BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481880
Length=1881
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29650.1 | Symbols: ANTR1, PHT4;1 | phosphate transporter 4;... 3051 0.0
> AT2G29650.1 | Symbols: ANTR1, PHT4;1 | phosphate transporter
4;1 | chr2:12673383-12676049 REVERSE LENGTH=1887
Length=1887
Score = 3051 bits (1652), Expect = 0.0
Identities = 1806/1882 (96%), Gaps = 4/1882 (0%)
Strand=Plus/Plus
Query 1 aaaaaacagagaagaagaagaaaaaaTCTATATCCGCCATGAACGCGAGAGCTCTTCTTT 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 9 AAAAAACAGAGAAGAAGAAGAAAAAATCTATCTCCGCCATGAACGCGAGAGCTCTTCTTT 68
Query 61 GCTCTCCAAATCTTCACTCTCTCTACACTTCAAATCGTCCACCTGAAAAACCCTCTTCTT 120
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 69 GCTCTTCAAATATTCACTCTCTCTACACTTCAAATCGTCCACCTGAAAAAACCTCTTCTT 128
Query 121 CTCGCAGCCTCCGGAATCTCAAACCAGCTCCAAATTCGTTACGGGTATGGATCTACCCGC 180
||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 129 CTCGCAGCCTCCGTAATCTCAAACCATCTCCAAAGTCGTTACGGGTATGGATCTACCCGC 188
Query 181 GAAATAGGTCCGGCGTTTTCCGGGTATTAGTTCGGAGCTCCGACAAAAGAGAAAGCAGTA 240
||||||||||| | |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 189 GAAATAGGTCCAGTGTTTTCCGGGTATTAGTTCGGAGCTCCGACAAGAGTGAAAGCAGTA 248
Query 241 ATTCGTATTACGTAGATGGAGAGAGAGTAAATAGAAACAACGACGTCGTTTCTGATTCGC 300
|||||||||||||||| ||||| | ||||| | ||||||| |||||||||||||||||||
Sbjct 249 ATTCGTATTACGTAGAAGGAGATAAAGTAAGTGGAAACAATGACGTCGTTTCTGATTCGC 308
Query 301 CTAGCTCGATCGTCGTCCCATGGTGGGAAGAGTTTCCGAAGCGGTGGGTGATTGTGCTT- 359
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 309 CTAGCTCTATCGTCCTCCCATGGTGGGAAGAGTTTCCGAAGCGGTGGGTGATTGTG-TTA 367
Query 360 CTCTGTTTCTCAGCTTTTCTTCTATGCAATATGGACAGAGTGAATATGAGTATAGCAATA 419
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 368 CTCTGTTTCTCAGCTTTTCTTCTCTGCAATATGGACAGAGTGAATATGAGTATAGCTATA 427
Query 420 CTTCCGATGTCGGCTGAGTATGGTTGGAATCCAGCAACAGTTGGTCTGATTCAATCTTCT 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 428 CTTCCGATGTCAGCTGAGTATGGTTGGAATCCAGCAACAGTTGGTCTGATTCAGTCTTCT 487
Query 480 TTCTTTTGGGGTTACCTTCTTACACAGATAGCTGGTGGGATATGGGCAGACACTGTAGGT 539
||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 488 TTCTTCTGGGGTTACCTTCTTACACAGATAGCTGGTGGAATTTGGGCAGACACTGTAGGA 547
Query 540 GGGAAAAGGGTTCTTGGATTCGGTGTTATCTGGTGGTCAATCGCCACGATTCTCACTCCG 599
||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 548 GGGAAAAGGGTTCTTGGATTCGGTGTTATTTGGTGGTCAATCGCTACAATTCTCACTCCT 607
Query 600 GTAGCTGCTAAACTCGGTCTTCCGTACTTGCTCGTTGTTCGTGCTTTCATGGGAGTTGGA 659
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 608 GTAGCTGCTAAACTCGGTCTTCCTTACTTGCTCGTTGTTCGTGCTTTCATGGGAGTTGGA 667
Query 660 GAGGGTGTTGCAATGCCTGCTATGAATAATATATTGTCGAAGTGGGTGCCCGTGCAAGAG 719
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 668 GAGGGTGTTGCAATGCCTGCTATGAATAATATATTGTCGAAGTGGGTTCCTGTGCAAGAG 727
Query 720 AGAAGCAGATCACTCGCGCTTGTTTACAGCGGAATGTACCTTGGATCCGTCACCGGTTTA 779
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 728 AGAAGCAGATCACTCGCGCTTGTTTACAGCGGAATGTACCTTGGATCTGTCACCGGTTTA 787
Query 780 GCCTTTTCGCCTTTCTTGATTCATCAATTTGGATGGCCCTCTGTGTTTTACTCTTTTGGG 839
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 788 GCCTTTTCGCCTTTCTTGATTCATCAATTTGGATGGCCTTCTGTGTTTTATTCTTTCGGG 847
Query 840 TCTCTTGGAACTGTATGGTTGACTCTGTGGCTGACTAAGGCAGAGAGTTCACCATTAGAA 899
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 848 TCTCTTGGAACTGTATGGTTGACTCTGTGGCTAACTAAGGCAGAGAGTTCACCATTAGAA 907
