BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481877
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29640.1 | Symbols: JOSL | JOSEPHIN-like protein | chr2:1267... 837 0.0
> AT2G29640.1 | Symbols: JOSL | JOSEPHIN-like protein | chr2:12671206-12673300
FORWARD LENGTH=1083
Length=1083
Score = 837 bits (453), Expect = 0.0
Identities = 480/493 (97%), Gaps = 2/493 (0%)
Strand=Plus/Plus
Query 5 CTAAGATCTATCACGAACGACAACGATTACAATTTTGCCTCTTGCACTCCCTCAACAATC 64
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 17 CTAAAATCTATCACGAACGACAACGATTACAATTTTGCCTCTTGCACTGCCTCAACAATC 76
Query 65 TATTTCAGGAAAAAGACGCATTCACTAAAGAAAGCTTGAACTCAATCGCAGAGAAGCTCG 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TATTTCAGGACAAAGACGCATTCACTAAAGAAAGCTTGAACTCAATCGCAGAGAAGCTCG 136
Query 125 TGGA-CGATGATCCAAACAAAGAAACATGGACACCTCTCTCTTTCCTCCTCAAGCCTCAC 183
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 137 -AGACCAATGATCCAAACAAAGAAACATGGACACCTCTCTCTTTCGTCCTCAAGCCTCAC 195
Query 184 CACAATACACTCACTGGTAACTACGACGTAAACGTGATGATTAAAGCTCTTGAAGGAAAA 243
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 196 CACAATACAATCACTGGTAACTACGACGTAAACGTGATGATTACAGCTCTTGAAGGAAAA 255
Query 244 GGCAAGAGTGTTGTTTGGCATGATAAGCGTAGTGGAGCTTCTTTGATTGATCTTGATGAT 303
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 256 GGCAAGAGTGTTGTTTGGCATGATAAGCGTATTGGAGCTTCTTCGATTGATCTTGATGAT 315
Query 304 GCAGATACTTTAATGGGTATTGTGTTGAATGTTCCTGTTAAGAGATATGGTGGACTTTGG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GCAGATACTTTAATGGGTATTGTGTTGAATGTTCCTGTTAAGAGATATGGTGGACTTTGG 375
Query 364 AGAAGTAGGCATTGGGTTGTGGTTAGAAAAATCAATGGTGTTTGGTATAATTTGGATAGT 423
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 376 AGAAGTAGGCATTGGGTTGTTGTTAGAAAAATCAATGGTGTTTGGTATAATTTGGATAGT 435
Query 424 GATCTCGTTGTGCCGCAGCTGTTTAGAGATGATGATGAAGTTAGAGGGTTCTTGGATCAA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GATCTCGTTGTGCCGCAGCTGTTTAGAGATGATGATGAAGTTAGAGGGTTCTTGGATCAA 495
Query 484 AATCTGAGTTTAG 496
|||||||||||||
Sbjct 496 AATCTGAGTTTAG 508
Score = 656 bits (355), Expect = 0.0
Identities = 410/435 (94%), Gaps = 9/435 (2%)
Strand=Plus/Plus
Query 727 CCTGAAGTCTCAAGTAAGGTATCAGCAATTTATAAAGCTACAGGAACAAAACGGTTCAAT 786
||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 655 CCTCAAGTCTCAAGTAAGGTATCTGCAATATATAAAGCTACAGGAACAAAACGGTTCAAT 714
Query 787 GCAAACACTAGGCCAGTAACTCCTGGTAAGCAATCCTCAGTCAAGGGACCATATGGTAAG 846
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 715 GCAAACACTAGACCAGTAACTCCTGGTAAGCAATCCTCAGTCAAGGGACCATATTATAAG 774
Query 847 AATCCGGGATGCACAACAAGCTGTGGTTTGAGGCTACCCAGGAAAACGGAATGCACAGCA 906
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 775 AATCCGGGATGCACAACAAGCTGTGGTTTGAGGCTACCGAGGAAAACGGAATGCACAGCA 834
Query 907 GCAAGACTGATCAAACATCTCAGCTATAAATTCGTTTTGGGCTTACGTCTGGTGGTGATG 966
||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 835 GCAAGACTGATCAAAGATCTCAGCTGTAAATTCGTTATGGGCTTACGTCTGGTGGTGATG 894
Query 967 AGgaagaagaagaagaagaagagaTCTCCACCATTCAAGAAGGCTTCTTCTTCTGGTATA 1026
||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||
Sbjct 895 AGGAAGAAGAAGAAGAAGA-GA--TCTCCACCATTGAAGAAGGCTTCTTCTTCTGGGATA 951
Query 1027 TCTCAGCCTTCGGTCATCTCTGTCGTTAATGATAATAATCACAGATCAGACG-CAATAGA 1085
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 952 TCTCAGCCTTCAGTCATCTCTGTCGTTAATGATAATAATCACAGATCAG-CGGCAATAGA 1010
Query 1086 AGACTGCATACAATTCATAAACTCCTCTTCCTCTTTCACAAGATCAAGTTCTGACA-GTG 1144
||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||
Sbjct 1011 AGACTGCATACAATTCATAAACTCCTCTTCCTCCTTCACAAGATCAAATTCT-ACCTGTG 1069
Query 1145 GGC-GTAAATCTTAA 1158
| | |||||||||||
Sbjct 1070 G-CAGTAAATCTTAA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5