BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481870
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29550.1 | Symbols: TUB7 | tubulin beta-7 chain | chr2:12644... 2338 0.0
AT5G62700.1 | Symbols: TUB3 | tubulin beta chain 3 | chr5:25184... 1317 0.0
AT5G62690.1 | Symbols: TUB2 | tubulin beta chain 2 | chr5:25181... 1291 0.0
AT5G23860.1 | Symbols: TUB8 | tubulin beta 8 | chr5:8042876-804... 1205 0.0
AT1G20010.1 | Symbols: TUB5 | tubulin beta-5 chain | chr1:69377... 979 0.0
> AT2G29550.1 | Symbols: TUB7 | tubulin beta-7 chain | chr2:12644047-12646037
REVERSE LENGTH=1666
Length=1666
Score = 2338 bits (1266), Expect = 0.0
Identities = 1494/1599 (93%), Gaps = 36/1599 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaaGATCctctctacttcttctttctctttttcaaaa------tctctctctct 54
|||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 3 AAAACAAAAGATCCTCTCTGCTTCTCCTTTCCCTTTTTCAAAATCTCTCTCTCTCTCTCT 62
Query 55 c--tttagatccagttttagggttttcttctctGTGAGCGAAGATGCGTGAGATTCTTCA 112
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CTTTTTAGATCCAGTTTTAGGGTTTTCTTCTCTGTGAGCGAAGATGCGTGAGATTCTTCA 122
Query 113 TATCCAAGGAGGTCAATGCGGGAACCAAATCGGTTCCAAGTTCTGGGAAGTGGTTAATCT 172
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 123 TATTCAAGGAGGTCAATGCGGAAACCAAATCGGTTCCAAGTTTTGGGAAGTGGTTAATCT 182
Query 173 CGAGCACGGGATTGATCAGACGGGAAGGTA-CCAGGGAGATTCCGATTTGCAGCTTGAGA 231
||||||||||||||||||||||||| |||| | ||||||||||| || ||||||||||
Sbjct 183 CGAGCACGGGATTGATCAGACGGGACGGTATGTA-GGAGATTCCGAGTTACAGCTTGAGA 241
Query 232 GGGTTAATGTCTACTACAACGAGGCGAGTTGTGGAAGGTATGTTCCACGTGCCGTTCTCA 291
|||||||||| ||||||||||||||||||||||||||||| ||||| || || |||||||
Sbjct 242 GGGTTAATGTATACTACAACGAGGCGAGTTGTGGAAGGTACGTTCCTCGCGCTGTTCTCA 301
Query 292 TGGATTTGGAGCCTGGAACGATGGATAGTGTTAGATCTGGTCCCTATGGTCAGATCTTTC 351
||||||||||||||||||| ||||| ||||| ||||||||||| || |||||||||||||
Sbjct 302 TGGATTTGGAGCCTGGAACCATGGACAGTGTCAGATCTGGTCCGTACGGTCAGATCTTTC 361
Query 352 GTCCGGATAATTTCGTCTTTGGTCAGTCCGGTGCTGGGAATAACTGGGCTAAAGGTCATT 411
| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 362 GACCGGATAACTTCGTCTTCGGTCAGTCCGGTGCTGGGAATAACTGGGCTAAAGGTCACT 421
Query 412 ACACTGAAGGTGCTGAGCTTATTGATTCGGTCCTTGATGTTGTTCGCAAAGAGGCTGAGA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ACACTGAAGGTGCTGAGCTTATTGATTCGGTCCTTGATGTTGTTCGCAAAGAGGCTGAGA 481
Query 472 ACTGTGACTGCCTTCAAGGGTTTCAGGTGTGCCATTCCTTAGGAGGAGGAACTGGTTCTG 531
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 482 ACTGTGACTGCCTTCAAGGATTTCAGGTGTGCCATTCCTTGGGAGGAGGAACTGGTTCTG 541
Query 532 GTATGGGAACTTTGTTGATATCGAAGATCAGGGAGGAGTACCCTGACCGTATGATGATGA 591
| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 542 GAATGGGAACTTTGTTGATATCTAAGATCAGGGAGGAGTACCCAGACCGTATGATGATGA 601
Query 592 CTTTTTCTGTGTTCCCATCGCCAAAGGTGTCTGACACTGTTGTGGAGCCATACAATGCAA 651
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 602 CTTTCTCTGTGTTCCCATCGCCTAAGGTGTCTGACACTGTTGTGGAGCCTTACAACGCAA 661
Query 652 CACTATCTGTGCACCAGCTAGTTGAGAACGCTGATGAGTGTATGGTTCTTGACAATGAAG 711
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 662 CACTATCTGTGCACCAGCTTGTTGAGAACGCTGATGAGTGTATGGTTCTTGACAACGAAG 721
Query 712 CATTGTATGACATTTGCTTCCGTACTCTCAAGCTTAGCACTCCAAGTTTTGGTGATCTGA 771
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 722 CTTTGTATGACATTTGCTTCCGTACACTCAAGCTTAGCACTCCAAGTTTTGGTGATCTGA 781
