BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481860
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29440.1 | Symbols: ATGSTU6, GST24, GSTU6 | glutathione S-tr... 1140 0.0
AT2G29450.1 | Symbols: ATGSTU5, ATGSTU1, AT103-1A, GSTU5 | glut... 636 0.0
AT2G29490.1 | Symbols: ATGSTU1, GST19, GSTU1 | glutathione S-tr... 398 5e-110
> AT2G29440.1 | Symbols: ATGSTU6, GST24, GSTU6 | glutathione S-transferase
tau 6 | chr2:12620060-12621148 REVERSE LENGTH=820
Length=820
Score = 1140 bits (617), Expect = 0.0
Identities = 682/713 (96%), Gaps = 6/713 (1%)
Strand=Plus/Plus
Query 1 AGAAGAAGAAGaaaaaaaGAAGA--T--CTAATGGGCAAAAATGAGGAAGTGAAGCTTTT 56
|||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 19 AGAAGAAGCAGAAAGAAAGAAGATCTAACTAATGGGCAAAAATGAGGAAGTGAAGCTTTT 78
Query 57 AGGAACATGGGCAAGCCCTTTCAGCCGTCGGATCGAGATGGCTCTCAAACTCAAAGGCGT 116
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 79 GGGAATATGGGCGAGCCCTTTCAGCCGTCGGATCGAGATGGCTCTCAAACTCAAAGGTGT 138
Query 117 ACCGTACGAATACTTGGAGGAAGATCTGGACAATAAGAGCTCTTTGCTTCTTGCTCTAAG 176
||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 139 ACCGTACGAATACTTGGAGGAAGATTTGGAGAACAAGAGCTCTTTGCTTCTTGCTCTAAG 198
Query 177 CCCTATTCACAAGAAGATCCCTGTTCTTGTTCACAATGGTAAAACCATTATCGAGTCGCA 236
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 199 CCCTATTCACAAGAAGATCCCTGTTCTTGTTCATAATGGTAAAACCATTATCGAGTCGCA 258
Query 237 TGTGATCCTCGAATACATCGATGAGACTTGGAAACACAATCCCATTCTTCCTCAGGATCC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TGTGATCCTCGAATACATCGATGAGACTTGGAAACACAATCCCATTCTTCCTCAGGATCC 318
Query 297 TTTCCAAAGATCCAAGGCTCGAGTCTTAGCAAAACTCGTTGATGAACAGATAGTAAATGT 356
||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 319 CTTCCAAAGATCCAAGGCTCGAGTCTTAGCTAAACTTGTTGATGAAAAGATAGTAAATGT 378
Query 357 CGGG-TTTGCCTCACTGGCTAAAACAGAGAAAGGAAGAGAGGTTTTGATCGAGCAGACAA 415
||| |||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||
Sbjct 379 -GGGATTTGCCTCACTGGCCAAAACAGAGAAAGGAAGAGAAGTTCTGATTGAGCAGACAA 437
Query 416 GAGAATTGATTATGAGTCTCGAAAAAGAACTCGCCGGAAAAGATTACTTCGGGGGCAAGA 475
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 438 GAGAATTGATTATGTGTCTCGAAAAAGAACTCGCCGGAAAAGATTACTTCGGCGGCAAGA 497
Query 476 CAGTCGGATTCTTGGACTTTGTCGCCGGAAGTATGATCCCGTTTTGTTTGGAGAGGGCTT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 CAGTCGGATTCTTGGACTTTGTCGCCGGAAGTATGATCCCGTTTTGTTTGGAGAGGGCTT 557
Query 536 GGGAAGGAATGGGAGTGGAGATGATTACAGAGAAAAAGTTTCCAGAATACAACAAATGGG 595
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 558 GGGAAGGAATGGGAGTGGAGATGATTACAGAGAAAAAGTTTCCAGAATATAACAAATGGG 617
Query 596 TGAAGAAGCTGAAGGAGGTTGAGATCGTTGTTGATTGTATTCCTCCAAGAGAGAAACATA 655
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 618 TGAAGAAGCTGAAGGAGGTTGAGATCGTTGTTGATTGTATTCCTCTAAGAGAGAAACATA 677
