BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481861
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29450.1 | Symbols: ATGSTU5, ATGSTU1, AT103-1A, GSTU5 | glut... 1295 0.0
AT2G29440.1 | Symbols: ATGSTU6, GST24, GSTU6 | glutathione S-tr... 658 0.0
> AT2G29450.1 | Symbols: ATGSTU5, ATGSTU1, AT103-1A, GSTU5 | glutathione
S-transferase tau 5 | chr2:12624586-12625637 REVERSE
LENGTH=934
Length=934
Score = 1295 bits (701), Expect = 0.0
Identities = 818/872 (94%), Gaps = 18/872 (2%)
Strand=Plus/Plus
Query 1 AATGGCGGAGAAAGACCAAGTGAAGCTTTTGGGAATATGGGCGAGCCCTTTTAGCCGTCG 60
|||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 71 AATGGCTGAGAAAGAAGAAGTGAAGCTTTTGGGGATATGGGCGAGCCCTTTTAGCCGTCG 130
Query 61 GGTCGAGATGGCTCTCAAACTCAAAGGCATACCGTACGATTACGTGGAAGAAATATTGGA 120
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 131 GGTCGAGATGGCTCTCAAACTCAAAGGCATACCGTACGAGTACGTGGAAGAGATACTGGA 190
Query 121 GAACAAAAGCCCTTTGCTTCTTGCTCTTAACCCTATTCACAAGAAAGTCCCTGTTCTTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GAACAAAAGCCCTTTGCTTCTTGCTCTTAACCCTATTCACAAGAAAGTCCCTGTTCTTGT 250
Query 181 CCACAATGGTAAAACCATTCTTGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTG 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 251 CCACAATGGTAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTG 310
Query 241 GCCACACAATCCAATTCTCCCTCAAGATCCTTACGAGAGATCCAAAGCTCGATTCTTTGC 300
|||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 311 GCCACAAAATCCAATTCTCCCTCAAGATCCTTATGAAAGATCCAAAGCTCGTTTCTTTGC 370
Query 301 AAAACTCGTCGATGAACAGATTATGAATGTGGGGTTTGTATCAATGGCAAGAGCAGACGA 360
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 371 TAAACTCGTCGATGAACAGATTATGAACGTGGGGTTTATATCAATGGCAAGAGCAGACGA 430
Query 361 GAAAGGAAGAGAAGTTTTAGCCGAGCAGGCAAGAGAACTAATCATGTATCTTGAGAAAGA 420
||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||
Sbjct 431 GAAAGGAAGAGAAGTTTTAGCCGAGCAGGTAAGAGAACTGATTATGTATCTCGAGAAAGA 490
Query 421 ACTTGTCGGAAAAGATTACTTCGGTGGCAAGACTGTCGGATTCTTGGACTTTGTGGCCGG 480
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 491 ACTTGTCGGAAAAGATTACTTCGGAGGCAAGACTGTCGGATTCTTGGACTTTGTCGCCGG 550
Query 481 AAGTTTGATTCCGTTTTGTTTGGAGAGAGGTTGGGAAGGAATAGGATTGGAAGTGATTAC 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AAGTTTAATTCCGTTTTGTTTGGAGAGAGGTTGGGAAGGAATAGGATTGGAAGTGATTAC 610
Query 541 AGAGGAGAAGTTTCCAGAATTCAAGAGATGGGTTAAGAATTTGGAGAAGGTTGAGATTGT 600
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 611 AGAGGAGAAGTTTCCAGAGTTCAAGAGATGGGTTAGGAATTTGGAGAAGGTTGAGATTGT 670
Query 601 TAAAGATTGTGTTCCACCAAGAGAGAAACATGTAGAACACATGAACTATATGGCAGAGAG 660
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 671 TAAAGATTGTGTTCCACCAAGAGAGGAACATGTAGAACACATGAACTATATGGCAGAGAG 730
Query 661 AGTGAGATCTTCTTAATTAATTAAGACAACAAATCATGTTTAGTTCTTGATCATGCAATG 720
|||||||||||||||| || || ||| | |||||||||||||||||||||||||||
Sbjct 731 AGTGAGATCTTCTTAAG-AA--AA--CAA-A--TCATGTTTAGTTCTTGATCATGCAATG 782
Query 721 TTTGTATAGTTTTGTTGTTGTTTATTCTAATGAATAAGGATTTCTTTTTATGTTGTGTGG 780
||||||| ||| |||||||||||||| || |||||| | |||| ||||||||||||