Query 772 ACCATTTGATCTCTGCAACCATGTCTGGTGTGACCTGCTGTCTTAGGTTCCCTGGTCAAC 831
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 782 ACCACTTGATCTCTGCAACCATGTCTGGTGTAACCTGCTGTCTTAGGTTCCCTGGTCAAC 841
Query 832 TGAACTCTGATCTGCGAAAGCTAGCTGTGAACCTGATCCCATTCCCTCGTCTTCACTTCT 891
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 842 TGAACTCTGATCTGCGAAAGCTAGCTGTGAATCTGATCCCATTCCCTCGTCTCCACTTCT 901
Query 892 TCATGGTGGGATTTGCTCCTCTCACCTCTCGTGGATCTCAGCAGTACCGTAACCTCACTG 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TCATGGTGGGATTTGCTCCTCTCACCTCTCGTGGATCTCAGCAGTACCGTAACCTCACTG 961
Query 952 TCCCAGAACTGACTCAGCAAATGTGGGATGCCAAGAACATGATGTGTGCTGCTGACCCAA 1011
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 962 TCCCAGAGCTCACTCAGCAAATGTGGGATGCTAAGAACATGATGTGTGCTGCTGACCCAA 1021
Query 1012 GACACGGTCGTTACCTCACTGCTTCAGCCATGTTCCGTGGCAAA-ATGAGCACCAAGGAG 1070
|||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1022 GACACGGTCGCTACCTCACTGCTTCAGCCATGTTCCGTGG-AAAGATGAGCACCAAGGAG 1080
Query 1071 GTCGATGAACAGATGCTGAATGTTCAGAACAAGAACTCCTCCTACTTTGTGGAATGGATC 1130
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1081 GTCGATGAACAGATGCTGAACGTACAGAACAAGAACTCCTCCTACTTTGTGGAATGGATC 1140
Query 1131 CCGAACAATGTCAAATCAACCGTCTGTGACATCCCCCCTACTGGTCTAAAGATGGCTTCA 1190
|| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1141 CCTAACAACGTCAAATCAACCGTCTGTGACATTCCCCCTACTGGTCTGAAGATGGCTTCA 1200
Query 1191 ACGTTCATCGGTAACTCGACATCGATTCAAGAGATGTTCAGGCGTGTCAGCGAACAATTC 1250
|||||||| |||||||| || ||||| ||||||||||||||||||||||| || ||||||
Sbjct 1201 ACGTTCATTGGTAACTCAACTTCGATCCAAGAGATGTTCAGGCGTGTCAGTGAGCAATTC 1260
Query 1251 ACTGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTACACTGGTGAAGGTATGGATGAG 1310
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1261 ACTGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTACACAGGTGAAGGTATGGATGAG 1320
Query 1311 ATGGAGTTCACTGAAGCTGAAAGCAACATGAACGATCTTGTCTCCGAGTATCAGCAGTAT 1370
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1321 ATGGAGTTCACTGAAGCTGAAAGCAACATGAACGATCTTGTCTCTGAGTATCAGCAGTAT 1380
Query 1371 CAAGATGCCACGGCTGATGAAGAAGGAGAATATGAAGACGAAGAAGCTGAGTACGAGCAA 1430
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1381 CAAGATGCAACGGCTGATGAAGAAGGAGAATATGAAGAGGAAGAAGCTGAGTACGAGCAA 1440
Query 1431 GAAGAAGGTTATTGAAGAAA-A-----------CACCTCAACTTCCTGTTGCTGTTTACT 1478
|||||| |||||||||||| | ||||||||||||| |||||||||||||
Sbjct 1441 GAAGAAACTTATTGAAGAAACAGATGATAAGAACACCTCAACTTCCAGTTGCTGTTTACT 1500
Query 1479 TT-----CT-TCTACTA--A-GTTTTTATAGTTTCTGTAACTATCGCTTGCGTTATTAGT 1529
|| || ||| ||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1501 TTTAAAACTCTCTTCTATTAAGTTCTTATAGTTTCTGTAACTATCGCTTGCGTTATTAGT 1560
Query 1530 --T-ATGATACTCTGCCTAGGCTAAGAGGATTTATCAAT 1565
| |||||||||||| ||||||||||||||||||||||
Sbjct 1561 AGTTATGATACTCTGCGTAGGCTAAGAGGATTTATCAAT 1599
> AT5G62700.1 | Symbols: TUB3 | tubulin beta chain 3 | chr5:25184397-25186711
FORWARD LENGTH=1742
Length=1742
Score = 1317 bits (713), Expect = 0.0
Identities = 1145/1356 (84%), Gaps = 19/1356 (1%)
Strand=Plus/Plus
Query 93 AAGATGCGTGAGATTCTTCATATCCAAGGAGGTCAATGCGGGAACCAAATCGGTTCCAAG 152
|||||||||||||||||||| ||||| || ||||||||||| ||||| ||||| |||||
Sbjct 102 AAGATGCGTGAGATTCTTCACATCCAGGGTGGTCAATGCGGTAACCAGATCGGAGCCAAG 161