Query 900 GATCCAACATTGCTCCCTGAAGAAAGAAAGCTAATTGCAGACAACTGTGCCAGCAAAGAG 959
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 908 GATCCAACATTGCTCCCTGAAGAAAGAAAGCTAATTGCAGACAACTGTGCTAGCAAAGAG 967
Query 960 CCAGTGAAGTCGATCCCGTGGAGGCTGATATTGTCGAAACCACCGGTTTGGGCTCTCATC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 CCAGTGAAGTCGATCCCGTGGAGGCTGATATTGTCGAAACCACCGGTTTGGGCTCTCATC 1027
Query 1020 AGTTGCCACTTTTGTCACAACTGGGGAACATTCATTCTCTTAACCTGGATGCCAACTTAT 1079
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1028 AGTTGCCACTTTTGTCACAACTGGGGAACATTCATTCTCTTAACATGGATGCCAACTTAT 1087
Query 1080 TACCATCAAGTGCTGAAGTTCAACCTAATGGAATCAGGGCTTCTCTCTGTATTTCCATGG 1139
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1088 TACCATCAAGTGCTGAAGTTCAACCTTATGGAGTCAGGACTTCTCTCTGTATTTCCATGG 1147
Query 1140 ATGACAATGGCGATATCTGCAAATGCTGGTGGATGGATTGCCGATACACTTGTCAGCCGA 1199
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1148 ATGACAATGGCAATATCTGCAAATGCCGGTGGATGGATTGCCGATACACTTGTCAGCCGA 1207
Query 1200 GGTTTCTCTGTCACGAATGTCCGCAAGATAATGCAAACAATTGGGTTTCTTGGACCAGCG 1259
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1208 GGTTTCTCTGTCACGAATGTCCGCAAGATAATGCAAACAATAGGGTTTCTTGGACCAGCG 1267
Query 1260 TTCTTCCTAACACAGCTGAAACACATAGATTCTCCAACAATGGCTGTTTTGTGCATGGCT 1319
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1268 TTCTTCCTAACACAGCTGAAACACATAGATTCTCCTACAATGGCTGTTTTGTGCATGGCT 1327
Query 1320 TGTAGCCAGGGTACTGATGCGTTTTCACAGTCTGGTCTATACTCTAACCATCAAGATATT 1379
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1328 TGTAGTCAGGGGACTGATGCGTTTTCACAGTCTGGTCTATACTCTAACCATCAAGACATC 1387
Query 1380 GCTCCAAGATACTCTGGAGTGTTACTTGGTTTGTCTAATACTGCTGGAGTACTTGCCGGA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 GCTCCAAGATACTCTGGAGTGTTACTTGGTTTGTCTAATACTGCTGGAGTACTTGCCGGA 1447
Query 1440 GTTCTTGGCACAGCTGCCACTGGTCACATACTACAACACGGTTCTTGGGATGACGTTTTC 1499
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 GTTCTTGGCACAGCTGCGACTGGTCACATACTACAACACGGTTCTTGGGATGACGTTTTC 1507
Query 1500 ACAATTTCGGTCGGTCTTTACCTTGTTGGGACCGTCGTTTGGAACCTATTTTCAACTGGA 1559
|| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 1508 ACGATTTCGGTCGGTCTTTACCTCGTTGGGACCGTCATTTGGAACCTATTTTCAACCGGA 1567
Query 1560 GAGAAGATAATCGATTGATCCATTCCGAGAATAGTGAATAGTTCAGCTCGAAGACCTCTC 1619
||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 1568 GAGAAGATAATCGATTGATCCATTCCGAGAATAGTAAATAGTTCGGCTCCAAGACCTCTC 1627
Query 1620 ATCAGGTGAAACTTCACCTCACGCCAGACTCTGATTATACACGTATCATTGCAGTCTGAG 1679
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1628 ATCAGGTGCAACTTCACCTCACGCCAGTCTCTGATTATACAAGTATCATTGCAGTCTGAG 1687
Query 1680 AGCTTGCCGGAATATTCCTTTTTTGCCAGAAAATTCTTCAGGATCTTTCTGCTCGTTGAT 1739
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 AGCTAGCCGGAATATTCCTTTTTTGCCAGAAAATTCTTCAGGATCTTTCTGCTCGTTGAT 1747
Query 1740 TTAGGCCAAACTCATATGAATAATACTTTGTAGATGAAAGATATACACAGATGATTTTTT 1799
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1748 TTAGGCCAAACGCATATGAATAATACTTTGTAGATGAAAGATATACA--GATGATTTTTT 1805
Query 1800 GTACATAATCAAAGCTCACACTTTCTCACGATTACTCAAAATCACTATTCAGCTCtatat 1859
||| |||| ||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 1806 GTAAATAAACAAAGCTCACACTTTCTCAAGATTACTCAAAATCTCTCTTCAGCTCTATAT 1865
Query 1860 atatttatatcatatagatatT 1881
|||||| ||||||| |||||||
Sbjct 1866 ATATTTGTATCATAAAGATATT 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93122010975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5