BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481872
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29570.1 | Symbols: PCNA2, ATPCNA2 | proliferating cell nucl... 1676 0.0
AT1G07370.1 | Symbols: PCNA1, ATPCNA1 | proliferating cellular ... 859 0.0
> AT2G29570.1 | Symbols: PCNA2, ATPCNA2 | proliferating cell nuclear
antigen 2 | chr2:12649906-12651703 REVERSE LENGTH=1133
Length=1133
Score = 1676 bits (907), Expect = 0.0
Identities = 1054/1125 (94%), Gaps = 10/1125 (1%)
Strand=Plus/Plus
Query 1 ACAATTGCAATCTCCTCTCAGAAATTTCAAGAACCCTAAAAAACCCTAACCG-TTCAATT 59
||||||||||||||||| |||||||||||| | | || |||||||||||||| ||| |||
Sbjct 15 ACAATTGCAATCTCCTCCCAGAAATTTCAACAGCTCT-AAAAACCCTAACCGTTTCGATT 73
Query 60 CACACTCTAAGCTTTCGATAATTTCCCAGAAGATGTTGGAGCTTCGTTTAGTTCAAGGTT 119
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 CACACTCTAACCTTTCGATAATTTCCCAGAAGATGTTGGAGCTTCGTTTAGTTCAAGGTT 133
Query 120 CTCTACTAAAGAAGGTTCTAGAAGCGGTCAAAGATCTTGTGAACGATGCGAACTTCGACT 179
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 134 CTCTACTGAAGAAGGTTCTAGAAGCGGTCAAAGATCTGGTGAACGATGCGAACTTCGACT 193
Query 180 GTTCAAGCACAGGGTTCTCGCTTCAAGCTATGGATTCGAGTCACGTCGCGTTGGTGTCTC 239
|||| | ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 194 GTTCGACCACAGGGTTCTCGCTTCAAGCTATGGATTCGAGCCATGTCGCGTTGGTGTCTC 253
Query 240 TTTTGCTTAGATCTGAAGGTTTTGAGCATTATAGGTGCGATAGGAATCTTTCCATGGGGA 299
|||||||||||||||||||||| ||||| ||||| ||||||||||| || || ||||| |
Sbjct 254 TTTTGCTTAGATCTGAAGGTTTCGAGCACTATAGATGCGATAGGAACCTCTCTATGGGAA 313
Query 300 TGAATCTTGGTAACATGTCTAAGATGCTGAAATGTGCTGGAAATGATGATATCATCACTA 359
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 314 TGAATCTTGGTAATATGTCTAAGATGCTGAAATGTGCTGGAAATGATGATATCATCACCA 373
Query 360 TCAAGGCTGATGATGGTAGCGACACTGTGACGTTCATGTTTGAGAGTCCCACGCAAGACA 419
|||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 374 TCAAAGCTGATGATGGTAGCGACACTGTTACTTTCATGTTTGAGAGTCCCACACAAGACA 433
Query 420 AGATTGCTGACTTTGAGATGAAGCTGATGGATATTGACAGTGAGCATTTAGGAATACCTG 479
||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 434 AGATTGCAGATTTTGAGATGAAGCTGATGGATATCGACAGTGAGCATTTAGGAATTCCTG 493
Query 480 ATGCTGAGTACCACTCAATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAG 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 ATGCTGAGTACCACTCGATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAG 553
Query 540 ATCTCAGTAGTATTGGTGATACAGTTGTGATCTCTGTGACCAAAGAAGGGGTCAAGTTTT 599
|||||||||| |||||||| |||||||||||||| || || ||||||||||| |||||||
