BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481866
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29500.1 | Symbols: | HSP20-like chaperones superfamily pro... 682 0.0
AT1G07400.1 | Symbols: | HSP20-like chaperones superfamily pro... 418 3e-116
AT1G59860.1 | Symbols: | HSP20-like chaperones superfamily pro... 401 3e-111
AT1G53540.1 | Symbols: | HSP20-like chaperones superfamily pro... 219 3e-56
> AT2G29500.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr2:12633091-12633805 REVERSE LENGTH=715
Length=715
Score = 682 bits (369), Expect = 0.0
Identities = 464/510 (91%), Gaps = 6/510 (1%)
Strand=Plus/Plus
Query 1 AAAATGTCGATGATTCCAAGCTTCTTCAACAACAACAGGCGTGGCAA-CAACATCTTCGA 59
|||||||||||||||||||| ||||||||||||||||| | | || ||||||||| ||
Sbjct 63 AAAATGTCGATGATTCCAAGTTTCTTCAACAACAACAGAC---G-AAGCAACATCTTTGA 118
Query 60 CCCGTTCTCACTCGACGTTTGGGATCCATTCAAAGAACTTACATCATCTTCGCTTTCACG 119
|| ||||| || ||||| |||||||||||||| ||||| |||||||| || ||||| ||
Sbjct 119 TCCATTCTCTCTTGACGTATGGGATCCATTCAAGGAACTAACATCATCATCACTTTCTCG 178
Query 120 TGAAAACTCTGCGATCGTTAACGCACGTGTGGACTGGAGAGAGACGCCGGAGGCGCACGT 179
||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 179 TGAGAACTCAGCGATCGTGAACGCACGTGTGGACTGGAGAGAGACGCCTGAGGCCCACGT 238
Query 180 GTTCAAAGCGGATTTGCCGGGATTGAAGAAAGAAGAAGTGAAAGTTGAGATTGAGGAAGA 239
||| ||||| || ||||| ||||||||||| || ||||| ||||||||||||||||| ||
Sbjct 239 GTTTAAAGCTGACTTGCCTGGATTGAAGAAGGAGGAAGTTAAAGTTGAGATTGAGGAGGA 298
Query 240 TAGTGTTTTGAAGATCAGCGGAGAGAGACACGTGGAGAAAGAAGATAAGAATGACACGTG 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TAGTGTTTTGAAGATCAGTGGAGAGAGACACGTGGAGAAAGAAGATAAGAATGACACGTG 358
Query 300 GCACCGTGTGGAGAGATCGAGTGGACAGTTTACGAGGAGGTTTAGGCTGCCGGAGAATGT 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 GCACCGTGTGGAGAGATCGAGTGGACAGTTTACGAGGAGGTTTAGGTTGCCGGAGAATGT 418
Query 360 GAAGATGGATCAAGTTAAGGCTGCTATGGAGAATGGTGTGTTGACTGTGACGGTGCCTAA 419
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 419 GAAGATGGATCAGGTTAAGGCTGCGATGGAGAATGGTGTGTTGACTGTTACGGTGCCTAA 478
Query 420 GGCTGAGACCAAGAAGGCTGATGTGAAGTCTATTCAGATCACTGGTTGAGTATTTTGGTT 479
||||||||| |||||||||||||| ||||||||||||||| ||||||||||| | ||||
Sbjct 479 GGCTGAGACTAAGAAGGCTGATGTTAAGTCTATTCAGATCTCTGGTTGAGTAATG-GGTT 537
Query 480 CGAGTTTTGTCGCCGGAGTTTCTTGTGTTT 509
|||||||| || ||||||| |||||||||
Sbjct 538 CGAGTTTTATCATCGGAGTTGCTTGTGTTT 567
> AT1G07400.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:2274943-2275758 FORWARD LENGTH=816