Query 153 TTCTGGGAAGTGG-TTAATCTCGAGCACGGGATTGAT-CAGACGGGAAGGTACCA-GGGA 209
||||||||||||| || | ||||||||| || ||| || || |||||||| || |||
Sbjct 162 TTCTGGGAAGTGGTTTGCGC-CGAGCACGGCATCGATCCA-ACCGGAAGGTA-CACCGGA 218
Query 210 GATTCCGATTTGCAGCTTGAGAGGGTTAATGTCTACTACAACGAGGCGAGTTGTGGAAGG 269
|| || ||| |||| |||||| | | || || |||||||| || |||||||| || ||
Sbjct 219 GACTCAGATCTGCAACTTGAGCGCATCAACGTTTACTACAATGAAGCGAGTTGCGGTAGA 278
Query 270 TAT-GTTCCACGTGCCGTTCTCATGGATTTGGAGCCTGGAACGATGGATAGTGTTAGATC 328
| | ||||| ||||| || |||||||||||||||||||| || ||||||||| | |||||
Sbjct 279 T-TCGTTCCTCGTGCAGTGCTCATGGATTTGGAGCCTGGGACTATGGATAGTCTCAGATC 337
Query 329 TGGTCCCTATGGTCAGATCTTTCGTCCGGATAATTTCGTCTTTGGTCAGTCCGGTGCTGG 388
||| || || ||||||| |||||| || ||||| |||||||||||||| |||||||| ||
Sbjct 338 TGGACCGTACGGTCAGACCTTTCGACCTGATAACTTCGTCTTTGGTCAATCCGGTGC-GG 396
Query 389 G-AATAACTGGGCTAAAGGTCATTACACTGAAGGTGCTGAGCTTATTGATTCGGTCCTTG 447
| || |||||||| || || || ||||||||||| ||||| || || ||||| || || |
Sbjct 397 GTAACAACTGGGCCAAGGGACACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCG 456
Query 448 ATGTTGTTCGCAAAGAGGCTGAGAACTGTGACTGCCTTCAAGGGTTTCAGGTGTGCCATT 507
|||||||||| || || |||||||||||||||||||| |||||||| ||||| || || |
Sbjct 457 ATGTTGTTCGTAAGGAAGCTGAGAACTGTGACTGCCTCCAAGGGTTCCAGGTTTGTCACT 516
Query 508 CCTTAGGAGGAGGAACTGGTTCTGGTATGGGAACTTTGTTGATATCGAAGATCAGGGAGG 567
| || |||||||||||||| |||||||||||||| |||||||| || |||||| | || |
Sbjct 517 CATTGGGAGGAGGAACTGGATCTGGTATGGGAACATTGTTGATCTCTAAGATCCGTGAAG 576
Query 568 AGTACCCTGACCGTATGATGATGACTTTTTCTGTGTTCCCATCGCCAAAGGTGTCTGACA 627
||||||| || || |||||| | || || || |||||||| || |||||||| ||||| |
Sbjct 577 AGTACCCAGATCGCATGATGCTTACCTTCTCGGTGTTCCCTTCACCAAAGGTTTCTGATA 636
Query 628 CTGTTGTGGAGCCATACAATGCAACACTATCTGTGCACCAGCTAGTTGAGAACGCTGATG 687
|||| |||||||| ||||| || || ||||||| || ||||| |||||||| |||||||
Sbjct 637 CTGTGGTGGAGCCTTACAACGCTACTTTATCTGTTCATCAGCTTGTTGAGAATGCTGATG 696
Query 688 AGTGTATGGTTCTTGACAATGAAGCATTGTATGACATTTGCTTCCGTACTCTCAAGCTTA 747
|||| ||||||||||| || || || ||||| || ||||||||| | |||||||| || |
Sbjct 697 AGTGCATGGTTCTTGATAACGAGGCCTTGTACGATATTTGCTTCAGGACTCTCAAACTCA 756
Query 748 GC-ACTCCAAGTTTTGGTGATCTGAACCATTTGATCTCTGCAACCATGTCTGGTGTGACC 806
| || || || ||||||||| ||||||||||||| ||||| || ||||||||||||||
Sbjct 757 -CTACCCCCAGCTTTGGTGATTTGAACCATTTGATATCTGCCACTATGTCTGGTGTGACT 815
Query 807 TGCTGTCTTAGGTTCCCTGGTCAACTGAACTCTGATCTGCGAAAGCTAGCTGTGAACCTG 866
|||||||| ||||||||||||||||| |||||||| || || ||||| |||||||| ||
Sbjct 816 TGCTGTCTGAGGTTCCCTGGTCAACTCAACTCTGACCTCCGTAAGCTTGCTGTGAATCTC 875
Query 867 ATCCCATTCCCTCGTCTTCACTTCTTCATGGTGGGATTTGCTCCTCTCACCTCTCGTGGA 926
|||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||
Sbjct 876 ATCCCATTCCCTCGTCTTCACTTCTTCATGGTTGGTTTTGCTCCTCTCACCTCAAGAGGT 935
Query 927 TCTCAGCAGTACCG-TAACCTCACTGTCCCAGAACTGACTCAGCAAATGTGGGA-TGCCA 984
|| ||||||||||| | |||||| ||||| || || || |||||||||||||| | |||
Sbjct 936 TCACAGCAGTACCGCTC-CCTCACAGTCCCTGAGCTCACCCAGCAAATGTGGGACT-CCA 993
Query 985 AGAACATGATGTGTGCTGCTGACCCAAGACACGGTCGTTACCTCACTGCTTCAGCCATGT 1044
||||||||||||||||||| |||||||| ||||| || |||||||| || || |||||||
Sbjct 994 AGAACATGATGTGTGCTGCAGACCCAAGGCACGGACGCTACCTCACAGCCTCTGCCATGT 1053
Query 1045 TCCGTGGCAAAATGAGCACCAAGGAGGTCGATGAACAGATGCTGAATGTTCAGAACAAGA 1104