Query 656 TTGAACACATGAACAATATGGCAGAGAAAATCAGATCCGCTTAATTAAGAAGA 708
||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 678 TTGAACACATGAACAATATGGCAGAGAAAATTAGATCTGCTTAATTCAGAAGA 730
> AT2G29450.1 | Symbols: ATGSTU5, ATGSTU1, AT103-1A, GSTU5 | glutathione
S-transferase tau 5 | chr2:12624586-12625637 REVERSE
LENGTH=934
Length=934
Score = 636 bits (344), Expect = 0.0
Identities = 570/677 (84%), Gaps = 24/677 (4%)
Strand=Plus/Plus
Query 36 AAATGAGGAAGTGAAGCTTTTAGGAACATGGGCAAGCCCTTTCAGCCGTCGGATCGAGAT 95
||| || |||||||||||||| || | |||||| |||||||| ||||||||| |||||||
Sbjct 81 AAA-GAAGAAGTGAAGCTTTTGGGGATATGGGCGAGCCCTTTTAGCCGTCGGGTCGAGAT 139
Query 96 GGCTCTCAAACTCAAAGGCGTACCGTACGAATACTTGGAGGAAGAT-CTGGACAATAAGA 154
||||||||||||||||||| |||||||||| ||| |||| | |||| ||||| || || |
Sbjct 140 GGCTCTCAAACTCAAAGGCATACCGTACGAGTACGTGGAAG-AGATACTGGAGAACAAAA 198
Query 155 GCTCTTTGCTTCTTGCTC-TAAGCCCTATTCACAAG-AAGATCCCTGTTCTTGTTCACAA 212
|| ||||||||||||||| ||| ||||||||||||| ||| ||||||||||||| |||||
Sbjct 199 GCCCTTTGCTTCTTGCTCTTAA-CCCTATTCACAAGAAAG-TCCCTGTTCTTGTCCACAA 256
Query 213 TGGTAAAACCATTATCGAGTCGCATGTGATCCTCGAATACATCGATGAGACTTGGAAACA 272
||||||||||||| ||||||| |||||||| || ||||||||||||||||||||| |||
Sbjct 257 TGGTAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTGGCCACA 316
Query 273 CAATCCCATTCTTCCTCAGGATCCTT-TCCAAAGATCCAAGGCTCGAGTCTTAGCAAAAC 331
||||| ||||| ||||| ||||||| | |||||||||| ||||| |||| || ||||
Sbjct 317 AAATCCAATTCTCCCTCAAGATCCTTAT-GAAAGATCCAAAGCTCGTTTCTTTGCTAAAC 375
Query 332 TCGTTGATGAACAGA-TAGTAAATGTCGGGTTTGCCTCACTGGCTAA-A--ACA-GAGAA 386
|||| |||||||||| || | || || |||||| ||| |||| || | | | |||||
Sbjct 376 TCGTCGATGAACAGATTA-TGAACGTGGGGTTTATATCAATGGC-AAGAGCAGACGAGAA 433
Query 387 AGGAAGAGAGGTTTTGA-TCGAGCAGACAAGAGAATTGATTATG-AGTCTCGAAAAAGAA 444
||||||||| ||||| | ||||||| ||||||| |||||||| | |||||| ||||||
Sbjct 434 AGGAAGAGAAGTTTT-AGCCGAGCAGGTAAGAGAACTGATTATGTA-TCTCGAGAAAGAA 491
Query 445 CTCGCCGGAAAAGATTACTTCGGGGGCAAGACAGTCGGATTCTTGGACTTTGTCGCCGGA 504
|| | |||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 492 CTTGTCGGAAAAGATTACTTCGGAGGCAAGACTGTCGGATTCTTGGACTTTGTCGCCGGA 551
Query 505 AGTATGATCCCGTTTTGTTTGGAGAG-GGCTTGGGAAGGAATGGGAGTGGA-GATGATTA 562
||| | || ||||||||||||||||| || |||||||||||| ||| |||| | ||||||
Sbjct 552 AGTTTAATTCCGTTTTGTTTGGAGAGAGG-TTGGGAAGGAATAGGATTGGAAG-TGATTA 609
Query 563 CAGAGAAAAAGTTTCCAGAATACAACAAATGGGTGAAGAAGCTGAAGGAGGTTGAGATCG 622
||||| | ||||||||||| | ||| | |||||| | ||| || || |||||||||| |
Sbjct 610 CAGAGGAGAAGTTTCCAGAGTTCAAGAGATGGGTTAGGAATTTGGAGAAGGTTGAGATTG 669
Query 623 TTGTTGATTGTATTCCTCCAAGAGAGAAACATATTGAACACATGAACAATATGGCAGAGA 682
|| |||||| |||| ||||||||| ||||| | |||||||||||| ||||||||||||
Sbjct 670 TTAAAGATTGTGTTCCACCAAGAGAGGAACATGTAGAACACATGAACTATATGGCAGAGA 729