Length=816
Score = 418 bits (226), Expect = 3e-116
Identities = 364/428 (85%), Gaps = 19/428 (4%)
Strand=Plus/Plus
Query 3 AATGTCGATGATTCCAAGCTTCTTCAACAACAACAGGCGTGGCAACAACATCTTCGACCC 62
||||||| | ||||||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct 205 AATGTCGCTTATTCCAAGCTTCTTCGGCAACAACAGGCGAAGCAACAGCATCTTCGACCC 264
Query 63 GTTCTCACTCGACGTTTGGGATCCATTCAAAGAACTTACA-T-CA--TCTTCGCTTTCAC 118
|||||||||||||||||||||||||||||| ||||| || | | || ||||| || |
Sbjct 265 GTTCTCACTCGACGTTTGGGATCCATTCAAGGAACTG-CAATTCCCGTCGTCGCTCTC-C 322
Query 119 GTGA-AAAC-TCTGCGAT--CGTTAACGCACGTGTGGACTGGAGAGAGACGCCGGAGGCG 174
| || |||| || ||||| || ||||||||||||||||||| ||||||| ||||||||
Sbjct 323 G-GAGAAACATCGGCGATAACG--AACGCACGTGTGGACTGGAAAGAGACGGCGGAGGCG 379
Query 175 CACGTGTTCAAAGCGGATTTGCCGGG-ATTGAAGAAAGAAGAAGTGAAAGTTGAGATTGA 233
||||||||||| || ||| ||||||| || ||||||||| || || ||||| ||||| ||
Sbjct 380 CACGTGTTCAAGGCCGATCTGCCGGGGAT-GAAGAAAGAGGAGGTTAAAGTGGAGATAGA 438
Query 234 GGAAGATAGTGTTTTGAAGATCAGCGGAGAGAGACACGTGGAGAAAGAAGATAAGAATGA 293
||| || ||||| | |||||||| ||||||||||||||||||||||| || ||| | ||
Sbjct 439 GGACGACAGTGTGCTCAAGATCAGTGGAGAGAGACACGTGGAGAAAGAGGAGAAGCAGGA 498
Query 294 CACGTGGCACCGTGTGGAGAGATCGAGTGGACAGTT-TACGAGGAGGTTTAGGCTGCCGG 352
||||||||| ||||||||||| ||||| || || || | |||||| ||||| ||||||||
Sbjct 499 CACGTGGCATCGTGTGGAGAGGTCGAGCGGGCAATTCT-CGAGGAAGTTTAAGCTGCCGG 557
Query 353 AGAATGTGAAGATGGATCAAGTTAAGGCTGCTATGGAGAATGGTGTGT-TGACTGTGACG 411
|||||||||||||||||||||| |||||| | |||||||| || || | |||||||||||
Sbjct 558 AGAATGTGAAGATGGATCAAGTCAAGGCTTCCATGGAGAACGGAGT-TCTGACTGTGACG 616
Query 412 GTGCCTAA 419
||||||||
Sbjct 617 GTGCCTAA 624
> AT1G59860.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:22031413-22032132 FORWARD LENGTH=720
Length=720
Score = 401 bits (217), Expect = 3e-111
Identities = 373/445 (84%), Gaps = 23/445 (5%)
Strand=Plus/Plus
Query 1 AAAATGTCGATGATTCCAAGCTTCTTCAACAACAACAGGCG--T-GGCAACAACATCTTC 57
||||||||| ||||||||||||||||| |||||||||||| | ||||||||| |||
Sbjct 59 AAAATGTCGCTGATTCCAAGCTTCTTCGGCAACAACAGGCGAATCAACAACAACATATTC 118
Query 58 GACCCGTTCTCACTCGACGTTTGGGATCCATTCAAAGAACTTACATCATCTTCGCTTTCA 117
|| || |||||||||||||| |||||||||||||| |||||| || | ||| | |||
Sbjct 119 GATCCATTCTCACTCGACGTATGGGATCCATTCAAGGAACTT-CA--A--TTC-CCGTCA 172
Query 118 -CGTGAAAAC-TCTGCGATCGTTAACGCACGTGTGGACTGGAGAGAGACGCCGGAGGCGC 175
||| | || ||||| | |||||||||||||| |||| ||||||| |||||||||