|||||||||| |||||||| ||||| || || || |||||||||||||||||||||||||
Sbjct 1054 TCCGTGGCAAGATGAGCACAAAGGAAGTTGACGAGCAGATGCTGAATGTTCAGAACAAGA 1113
Query 1105 ACTCCTCCTACTTTGTGGAATGGATCCCGAACAATGTCAAATCAACCGTCTGTGACATCC 1164
|||| |||||||||||||| |||||||| ||||| || |||||||| |||||||| ||||
Sbjct 1114 ACTCGTCCTACTTTGTGGAGTGGATCCCCAACAACGTGAAATCAACAGTCTGTGATATCC 1173
Query 1165 CCCCTACTGGTCTAAAGATGGCTTCAACGTTCATCGGTAACTCGACATCGATTCAAGAGA 1224
| ||||||||||| ||||||||||| || ||||| || ||||| |||||||| |||||||
Sbjct 1174 CACCTACTGGTCTGAAGATGGCTTCCACTTTCATTGGAAACTCAACATCGATCCAAGAGA 1233
Query 1225 TGTTCAGGCGTGTCAGCGAACAATTCACTGCTATGTTCAGGAGAAAGGCTTTCTTGCATT 1284
|||||||||| || || || || ||||| |||||||||||||| ||||||||||||||||
Sbjct 1234 TGTTCAGGCGAGTGAGTGAGCAGTTCACAGCTATGTTCAGGAGGAAGGCTTTCTTGCATT 1293
Query 1285 GGTACACTGGTGAAGGTATGGATGAGATGGAGTTCACTGAAGCTGAAAGCAACATGAACG 1344
||||||| ||||| || ||||| |||||||||||||| ||||| || |||||||||||||
Sbjct 1294 GGTACACAGGTGAGGGAATGGACGAGATGGAGTTCACAGAAGCAGAGAGCAACATGAACG 1353
Query 1345 ATCTTGTCTCCGAGTATCAGCAGTATCAAGATGCCACGGCTGATGAAGAAGGAGAATATG 1404
||||||| || ||||| ||||| || |||||||| ||||||||||||||||| || || |
Sbjct 1354 ATCTTGTGTCAGAGTACCAGCAATACCAAGATGCAACGGCTGATGAAGAAGGTGACTACG 1413
Query 1405 A--A-GACGAAGAAGCTGAGTACGAGCAAGAAGAAG 1437
| | || ||||||| ||| ||| | || |||||||
Sbjct 1414 AGGATGAGGAAGAAGGTGAATACCAACAGGAAGAAG 1449
> AT5G62690.1 | Symbols: TUB2 | tubulin beta chain 2 | chr5:25181415-25183729
FORWARD LENGTH=1726
Length=1726
Score = 1291 bits (699), Expect = 0.0
Identities = 1123/1332 (84%), Gaps = 12/1332 (1%)
Strand=Plus/Plus
Query 91 CGAAGATGCGTGAGATTCTTCATATCCAAGGAGGTCAATGCGGGAACCAAATCGGTTCCA 150
|||||||||||||||||||||| ||||| || ||||||||||| ||||| ||||| |||
Sbjct 141 CGAAGATGCGTGAGATTCTTCACATCCAGGGTGGTCAATGCGGTAACCAGATCGGCGCCA 200
Query 151 AGTTCTGGGAAGTGG-TTAATCTCGAGCACGGGATTGAT-CAGACGGGAAGGTACCA-GG 207
||||||||||||||| || | ||||||||| || ||| || || |||||||| || |
Sbjct 201 AGTTCTGGGAAGTGGTTTGCGC-CGAGCACGGCATCGATCCA-ACCGGAAGGTA-CACCG 257
Query 208 GAGATTCCGATTTGCAGCTTGAGAGGGTTAATGTCTACTACAACGAGGCGAGTTGTGGAA 267
|||| || ||| |||| |||||| | | || || |||||||| || |||||||| || |
Sbjct 258 GAGACTCAGATCTGCAACTTGAGCGCATCAACGTTTACTACAATGAAGCGAGTTGCGGTA 317
Query 268 GGTAT-GTTCCACGTGCCGTTCTCATGGATTTGGAGCCTGGAACGATGGATAGTGTTAGA 326
| | | ||||| ||||| || |||||||||||||||||||| || ||||||||| | |||
Sbjct 318 GAT-TCGTTCCTCGTGCAGTGCTCATGGATTTGGAGCCTGGGACTATGGATAGTCTCAGA 376
Query 327 TCTGGTCCCTATGGTCAGATCTTTCGTCCGGATAATTTCGTCTTTGGTCAGTCCGGTGCT 386
||||| || || ||||||| |||||| || ||||| ||||||||||| || |||||||||
Sbjct 377 TCTGGACCGTACGGTCAGACCTTTCGACCTGATAACTTCGTCTTTGGCCAATCCGGTGCT 436
Query 387 GGGAATAACTGGGCTAAAGGTCATTACACTGAAGGTGCTGAGCTTATTGATTCGGTCCTT 446
|| || |||||||| || || || ||||| ||||| ||||| || || ||||| || ||
Sbjct 437 GGTAACAACTGGGCCAAGGGACACTACACGGAAGGAGCTGAACTAATCGATTCCGTTCTC 496
Query 447 GATGTTGTTCGCAAAGAGGCTGAGAACTGTGACTGCCTTCAAGGGTTTCAGGTGTGCCAT 506
||||||||||| || || ||||||||||||||||| || |||||||| ||||| || ||
Sbjct 497 GATGTTGTTCGTAAGGAAGCTGAGAACTGTGACTGTCTCCAAGGGTTCCAGGTTTGTCAC 556
Query 507 TCCTTAGGAGGAGGAACTGGTTCTGGTATGGGAACTTTGTTGATATCGAAGATCAGGGAG 566
|| || |||||||||||||| |||||||||||||| |||||||| || |||||| | ||
Sbjct 557 TCGTTGGGAGGAGGAACTGGATCTGGTATGGGAACATTGTTGATCTCTAAGATCCGTGAA 616
