BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481869
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29525.1 | Symbols: AtIPCS3 | Arabidopsis Inositol phosphory... 1465 0.0
> AT2G29525.1 | Symbols: AtIPCS3 | Arabidopsis Inositol phosphorylceramide
synthase 3 | chr2:12638354-12640820 FORWARD LENGTH=1208
Length=1208
Score = 1465 bits (793), Expect = 0.0
Identities = 977/1060 (92%), Gaps = 36/1060 (3%)
Strand=Plus/Plus
Query 1 TCCTTAAAAATTATTGATTTGGGAATATATTTTGTGTCAATTCAGGTGAATCAAACTGGT 60
||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1 TCCTTCAAAATTATTGATTTGGGAATATATTCT-TGTCAATTCAGGTGAATCAAACTGGT 59
Query 61 TGGT-C----C--GATT---C-CGGA--T-TGTC-----CTCG-AA---TT-TGT-TTTC 95
||| | | |||| | || | | |||| | | || || ||| ||||
Sbjct 60 CGGTGCAATTCAAGATTGCCCTCGTATTTGTGTCGGGGAAT-GAAACTGTTCTGTCTTTC 118
Query 96 TTACAAAAGCAGTTGCATTTTGATCTTTGCTACATAGATTAATGTTCATTCTCAATCTTA 155
||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||
Sbjct 119 TTACAAAAGCAGTTGCA-TTTGATC-TTGCTGCAGAGATTAATGTTCATTCTCAATCTTA 176
Query 156 ACCATGCCGGTTTACGTTGATCGCGAAGCTCCTAAGCTATGGAGACGAATTTACTCAGAA 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ACCATGCCGGTTTACGTTGATCGCGAAGCTCCTAAGCTATGGAGACGAATTTACTCAGAA 236
Query 216 GCAACATTAGAAGCTTCTCTTCTTGCTGAAAAATGGAAGCTTGTTCTTGCTGGACTTGTA 275
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GCGACATTAGAAGCTTCTCTTCTTGCTGAAAAATGGAAGCTTGTTCTTGCTGGACTTGTA 296
Query 276 TTTCAGTACATTCATGGACTTGCTGCTCATGGAGTTCACTACTTACACCGACCTGGTCCA 335
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTTCAGTACATTCATGGACTTGCTGCTCATGGAGTTCACTACTTACACCGACCTGGTCCT 356
Query 336 ACGCTTCAAGATGCCGGTTTCTTTATTCTTCCAGCGCTTGGGCAAGACAAGGCCTTTGTC 395
|| ||||||||||| |||||||||||||||||||| ||||||||||| || || ||| ||
Sbjct 357 ACTCTTCAAGATGCTGGTTTCTTTATTCTTCCAGCACTTGGGCAAGATAAAGCATTTTTC 416
Query 396 AGTGAAACTGTGTTTGTCACTATCTTTGGATCTTTTGTAATATGGACCTTTCATCCCTTT 455
|||||||||||||||||||||||||||||||| ||| | | ||||| |||||||| |||
Sbjct 417 AGTGAAACTGTGTTTGTCACTATCTTTGGATCATTTATCTTGTGGACATTTCATCCTTTT 476
Query 456 GTTTCCCACACTAAGAAA-ATTTGTACAGTTTTGATATGGTGCAGAGTTTTTGTTTATTT 514
|||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GTTTCCCACAGTAA-AAAGATTTGTACAGTTTTGATATGGTGCAGAGTTTTTGTTTATTT 535
Query 515 AGCTGCTTCTCAAAGTCTGAGGATCATCACATTCTTTGCAACACAGCTTCCTGGGCCGAA 574
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 AGCTGCTTCTCAAAGTCTGAGGATCATAACATTCTTTGCAACACAGCTTCCTGGGCCGAA 595
Query 575 TTATCATTGTCGAGAAGGCTCAAAGCTCGCCAAGATTCCGCCTCCAAAGAATGTTCTTGA 634
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 596 TTATCATTGTCGAGAAGGCTCCAAGCTCGCCAAGATTCCACCTCCAAAGAATGTTCTTGA 655
Query 635 AGTACTCTTGATCAACTTTCCTGATGGAGTGATATATGGTTGTGGAGATTTAATATTTTC 694
|||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 656 AGTACTCTTGATTAACTTTCCTGATGGAGTTATATATGGTTGTGGAGATCTGATATTTTC 715
Query 695 ATCACATACAATATTCACCTTAGTCTTTGTACGCACATATCAAAGATACGGCACACGAAG 754
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATCACATACGATATTCACCTTAGTCTTTGTACGCACATATCAAAGATACGGCACACGAAG 775
Query 755 GTGGATCAAGCATCT-GGCTTGGCTTATGGCAGTTATACAGAGCCTGTTGATTATAGCAT 813
|||||||||||| || |||||||||||||||||| ||||||||| | |||||||||||||
Sbjct 776 GTGGATCAAGCA-CTTGGCTTGGCTTATGGCAGTAATACAGAGCATATTGATTATAGCAT 834
Query 814 CAAGGAAACATTACACAGTAGACATTGTTGTTGCATGGTATACTGTGAACCTTGTGATGT 873
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 835 CAAGGAAACATTACACAGTTGACATTGTTGTTGCATGGTATACTGTGAACCTTGTAATGT 894
Query 874 TCTACGTTGACAGTAAACTGCCAGAAATGGCAGAGCGTTCTAGTGGACCTTCTCAGACGC 933
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 895 TCTACGTTGACAGTAAACTGCCAGAAATGGCAGAACGTTCTAGTGGACCTTCTCCTACGC 954
Query 934 CTTTACTTCCACTGAGCACAAAGGACGGTAA---CAAGAGCAAAGAAGACCATCAAAGAC 990
|||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||
Sbjct 955 CTTTACTTCCACTGAGCACAAAGGACAGTAAGAACAAGAGCAAAGAAGATCATCAGAGAC 1014
Query 991 TTCTAAACAAGACCAATGTAGCAGATGAGCTTTGATCTTA 1030
|||||||| ||| ||||||||||||||| | |||||||||
Sbjct 1015 TTCTAAACGAGAACAATGTAGCAGATGATCATTGATCTTA 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54065986965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5