Sbjct 173 TCGT--CTTCGTCGGCGATAGCAAACGCACGTGTGGATTGGAAAGAGACGGCGGAGGCGC 230
Query 176 ACGTGTTCAAAGCGGATTTGCC-GGGATTGAAGAAAGAAGAAGTGAAAGTTGAGATTGAG 234
|||||||||| |||||||| || |||| ||||||||||||| || ||||| |||||||||
Sbjct 231 ACGTGTTCAAGGCGGATTTACCGGGGA-TGAAGAAAGAAGAGGTTAAAGTAGAGATTGAG 289
Query 235 GAAGATAGTGT-TTTGAAGATCAGCGGAGAGAGACACGTGGAGAAAGAAGATAAGAATGA 293
|| |||||||| || ||||||||||||||||||||||| |||||||| || ||| | ||
Sbjct 290 GATGATAGTGTGCTT-AAGATCAGCGGAGAGAGACACGTTGAGAAAGAGGAGAAGCAGGA 348
Query 294 CACGTGGCACCGTGTGGAGAGATCGAGT-GGACAGTT-TACGAGGAGGTTTAGGCTGCCG 351
||||||||| ||||| |||||||||||| || | || | |||||| ||||||| | |||
Sbjct 349 CACGTGGCATCGTGTAGAGAGATCGAGTGGGGGA-TTCT-CGAGGAAGTTTAGGTTACCG 406
Query 352 GAGAATGTGAAGATGGATCAAGTTAAGGCTGCTATGGAGAATGGTGTGTTGACTGTGACG 411
|||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||
Sbjct 407 GAGAATGTGAAGATGGATCAAGTTAAAGCTTCAATGGAGAATGGTGTTTTGACTGTGACT 466
Query 412 GTGCCTAAGGCTG-AGACCAAGAAG 435
|||||||| | || |||| || |||
Sbjct 467 GTGCCTAAAG-TGGAGACTAATAAG 490
> AT1G53540.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:19980462-19981109 FORWARD LENGTH=648
Length=648
Score = 219 bits (118), Expect = 3e-56
Identities = 260/327 (80%), Gaps = 16/327 (5%)
Strand=Plus/Plus
Query 148 GTGGACTGGAGAGAGACGCCGGAGGCGCACGTGTTCAAAGCGGATTTGCCGGGATTGAAG 207
||||| ||||| ||||| || ||||||||||||||||| |||||||| |||||| ||| |
Sbjct 202 GTGGATTGGAGGGAGACACCTGAGGCGCACGTGTTCAAGGCGGATTTACCGGGACTGAGG 261
Query 208 AAAGAAGAAGTGAAAGTTGAGATTGAGGAAGATAGTGT-TTTGAAGATCAGCGGAGAGA- 265
|| ||||| |||||||| ||| ||||||| | | | || |||| || |||||||
Sbjct 262 AAGGAAGAGGTGAAAGTGGAGGTTGAGGATGGCAACATACTT-CAGATAAGTGGAGAGAG 320
Query 266 GA-CACGTGGAGAAAGAAGATAAGAATGACACGTGGCACCGTGTGGAGAGATCGAGT-GG 323
|| || | ||||| ||||| |||||||||| |||||||||||||||| | |||||| ||
Sbjct 321 GAGCA-AT-GAGAATGAAGAGAAGAATGACAAGTGGCACCGTGTGGAGCGGTCGAGTGGG 378
Query 324 ACAGTTTACGAGGAGGTTTAGGCTGCCGGAGAATG-TGAAGATGGATCAAGTTAAGGCT- 381
| |||| |||||||||||||||||||||||||||| | |||||||| || | || ||
Sbjct 379 A-AGTTCACGAGGAGGTTTAGGCTGCCGGAGAATGCT-AAGATGGAGGAAATCAAAGCCA 436
Query 382 GCTATGGAGAATGGTGTGTTGACTGTGACGGTGCCTAAGGCTG--AGACCAAGAAGGCTG 439
| |||||| |||||||||||| | || || ||||| |||| || ||| || ||| | |
Sbjct 437 G-TATGGAAAATGGTGTGTTGTCGGTTACCGTGCCCAAGG-TGCCAGAGAAA-AAGCCAG 493
Query 440 ATGTGAAGTCTATTCAGATCACTGGTT 466
| || ||||| ||| | ||| ||||||
Sbjct 494 AGGTTAAGTCCATTGATATCTCTGGTT 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5