Query 567 GAGTACCCTGACCGTATGATGATGACTTTTTCTGTGTTCCCATCGCCAAAGGTGTCTGAC 626
|||||||| || || |||||| | || || || |||||||| || |||||||| |||||
Sbjct 617 GAGTACCCAGATCGCATGATGCTTACCTTCTCGGTGTTCCCTTCACCAAAGGTTTCTGAT 676
Query 627 ACTGTTGTGGAGCCATACAATGCAACACTATCTGTGCACCAGCTAGTTGAGAACGCTGAT 686
||||| || ||||| ||||| || || || ||||| || ||||| |||||||| ||||||
Sbjct 677 ACTGTGGTTGAGCCTTACAACGCTACTCTGTCTGTCCATCAGCTTGTTGAGAATGCTGAT 736
Query 687 GAGTGTATGGTTCTTGACAATGAAGCATTGTATGACATTTGCTTCCGTACTCTCAAGCTT 746
||||| ||||||||||| ||||| || ||||| || ||||||||| | |||||||| ||
Sbjct 737 GAGTGCATGGTTCTTGATAATGAGGCCTTGTACGATATTTGCTTCAGGACTCTCAAACTC 796
Query 747 AGC-ACTCCAAGTTTTGGTGATCTGAACCATTTGATCTCTGCAACCATGTCTGGTGTGAC 805
| | || || || ||||||||| ||||||| ||||| ||||| || ||||||||||||||
Sbjct 797 A-CTACCCCCAGCTTTGGTGATTTGAACCACTTGATTTCTGCTACTATGTCTGGTGTGAC 855
Query 806 CTGCTGTCTTAGGTTCCCTGGTCAACTGAACTCTGATCTGCGAAAGCTAGCTGTGAACCT 865
|||||||| ||||||||||||||||| |||||||| || |||||||| |||||||| ||
Sbjct 856 TTGCTGTCTGAGGTTCCCTGGTCAACTCAACTCTGACCTCCGAAAGCTTGCTGTGAATCT 915
Query 866 GATCCCATTCCCTCGTCTTCACTTCTTCATGGTGGGATTTGCTCCTCTCACCTCTCGTGG 925
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 916 CATCCCATTCCCCCGTCTTCACTTCTTCATGGTGGGTTTTGCTCCTCTCACCTCAAGAGG 975
Query 926 ATCTCAGCAGTACCGTAACCTCACTGTCCCAGAACTGACTCAGCAAATGTGGGA-TGCCA 984
||||||||||||||| |||||| ||||| || || || |||||||||||||| | |||
Sbjct 976 TTCTCAGCAGTACCGTTCCCTCACAGTCCCTGAGCTCACCCAGCAAATGTGGGACT-CCA 1034
Query 985 AGAACATGATGTGTGCTGCTGACCCAAGACACGGTCGTTACCTCACTGCTTCAGCCATGT 1044
||||||||||||||||||| |||||||| ||||| || |||||||| || || |||||||
Sbjct 1035 AGAACATGATGTGTGCTGCAGACCCAAGGCACGGACGCTACCTCACAGCCTCTGCCATGT 1094
Query 1045 TCCGTGGCAAAATGAGCACCAAGGAGGTCGATGAACAGATGCTGAATGTTCAGAACAAGA 1104
|||||||||| |||||||| ||||| || || || |||||||||||||| ||||||||||
Sbjct 1095 TCCGTGGCAAGATGAGCACAAAGGAAGTTGACGAGCAGATGCTGAATGTGCAGAACAAGA 1154
Query 1105 ACTCCTCCTACTTTGTGGAATGGATCCCGAACAATGTCAAATCAACCGTCTGTGACATCC 1164
|||| |||||||||||||| |||||||| ||||| || ||||| || |||||||||||||
Sbjct 1155 ACTCGTCCTACTTTGTGGAGTGGATCCCCAACAACGTGAAATCGACAGTCTGTGACATCC 1214
Query 1165 CCCCTACTGGTCTAAAGATGGCTTCAACGTTCATCGGTAACTCGACATCGATTCAAGAGA 1224
| ||||||||||| |||||||| ||||| ||||| || ||||| ||||| || |||||||
Sbjct 1215 CACCTACTGGTCTGAAGATGGCATCAACTTTCATTGGAAACTCAACATCAATCCAAGAGA 1274
Query 1225 TGTTCAGGCGTGTCAGCGAACAATTCACTGCTATGTTCAGGAGAAAGGCTTTCTTGCATT 1284
|||||||||| || || || || ||||| |||||||||||||||||||||||||||||||
Sbjct 1275 TGTTCAGGCGAGTGAGTGAGCAGTTCACAGCTATGTTCAGGAGAAAGGCTTTCTTGCATT 1334
Query 1285 GGTACACTGGTGAAGGTATGGATGAGATGGAGTTCACTGAAGCTGAAAGCAACATGAACG 1344
||||||| ||||| || ||||| |||||||| ||||| ||||| || |||||||||||||
Sbjct 1335 GGTACACAGGTGAGGGAATGGACGAGATGGAATTCACAGAAGCGGAGAGCAACATGAACG 1394
Query 1345 ATCTTGTCTCCGAGTATCAGCAGTATCAAGATGCCACGGCTGATGAAGAAGGAGAATATG 1404
||||||| || ||||| ||||| || |||||||| || || ||||||||||| || || |
Sbjct 1395 ATCTTGTGTCAGAGTACCAGCAATACCAAGATGCAACTGCGGATGAAGAAGGTGACTACG 1454
Query 1405 AAGACGAAGAAG 1416
| || || ||||
Sbjct 1455 AGGATGAGGAAG 1466
> AT5G23860.1 | Symbols: TUB8 | tubulin beta 8 | chr5:8042876-8044819
FORWARD LENGTH=1727
Length=1727
Score = 1205 bits (652), Expect = 0.0
Identities = 1114/1338 (83%), Gaps = 28/1338 (2%)
Strand=Plus/Plus
