|||||||||||||||||||||||
Sbjct 1196 ATTAGACATGTAGCTGTTGACAG 1218
Score = 75.0 bits (40), Expect = 2e-12
Identities = 79/95 (83%), Gaps = 14/95 (15%)
Strand=Plus/Plus
Query 1255 AATAATATTAGATTCTCATTTGTACTCTCTATTTATTTATAAAAAGTTAAAAACCCAAAT 1314
||||||||||||||||||||||||||||||||||||||| | | || |||||||
Sbjct 1324 AATAATATTAGATTCTCATTTGTACTCTCTATTTATTTAGGA---G--AA---CCCAAAT 1375
Query 1315 TCAAAACTTTACttttttttAGTCTCTTCACCACC 1349
|||||||||| |||| |||||||||||||||
Sbjct 1376 TCAAAACTTT--TTTT----AGTCTCTTCACCACC 1404
> AT5G59160.1 | Symbols: TOPP2, PPO | type one serine/threonine
protein phosphatase 2 | chr5:23879349-23881688 FORWARD LENGTH=1468
Length=1468
Score = 560 bits (303), Expect = 1e-158
Identities = 646/808 (80%), Gaps = 38/808 (5%)
Strand=Plus/Plus
Query 246 TGAAATTCGTCAGCTTTGTGC-T-GTCTCCAAAGAAATCTTTCTTCAACAACCCAATCTG 303
||| || ||||||| || ||| | ||||| | ||| || ||||||||||| || || ||
Sbjct 335 TGAGATCCGTCAGC-TT-TGCATCGTCTCTAGAGAGATTTTTCTTCAACAGCCTAACCTT 392
Query 304 CTTGAATTGGAAGCTCCCATCAAGATCTGCGGTGATATTCATGGGCAGTATTCAGATCTA 363
||||| | |||||||| |||||||||||||||||||||||||| || || |||||||||
Sbjct 393 CTTGAGCTCGAAGCTCCTATCAAGATCTGCGGTGATATTCATGGACAATACTCAGATCTA 452
Query 364 TTGAGGCTGTTTGAGTATGGAGGCTTTCCTCCCGA-AGCCAATTATTTGTTCTTAGGTGA 422
|||||||||||||||||||||||||| || || | ||| || ||||| |||||||| ||
Sbjct 453 TTGAGGCTGTTTGAGTATGGAGGCTTCCCACCT-ACAGCTAACTATTTATTCTTAGGAGA 511
Query 423 CTATGTTGACCGTGGCAAGCAAAGCTTGGAAACAATATGCCTTCTCCTAGCTTACAAAAT 482
|| || ||| | |||||||| || ||||| || || || ||||| || |||||||||||
Sbjct 512 TTACGTAGACAGGGGCAAGCAGAGTTTGGAGACTATTTGTCTTCTGCTTGCTTACAAAAT 571
Query 483 CAAGTACCCTGAGAACTTCTT-CTTGCTGAGAGGGAATCATGAATCTGCCTCCATTAATC 541
||| |||||||||||||| || ||| || ||||| || || |||| ||| || ||||| |
Sbjct 572 CAAATACCCTGAGAACTTTTTTCTT-CTAAGAGGAAACCACGAATGTGCTTCTATTAA-C 629
Query 542 -GTATTTACGGTTTCTATGACGAGTGCAAACG-CAGGTTCAATGTCAGACTCTGGAAAAT 599
| || || || |||||||| || || ||||| | | |||| ||| |||||||||||| |
Sbjct 630 AGAATCTATGGATTCTATGATGAATGTAAACGTC-GATTCAGTGTGAGACTCTGGAAAGT 688
Query 600 ATTCACTGATTGCTTT-AACTGTCTTCCTGTGGCCGCC-TTAATTGATGACA-GAATACT 656
|| || |||| |||| |||||||| ||||| || || ||| | || || | || || |
Sbjct 689 GTTTACAGATT-CTTTTAACTGTCTCCCTGTTGCTGCTGTTA-TAGACGATAAGA-TATT 745
Query 657 ATGTATGCATGGTGGGATTTC-CCCAGAGTTGAC-AA-GTTTGGACCAGATTA-GAAATA 712
||||||||| ||||| |||| ||| || ||||| || || ||| ||||||| ||| |
Sbjct 746 ATGTATGCACGGTGGCCTTTCTCCC-GATTTGACCAACGT--GGAACAGATTAAGAAC-A 801
Query 713 TTGCA-CGTCCAA-TGGATATTCCAGACTCTGGTTTGGTATGTGATTTACTGTGGTCGGA 770
|| | || || | || || |||| |||||||||||| | |||||| | || ||||| ||
Sbjct 802 TTA-AGCGACCTACTG-ATGTTCCTGACTCTGGTTTGCTCTGTGATCTGCTTTGGTCTGA 859
Query 771 TCCTAGTGGAGACGTCAAAGGCTGGGGCATGAACGATCGCGGTGTTTCATACACTTTTGG 830
||| || ||| |||||||| ||||| ||||| || || || || || ||||| |||||
Sbjct 860 TCCAAGCAAAGATGTCAAAGGTTGGGGGATGAATGACCGTGGAGTCTCTTACACGTTTGG 919
Query 831 AGCTGACAAAGTCGCAGAGTTTTTGGaa-aaa-aaTGACATGGACCTTATCTGTCGTGCC 888
||||||||||||| |||||| | || ||| ||||| ||||| || ||||| ||||||
Sbjct 920 CCCTGACAAAGTCGCGGAGTTTCT--AATAAAGAATGATATGGATCTCATCTGCCGTGCC 977
Query 889 CACCAGGTTGTTGAAGATGGGTATGAGTTCTTT-GCAGACAGACAGCTTGTTAC-AGTAT 946
||||||||||| || ||||| |||||||| ||| || || |||||||||||||| | |||
Sbjct 978 CACCAGGTTGTAGAGGATGGATATGAGTT-TTTCGCCGATAGACAGCTTGTTACGA-TAT 1035
Query 947 TTTCAGCTCCCAACTATTGCGGGGAATTTGACAACGCTGGCGCAATGATGAGCATTGATG 1006
|||| ||||||||||| || || ||||||||||| ||||| || |||||||| ||||||
Sbjct 1036 TTTCTGCTCCCAACTACTGTGGTGAATTTGACAATGCTGGTGCTATGATGAGTGTTGATG 1095
Query 1007 AGAGCTTAATGTGCTCATTCCAAATTCT 1034
| || ||||||||||| |||||||||||
Sbjct 1096 AAAGTTTAATGTGCTCTTTCCAAATTCT 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66415321035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5