Sbjct 554 ATCTCAGTAGCATTGGTGACACAGTTGTGATCTCGGTAACAAAAGAAGGGGTGAAGTTTT 613
Query 600 CAACAGCAGGTGATATCGGGACAGCAAACATTGTACTCAGGCAGAATACTACTGTCGACA 659
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 614 CAACAGCAGGTGATATCGGGACAGCAAACATTGTGCTCAGGCAGAATACTACCGTCGACA 673
Query 660 AACCTGAAGATGCTATTGTGATAGAGATGAACGAGCCTGTTTCGCTTTCATTTGCATTGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AACCTGAAGATGCTATTGTGATAGAGATGAACGAGCCTGTTTCGCTTTCATTTGCATTGA 733
Query 720 GGTACATGAACTCCTTCACAAAGGCTACTCCATTGTCGGAAACTGTGACGATCAGTTTGT 779
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 734 GGTACATGAACTCCTTCACAAAGGCTACTCCATTGTCGGAAACTGTGACCATCAGTTTGT 793
Query 780 CCTCTGAGTTACCGGTTGTGGTGGAGTACAAGGTTGCTGAGATGGGTTACATTCGATACT 839
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 794 CCTCTGAGTTACCGGTCGTGGTGGAGTACAAGGTGGCTGAGATGGGTTACATTCGATACT 853
Query 840 ATCTGGCGCCTAAGATTGAAGAAGAAGAAGACACTAAGCCCTAATAATGATGAATGTTTT 899
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 854 ATCTGGCGCCTAAGATTGAAGAAGAAGAAGACACCAAACCAGAATAATGATGAATGTTTG 913
Query 900 TTAGTTTTCGTTTAAGTCCTTTTGTTGAAATGTCTGTCTTGATTCAGTTGTTTTCTGGAT 959
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 914 ATAGTCTTCGTTCGAGTCCTTT-GTTGAAATGTCTGTCTTGATTCAGTTGTTTTCTGGAT 972
Query 960 TTACTATGTTAAGGCAACGGTAAACTAGATAATCAAATG-TCAGTTTGTCTTAT-TGCAA 1017
||||||| ||||||||| | |||||||||||||| ||| | ||||||||| | || ||
Sbjct 973 TTACTATCTTAAGGCAATGCTAAACTAGATAATCGTATGAT--GTTTGTCTT-TCTGAAA 1029
Query 1018 TTTGAAAAAGCTTGTT-ATAACTCTATTCATCTGTTTGTTAGAAGATTGAAGAAAAAGAA 1076
|||| ||||||||||| ||||| || ||||||||||||||| || |||||||||||||||
Sbjct 1030 TTTGGAAAAGCTTGTTTATAACACTTTTCATCTGTTTGTTA-AACATTGAAGAAAAAGAA 1088
Query 1077 GACACAAAGCCCTAAAACACGTTTGTTTGTGGCTTCTGCAACCTC 1121
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GACACGAAGCCCTAAAACACGTTTGTTTGTGGCTTCTGCAACCTC 1133
> AT1G07370.1 | Symbols: PCNA1, ATPCNA1 | proliferating cellular
nuclear antigen 1 | chr1:2263140-2264551 FORWARD LENGTH=1025
Length=1025
Score = 859 bits (465), Expect = 0.0
Identities = 690/800 (86%), Gaps = 9/800 (1%)
Strand=Plus/Plus
Query 88 GAAGATGTTGGAGCTTCGT-TTAGTTCAAGGTTC-TCTACTAAAGAAGGTTCTAGAAGCG 145
||| ||||||||||| ||| || ||||| || || | | | ||||||||||||||| |
Sbjct 62 GAA-ATGTTGGAGCTACGTCTT-GTTCAGGGCTCGT-TGTTGAAGAAGGTTCTAGAATCA 118
Query 146 GTCAAAGATCTTGTGAACGATGCGAACTTCGACTGTTCAAGCACAGGGTTCTCGCTTCAA 205
|||||||||| |||||||||||||| |||||||| || ||||| |||||||| || |||
Sbjct 119 ATCAAAGATCTGGTGAACGATGCGAATTTCGACTGCTCCAGCACTGGGTTCTCACTCCAA 178