Query 93 AAGATGCGTGAGATTCTTCATATCCAAGGAGGTCAATGCGGGAACCAAATCGGTTCCAAG 152
|||||||| ||||||||||| || ||||| || |||||||| ||||| ||||| | |||
Sbjct 84 AAGATGCGAGAGATTCTTCACATACAAGGTGGCCAATGCGGAAACCAGATCGGAGCTAAG 143
Query 153 TTCTGGGAAGT-GGTTAATCTCGAGCACGGGATTGA-TCAGACGGGAAGGTACCAGGGAG 210
||||||||||| | || | |||||||||||| || || ||||||||| ||||| ||||
Sbjct 144 TTCTGGGAAGTAGTTTGCGC-CGAGCACGGGATCGATTC-GACGGGAAGATACCAAGGAG 201
Query 211 ATTCCGATTTGCAGCTTGAGA-GGGTTAATGTCTACTACAACGAGGCGAGTTGTGGAAGG 269
| ||||||||| || || | | || ||||||||||||||||| |||||||| |||||
Sbjct 202 AGAACGATTTGCAACTCGA-ACGAGTCAATGTCTACTACAACGAAGCGAGTTGCGGAAGA 260
Query 270 TAT-GTTCCACGTGCCGTTCTCATGGATTTGGAGCCTGGAACGATGGATAGTGTTAGATC 328
| | || ||||| ||||| ||||||||| | |||||||| || ||||||||||| |||||
Sbjct 261 T-TCGTCCCACGCGCCGTCCTCATGGATCTAGAGCCTGGTACTATGGATAGTGTCAGATC 319
Query 329 TGGTCCCTATGGTCAGATCTTTCGTCCGGATAATTTCGTCTTTGGTCAGTCCGGTGCTGG 388
||||| || ||||||||||| ||||| ||||| ||||| |||||||| |||||||| ||
Sbjct 320 CGGTCCGTACGGTCAGATCTTCCGTCCTGATAACTTCGTATTTGGTCAATCCGGTGCCGG 379
Query 389 GAATAACTGGGCTAAAGGTCATTACACTGAAGGTGCTGAGCTTATTGATTCGGTCCTTGA 448
|| || ||||||||||| || ||||||||||||||||||||||| ||||| || || ||
Sbjct 380 TAACAATTGGGCTAAAGGACACTACACTGAAGGTGCTGAGCTTATCGATTCCGTTCTCGA 439
Query 449 TGTTGTTCGCAAAGAGGCTGAGAACTGTGACTGCCTT-CAAGGGTTTCAGGTGTGCCATT 507
||||||||| || || |||||||| |||||||| ||| ||||| || || ||||| || |
Sbjct 440 TGTTGTTCGTAAGGAAGCTGAGAATTGTGACTG-CTTGCAAGGATTCCAAGTGTGTCACT 498
Query 508 CCTTAGGAGGAGGAACTGGTTCTGGTATGGGAACTTTGTTGATATCGAAGATCAGGGAGG 567
| ||||||||||||||||| ||||| |||||||| |||||||| || ||||| ||||| |
Sbjct 499 CATTAGGAGGAGGAACTGGATCTGGAATGGGAACGTTGTTGATTTCAAAGATTAGGGAAG 558
Query 568 AGTACCCTGACCGTATGATGATGACTTTTTCTGTGTTCCCATCGCC-AAAGGTGTCTGAC 626
|||| || || | |||||| |||| |||||||| |||||||| || ||| ||||| |||
Sbjct 559 AGTATCCAGATAGGATGATGCTGACGTTTTCTGTATTCCCATCACCGAAA-GTGTCAGAC 617
Query 627 ACTGTTGTGGAGCCATACAATGCAACACTATCTGTGCACCAGCTAGTTGAGAACGCTGAT 686
|||||||| ||||| || |||||||| || ||||| || ||||| || ||||| || |||
Sbjct 618 ACTGTTGTTGAGCCTTATAATGCAACTCTCTCTGTTCATCAGCTTGTGGAGAATGCAGAT 677
Query 687 GAGTGTATGGTTCTTGACAATGAAGCAT-TGTATGACATTTGCTTCCGTACTCTCAAGCT 745
|||||||||||||||||||||||||| | | ||||||||||||||| | ||||| |||||
Sbjct 678 GAGTGTATGGTTCTTGACAATGAAGC-TCTCTATGACATTTGCTTCAGAACTCTTAAGCT 736
Query 746 TAGCACTCCAAGTTTTGGTGATCT-GAACCATTTGATCTCTGCAACCATGTCTGGTGTGA 804
| ||||||||| ||||| || || ||| || | ||||||||||||||| |||||| |
Sbjct 737 CACCACTCCAAGCTTTGGAGA-CTTGAATCACCTCATCTCTGCAACCATGAGTGGTGTCA 795
Query 805 CCTGCTGTCTTAGGTTCCCTGGTCAACTGAACTCTGATCTGCGAAAGCTAGCTGTGAACC 864
| ||||| ||| | ||||| ||||| || |||||||| ||||| ||||| || |||||
Sbjct 796 CTTGCTGCCTTCGTTTCCCGGGTCAGCTAAACTCTGACCTGCGCAAGCTTGCAGTGAATT 855
Query 865 TGATCCCATTCCCTCGTCTTCACTTCTTCATGGT-GGGATTTGCTCCTCTCACCTCTCGT 923
| ||||||||||||||||| |||||||||||||| ||| ||||| || ||||| ||||||
Sbjct 856 TAATCCCATTCCCTCGTCTCCACTTCTTCATGGTTGGG-TTTGCACCACTCACATCTCGT 914
Query 924 GGATCTCAGCAGTACCGTAACCTCA-CTGTCCCAGAACTGACTCAGCAAATGTGGGATGC 982
||||| ||||| ||| | | ||| | | ||||| || || ||||| || |||||||||||
Sbjct 915 GGATCACAGCAATACAG-AGCCTTAACCGTCCCTGAGCTCACTCAACAGATGTGGGATGC 973
Query 983 CAAGAACATGATGTGTGCTGCTGACCCAAGACACGGTC-GTTACCTCACTGCTTCAGCCA 1041
|||||| ||||||||||| ||||| ||| | ||||| | | ||| | || || |||||||