Query 683 AAATCAGATCCGCTTAA 699
| | ||||| |||||
Sbjct 730 GAGTGAGATCTTCTTAA 746
> AT2G29490.1 | Symbols: ATGSTU1, GST19, GSTU1 | glutathione S-transferase
TAU 1 | chr2:12631378-12632473 REVERSE LENGTH=1003
Length=1003
Score = 398 bits (215), Expect = 5e-110
Identities = 516/658 (78%), Gaps = 34/658 (5%)
Strand=Plus/Plus
Query 46 GTGAAGCTTTTAGGAACATGGGCAAGCCCTTTCAGCCGTCGGA-TCGAGATGGCTCTCAA 104
||||||||| |||| |||||||||||||| || |||| || ||||||||||||||||
Sbjct 135 GTGAAGCTTCTAGGGTTTTGGGCAAGCCCTTTTAGTCGTC-GAGTCGAGATGGCTCTCAA 193
Query 105 ACTCAAAGGCGTACCGTACGAATACTTGGAGGAAGATCTGGACAATAAGAGCTCTTTGCT 164
|||||||||||| || |||||||||||||| |||||| || ||| |||| | |||||||
Sbjct 194 ACTCAAAGGCGTGCCATACGAATACTTGGAAGAAGATTTGCCCAACAAGACCCCTTTGCT 253
Query 165 TCTTGCTCTAAGCCCTATTCACAAGAA-GATCCCTGTTCTTGTTCACAATGGTAAAACCA 223
||| | |||| ||| |||||||||| | ||| |||||||| ||||||| |||| |
Sbjct 254 TCTGGAGCTAAACCCGCTTCACAAGAAAGTTCCG-GTTCTTGTCCACAATGACAAAAT-A 311
Query 224 TTA-TCGAGTCGCATGTGATCCTCGAATACATCGATGAGACTTGGAA-ACACAATCCCAT 281
||| ||||||| ||| |||| ||||||||||||||| |||| ||||| | ||| ||| ||
Sbjct 312 TTACTCGAGTCACATCTGATTCTCGAATACATCGATCAGACGTGGAAGA-ACAGTCCAAT 370
Query 282 TCTTCCTCAGGATCCTTTCCA-AAGATCCAAGGCTCGAGTCTTAG-CAAAACTCGTTGAT 339
||||||||| ||||||| | | ||| ||| ||||||| | || | | || || | |||
Sbjct 371 TCTTCCTCAAGATCCTTACGAGAAGG-CCATGGCTCGATT-TTGGGCCAAGTTCATCGAT 428
Query 340 GAACAGATAGTAA-ATGTCGGGTTT-GCCTCACTGGCTAAAA-CAGAGAAAGGAAGAGAG 396
|| ||||| ||| | | |||||| | || || | ||||| |||||||||||||||||
Sbjct 429 GACCAGATCCTAACAC-TAGGGTTTAGG-TCCCTTG-TAAAAGCAGAGAAAGGAAGAGAG 485
Query 397 GTTT-TGATCGA-GCAGACAAGAGAATTGATTATGAGTCTCGAAAAAGAACTCGCCGGAA 454
||| | || || | |||| | ||| || ||||| ||| || |||||| || | ||||
Sbjct 486 GTTGCT-ATTGAAG-AGACTCGGGAACTGCTTATGTTTCTTGAGAAAGAAGTCACTGGAA 543
Query 455 AAGATTACTTCGGGGGCAAGACAGTCGGATTCTTGGACTTTG-TCGCCGGAAGTATGATC 513
|||||| |||||| ||||||||| |||||||||||||| | | |||| ||||||||||||
Sbjct 544 AAGATTTCTTCGGTGGCAAGACAATCGGATTCTTGGACAT-GATCGCAGGAAGTATGATC 602
Query 514 CCGTTTTGTTTGGAGAGGGCTTGGGAA-GGAATGGGAGTGGAGATGATTACAGAGAAAAA 572
|| |||||| | | || ||| |||| || || ||| | || |||||| ||||| | ||
Sbjct 603 CCATTTTGTCTAGCTAGA-CTTTGGAAAGGTATTGGAATTGATATGATTCCAGAGGAGAA 661
Query 573 GTTTCCAGAAT-ACAACAAATGGGTGAAGAAGCTG-AAGGAGGTTGAGATC-GTT-GTTG 628
|||||| |||| | || | |||| | ||||| || ||| || ||||| | || | |
Sbjct 662 GTTTCCGGAATTA-AATAGATGGATCAAGAATTTGGAAGAAG-TTGAGG-CAGTGAGGGG 718
Query 629 ATTGTATTCCTCCAAGAGAGAAACATATTGAACACATGAACAATATGGCAGAGAAAAT 686
|| |||||||||||||||||||||| ||||| | ||||| ||| || ||||||| |||
Sbjct 719 AT-GTATTCCTCCAAGAGAGAAACAAATTGAGCGCATGACCAAAATTGCAGAGACAAT 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35766712664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5