Query 206 GCTATGGATTCGAGTCACGTCGCGT-TGGTGTCTCTTTTGCTTAGATCTGAAGGTTTTGA 264
|||||||||||||||||||| || | |||||||||| ||||| ||||| ||||| || ||
Sbjct 179 GCTATGGATTCGAGTCACGTTGC-TCTGGTGTCTCTCTTGCTAAGATCCGAAGGCTTCGA 237
Query 265 GCATTATAGGTGCGATAGGAATCTTTCCATGGGGATGAATCTTGGTAACATGTCTAAGAT 324
|| || || ||||| |||||||| ||||||||||||||||| || |||||||| |||||
Sbjct 238 ACACTACAGATGCGACAGGAATCTCTCCATGGGGATGAATCTCGGCAACATGTCGAAGAT 297
Query 325 GCTGAAATGTGCTGGAAATGATGATATCATCACTATCAAGGCTGATGATGGTAGCGACAC 384
||| ||||| || ||||||||||| |||||||| |||||||||||||| || |||||||
Sbjct 298 GCTCAAATGCGCCGGAAATGATGACATCATCACCATCAAGGCTGATGACGGCGGCGACAC 357
Query 385 TGTGACGTTCATGTTTGAGAGTCCCACGCAAGACAAGATTGCTGACTTTGAGATGAAGCT 444
|| || |||||||||||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct 358 CGTTACCTTCATGTTTGAGAGCCCCACGCAAGACAAGATTGCTGATTTTGAGATGAAGTT 417
Query 445 GATGGATATTGACAGTGAGCATTTAGGAATACCTGATGCTGAGTACCACTCAATTGTGAG 504
||||||||| |||||||| ||| | ||||||||||||||||||||||||||||| |||||
Sbjct 418 GATGGATATAGACAGTGAACATCTGGGAATACCTGATGCTGAGTACCACTCAATCGTGAG 477
Query 505 AATGCCTTCTGGTGAATTTTCCAGGATATGCAAAGATCTCAGTAGTATTGGTGATACAGT 564
|||||||| ||| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 478 GATGCCTTCCAATGAGTTTTCCAGGATTTGCAAAGATCTCAGTAGCATTGGTGACACAGT 537
Query 565 TGTGATCTCTGTGACCAAAGAAGGGGTCAAGTTTTCAACAGCAGGTGATATCGGGACAGC 624
||||||||||||||| |||||||| || |||||||| || || ||||| || || || ||
Sbjct 538 TGTGATCTCTGTGACTAAAGAAGGCGTGAAGTTTTCTACTGCCGGTGACATTGGAACCGC 597
Query 625 AAACATTGTACTCAGGCAGAATACTACTGTCGACAAACCTGAAGATGCTATTGTGATAGA 684
|||||||| ||||||||||| || ||||| ||||| || |||||||| |||||||||||
Sbjct 598 TAACATTGTGCTCAGGCAGAACACAACTGTAGACAAGCCGGAAGATGCAATTGTGATAGA 657
Query 685 GATGAACGAGCCTGTTTCGCTTTCATTTGCATTGAGGTACATGAACTCCTTCACAAAGGC 744
|||||| ||||| || || || |||||||| ||||||||||||| ||||||||||||||
Sbjct 658 GATGAAGGAGCCAGTGTCTCTCTCATTTGCCCTGAGGTACATGAATTCCTTCACAAAGGC 717
Query 745 TACTCCATTGTCGGAAACTGTGACGATCAGTTTGTCCTCTGAGTTACCGGTTGTGGTGGA 804
||||||||||| || || ||||| ||||| || || || ||||| || || || |||||
Sbjct 718 AACTCCATTGTCAGACACAGTGACAATCAGCTTATCGTCGGAGTTGCCAGTGGTTGTGGA 777
Query 805 GTACAAGGTTGCTGAGATGGGTTACATTCGATACTATC-TGGCGCCTAAGATTGAAGAAG 863
||| |||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||
Sbjct 778 GTATAAGGTTGCTGAGATGGGTTACATTCGTTACTA-CTTGGCTCCTAAGATTGAAGAAG 836
Query 864 AAGAAGACACTAAGCCCTAA 883
||||||||||||| ||||||
Sbjct 837 AAGAAGACACTAATCCCTAA 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54969596775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5