Sbjct 974 CAAGAATATGATGTGTGCAGCTGATCCACGCCACGG-CAGGTACTTGACAGCCTCAGCCA 1032
Query 1042 TGTTCCGTGGCAAAATGAGCACCAAGGAGGTCGATGAACAGATGCTGAATGTTCAGAACA 1101
||||| | |||||||||||||| || || || || ||||||||| | || ||||||||||
Sbjct 1033 TGTTCAGAGGCAAAATGAGCACGAAAGAAGTTGACGAACAGATGATCAACGTTCAGAACA 1092
Query 1102 AGAACTCCTCCTACTTTGTGGAATGGATCCCGAACAATGTCAAATCAACCGTCTGTGACA 1161
||||||| || |||||||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct 1093 AGAACTCGTCATACTTTGTGGAATGGATCCCAAACAACGTGAAATCAACCGTGTGTGACA 1152
Query 1162 TCCCCCCTACTGGTCT-AAAGATGGCTTCAACGTTCATCGGTAACTCGACATCGATTCAA 1220
| || || || ||||| ||| |||||||| || |||||||| |||||||||||||| ||
Sbjct 1153 TTCCACCAACAGGTCTGAAA-ATGGCTTCGACTTTCATCGGGAACTCGACATCGATCCAG 1211
Query 1221 GAGATGTTCAGGCGTGTCAGCGAACAATTCACTGCTATGTTCAGGAGAAAGGCTTTCTTG 1280
|||||||| |||||||| |||||||| ||||| || |||||||| ||||| |||||||||
Sbjct 1212 GAGATGTTTAGGCGTGTGAGCGAACAGTTCACAGCGATGTTCAGAAGAAAAGCTTTCTTG 1271
Query 1281 CATTGGTACACTGGTGAAGGTATGGATGAGATGGAGTTCACTGAAGCTGAAAGCAACATG 1340
||||||||||| |||||||| ||||| |||||||||||||| || || || |||||||||
Sbjct 1272 CATTGGTACACAGGTGAAGGAATGGACGAGATGGAGTTCACAGAGGCAGAGAGCAACATG 1331
Query 1341 AACGATCTTG-TCTCCGAGTATCAGCAGTATCAAGATGCCACGGCTGATGAAGAAGGAGA 1399
|| ||| ||| | || |||||||| ||||| ||||| || ||||||||||| |||| ||
Sbjct 1332 AATGAT-TTGGTATCAGAGTATCAACAGTACCAAGACGCAACGGCTGATGAGGAAGAAGG 1390
Query 1400 ATATGAAG-ACGAAGAAG 1416
||||| | | |||||||
Sbjct 1391 GTATGA-GTATGAAGAAG 1407
> AT1G20010.1 | Symbols: TUB5 | tubulin beta-5 chain | chr1:6937795-6940582
REVERSE LENGTH=1689
Length=1689
Score = 979 bits (530), Expect = 0.0
Identities = 1081/1343 (80%), Gaps = 53/1343 (4%)
Strand=Plus/Plus
Query 102 GAGATTCTTCATATCCAAGGAGGTCAATGCGGGAACCAAATCGGTTCCAAGTTCTGGGAA 161
||||| ||||| || ||||| ||||||||||| ||||| || ||||||||||||||||||
Sbjct 108 GAGATCCTTCACATTCAAGGTGGTCAATGCGGTAACCAGATTGGTTCCAAGTTCTGGGAA 167
Query 162 GTGGTTAAT-C-TCGAGCACGGGATTGA-TCAGACGGGAAGGTACCAG-GGAG--A-TTC 214
|| | | | ||||||||| || || || || ||| | || ||| |||| | | |
Sbjct 168 GT-CAT-CTGCGACGAGCACGGCATCGATTC-CACCGGACGTTA-CAGTGGAGACACTGC 223
Query 215 CGATTTGCAGCTTGAGAGGGT-T-AATGTCTACTACAACGAGGC--GAGTTGTGGAAGGT 270
||| | |||||||| | || | |||||||| ||||| || || || ||||||| |
Sbjct 224 AGATCTCCAGCTTGA-A-CGTATCAATGTCTATTACAATGAAGCTTCAG--GTGGAAGAT 279
Query 271 ATGTTCCACGTGCCGTTCTCATGGAT-TTGGAGCCTGGAACGATGGATAGTGTTAGATCT 329
| ||||| ||||| ||||| |||||| || |||||||| || ||||||||| | |||||
Sbjct 280 ACGTTCCTCGTGCTGTTCTTATGGATCTT-GAGCCTGGTACTATGGATAGTATCAGATCC 338
Query 330 GGTCCCTATGGTCAGATCTTTCGTCCGGATAA-TTTCGTCTTTGGTCAGTCCGGTGCTGG 388
|| || | |||||||||||| ||||| ||||| ||| |||||||||||||| ||||||||
Sbjct 339 GGACCGTTTGGTCAGATCTTCCGTCCTGATAACTTT-GTCTTTGGTCAGTCTGGTGCTGG 397
Query 389 GAATAACTGGGCTAAAGGTCATTACACTGAAGGTGCTGAGCTTATTGATTCGGTCCTTGA 448
||||| |||||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct 398 TAATAATTGGGCTAAAGGTCATTACACTGAAGGTGCTGAACTTATTGATGCTGTTCTTGA 457
Query 449 TGTTGTTCGCAAAGAGGCTGAGAACTGTGACTGCCTTCAAGGGTTTCAGGTGTGCCATTC 508
||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 458 TGTTGTTCGTAAAGAAGCTGAGAACTGCGATTGCCTTCAAGGGTTTCAGGTGTGCCATTC 517
Query 509 CTTAGGAGGAGGAACTGGTTCTGGTATGGGAACTTTGTTGATATCGAAGATCAGGGAGGA 568
|| |||||||| || ||||| || |||||||| | ||||||||||||||| | |||||