Sbjct 783 TTTGTATGGTTATGTTGTTGTTTATTTTATTGAATA----T--CTTTGTATGTTGTGTGG 836
Query 781 TTGAGAGAGTGAGGATTTATCATCATTTCTCACGTTATCTTATTTGGTCCCCACGGTCAC 840
|||||| ||||||| ||||||||||| |||||||||||||||||||||||| | | |||
Sbjct 837 TTGAGA-AGTGAGGTTTTATCATCATCTCTCACGTTATCTTATTTGGTCCC-A-GC-CAC 892
Query 841 TCTCTAGAATTAATGGTAAAGCTTTGGCTATT 872
| | ||||||||||||||||||||||||||||
Sbjct 893 TATTTAGAATTAATGGTAAAGCTTTGGCTATT 924
> AT2G29440.1 | Symbols: ATGSTU6, GST24, GSTU6 | glutathione S-transferase
tau 6 | chr2:12620060-12621148 REVERSE LENGTH=820
Length=820
Score = 658 bits (356), Expect = 0.0
Identities = 570/671 (85%), Gaps = 23/671 (3%)
Strand=Plus/Plus
Query 18 AAGTGAAGCTTTTGGGAATATGGGCGAGCCCTTTTAGCCGTCGGGTCGAGATGGCTCTCA 77
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 66 AAGTGAAGCTTTTGGGAATATGGGCGAGCCCTTTCAGCCGTCGGATCGAGATGGCTCTCA 125
Query 78 AACTCAAAGGCATACCGTACGATTACGTGGAAGAA-ATATTGGAGAACAAAAGCCCTTTG 136
|||||||||| |||||||||| ||| |||| ||| || ||||||||||| ||| |||||
Sbjct 126 AACTCAAAGGTGTACCGTACGAATACTTGGAGGAAGAT-TTGGAGAACAAGAGCTCTTTG 184
Query 137 CTTCTTGCTCTTAA-CCCTATTCACAAGAA-AGTCCCTGTTCTTGTCCACAATGGTAAAA 194
||||||||||| || ||||||||||||||| | ||||||||||||| || ||||||||||
Sbjct 185 CTTCTTGCTCT-AAGCCCTATTCACAAGAAGA-TCCCTGTTCTTGTTCATAATGGTAAAA 242
Query 195 CCATTCTTGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTGGCCACACAATCCAA 254
||||| | ||||| |||||||| || ||||||||||||||||||||| ||||||||| |
Sbjct 243 CCATTATCGAGTCGCATGTGATCCTCGAATACATCGATGAGACTTGGAAACACAATCCCA 302
Query 255 TTCTCCCTCAAGATCC-TTACGAGAGATCCAAAGCTCGATTCTTTGCAAAACTCGTCGAT 313
|||| ||||| ||||| || | | |||||||| |||||| |||| || ||||| || |||
Sbjct 303 TTCTTCCTCAGGATCCCTTCCAA-AGATCCAAGGCTCGAGTCTTAGCTAAACTTGTTGAT 361
Query 314 GAACAGATTA-TGAATGTGGGGTTTGTATCAATGGC-AAGAGCAGACGAGAAAGGAAGAG 371
||| |||| | | |||||||| |||| ||| |||| || | |||| || || |||||||
Sbjct 362 GAAAAGAT-AGTAAATGTGGGATTTGCCTCACTGGCCAAAA-CAGA-GA-AA-GGAAGAG 416
Query 372 AAGTTTT-AGCCGAGCAGGCAAGAGAACTAATCATGTATCTTGAGAAAGAACTTGTCGGA 430
||||| | | |||||| |||||||| | || |||| ||| || |||||||| | ||||
Sbjct 417 AAGTTCTGATT-GAGCAGACAAGAGAATTGATTATGTGTCTCGAAAAAGAACTCGCCGGA 475
Query 431 AAAGATTACTTCGGTGGCAAGACTGTCGGATTCTTGGACTTTGTGGCCGGAAGTTTGATT 490
|||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 476 AAAGATTACTTCGGCGGCAAGACAGTCGGATTCTTGGACTTTGTCGCCGGAAGTATGATC 535
Query 491 CCGTTTTGTTTGGAGAGAGG-TTGGGAAGGAATAGGATTGGA-AGTGATTACAGAGGAGA 548
||||||||||||||||| || |||||||||||| ||| |||| | ||||||||||| | |
Sbjct 536 CCGTTTTGTTTGGAGAG-GGCTTGGGAAGGAATGGGAGTGGAGA-TGATTACAGAGAAAA 593
Query 549 AGTTTCCAGAAT-TCAAGAGATGGGTTAAGAATTTGGAGAAGGTTGAGATTGTTAAAGAT 607
|||||||||||| | || | |||||| ||||| || || |||||||||| ||| |||
Sbjct 594 AGTTTCCAGAATAT-AACAAATGGGTGAAGAAGCTGAAGGAGGTTGAGATCGTTGTTGAT 652
Query 608 TGTGTTCCACCAAGAGAGAAACATGTAGAACACATGAACTATATGGCAGAGAGAGTGAGA 667
||| |||| | ||||||||||||| | |||||||||||| |||||||||||| | | |||
Sbjct 653 TGTATTCCTCTAAGAGAGAAACATATTGAACACATGAACAATATGGCAGAGAAAATTAGA 712
Query 668 TCTTCTTAATT 678
||| |||||||
Sbjct 713 TCTGCTTAATT 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5