Sbjct 518 GTTGGGAGGAGGCACAGGTTCAGGAATGGGAACACTATTGATATCGAAGATCCGAGAGGA 577
Query 569 GTACCCTGACCGTATGATGATGACTTTTTCTGTGTTCCCATCGCC-AAAGGTGTCTGACA 627
||| || ||| | |||||| | ||||| ||||| |||||||| || |||| | |||||||
Sbjct 578 GTATCCAGACAGAATGATGCTCACTTTCTCTGTTTTCCCATCTCCTAAAG-TCTCTGACA 636
Query 628 CTGTTGTGGAGCCATACAATGCAACACTATCTGTGCACCAGCTAGTTGAGAACGCTGATG 687
| || || ||||| ||||||||||| || ||||| || ||||| || |||||||||||||
Sbjct 637 CAGTCGTTGAGCCTTACAATGCAACTCTCTCTGTCCATCAGCTTGTAGAGAACGCTGATG 696
Query 688 AGTGTATGGTTCTTGACAATGAAGCAT-TGTATGACATTTGCTTCCGTACTCTCAAGCTT 746
| || ||||| || ||||||||||| | | || || || ||||||||||| ||||| ||
Sbjct 697 AATGCATGGTCCTCGACAATGAAGC-TCTCTACGATATCTGCTTCCGTACCCTCAAACTC 755
Query 747 AGCACTCCAAGTTTTGGTGATCT-GAACCATTTGATCTCTGCAACCATGT-CTGGTGTGA 804
|||||||| || ||||| || || ||||||||||||||| ||||| ||| | |||||||
Sbjct 756 AGCACTCCTAGCTTTGGAGA-CTTGAACCATTTGATCTCCGCAACAATGAGC-GGTGTGA 813
Query 805 CCTGCTGTCTTA-GGTTCCCTGGTCAACTGAACTCTGATCTGC-G-AAAGCTAGCTGTGA 861
| |||| |||| ||||||| || ||||| |||||||| || | | ||| || || ||||
Sbjct 814 CTTGCTC-CTTAAGGTTCCCCGGACAACTAAACTCTGACCT-CAGGAAA-CTCGCGGTGA 870
Query 862 ACCTGATCCCATTCCCTCGTCTTCACTTCTTCATGGTGGGATTTGCTCCTCTCACCTCTC 921
|||| ||||||||||||||||| || |||||||||||||| ||||| || ||||| || |
Sbjct 871 ACCTAATCCCATTCCCTCGTCTCCATTTCTTCATGGTGGGTTTTGCGCCCCTCACTTCCC 930
Query 922 GTGGATCTCAGCAGTAC--CGTAACCTCACTGTCCCAGAACTGACTCAGCAAATGTGGGA 979
|||| || || || ||| | | || |||| || || || |||||||| |||||||||||
Sbjct 931 GTGGCTCGCAACAATACATC-TCAC-TCACCGTTCCTGAGCTGACTCAACAAATGTGGGA 988
Query 980 -TGCCAAGAACATGATGTGTGCTGCTGACCCAAGACACGGTCGTTACCTCACTGCTTCAG 1038
| |||| |||||||||||||| ||||| ||| | ||||| ||||||||||| || || |
Sbjct 989 CT-CCAAAAACATGATGTGTGCAGCTGATCCACGTCACGGACGTTACCTCACAGCCTCTG 1047
Query 1039 CCATGTTCCGTGG-CAAAATGAGCACCAAGGAGGTCGATGAACAGATGCTGAATGTTCAG 1097
| || ||| | || || | ||||||| || || ||||| || || || || || | |||
Sbjct 1048 CTATTTTCAGAGGACAGA-TGAGCACAAAAGAAGTCGACGAGCAAATCCTAAACATACAG 1106
Query 1098 AACAAGAACTCCTCCTACTTTGTGGAATGGATCCCGAACAATGTCAAATCAACCGTCTGT 1157
||||||||||| || ||||| || || |||||||| ||||| || ||||| | ||| |||
Sbjct 1107 AACAAGAACTCGTCTTACTTCGTTGAGTGGATCCCAAACAACGTGAAATCCAGCGTTTGT 1166
Query 1158 GACATCCCCCCTACTGGTCT-AAAGATGGCTTCAACGTTCATCGGTAACTCGACATCGAT 1216
|| ||||| || | || || ||| ||||| | ||||| | ||||||||||| |||||
Sbjct 1167 GATATCCCACCAAAGGGGCTCAAA-ATGGCGGCGACGTTTGTGGGTAACTCGACGTCGAT 1225
Query 1217 TCAAGAGATGTTCAGGCGTGTCAGCGAACAATTCACTGCTATGTTCAGGAG-AAAG-GCT 1274
|||||| ||||||||| | || || || || ||||| |||||||| ||| | |||| | |
Sbjct 1226 TCAAGAAATGTTCAGGAGAGTGAGTGAGCAGTTCACGGCTATGTTTAGGCGTAAAGCG-T 1284
Query 1275 TTCTTGCATTGGTACACTGGTGAAGGTATGGATGAGATGGAGTTCACTGAAGCTGAAAGC 1334
|||| |||||||||||| || ||||| ||||| || |||||||| || |||||||| |||
Sbjct 1285 TTCT-GCATTGGTACACAGGAGAAGGAATGGACGAAATGGAGTTTACGGAAGCTGAGAGC 1343
Query 1335 AACATGAACGATCTTG-TCTCCGAGTATCAGCAGTATCAAGATGCCACGGCTGATGAAGA 1393
|| ||||| ||| ||| || | || || || ||||| |||||||| || |||||||| ||
Sbjct 1344 AATATGAATGAT-TTGGTCGCTGAATACCAACAGTACCAAGATGCTACTGCTGATGAGGA 1402
Query 1394 AGGAGAATATGAAGACGAAGAAG 1416
||| || ||||| | |||||||
Sbjct 1403 AGGTGAGTATGATGTTGAAGAAG 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77258638755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5