BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481881
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29660.1 | Symbols: | zinc finger (C2H2 type) family protei... 2237 0.0
> AT2G29660.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr2:12678890-12680667 FORWARD LENGTH=1778
Length=1778
Score = 2237 bits (1211), Expect = 0.0
Identities = 1493/1618 (92%), Gaps = 63/1618 (4%)
Strand=Plus/Plus
Query 63 CGTACACTCACTCATATGCACACACACGAACCAATGCATCGGTAAGATTCGCataaacat 122
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 144 CGTACACTCACTCATATG--CACACACGAACCAATGCATCGGTAAGATTCGCATAAACAT 201
Query 123 ac--aaaatagcagttaaacagtaaacaaacaaaaataaaattaaagtgaggagacaaat 180
|| ||||||| || | || | ||||| |||| | |||| ||||||||||||||||||
Sbjct 202 ACAAAAAATAGGAG-T-AA-A-TAAAC---CAAATA-AAAACTAAAGTGAGGAGACAAAT 253
Query 181 attctaaca-aaataaaaag-acat-aaaataGCGTCACACCTACTCTTTCTTCTTCTAC 237
||||||||| ||| ||| || | || ||||||||||||||||||||| | |||||||||
Sbjct 254 ATTCTAACACAAA-AAATAGAAAATAAAAATAGCGTCACACCTACTC--T-TTCTTCTAC 309
Query 238 CTTTAGTATCTCCCTCCTGTCTTCATACTCCTTTACACTCCTCTCCTTCTTCTTTACACC 297
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CTTTAGTATCTATCTCCTGTCTTCATACTCCTTTACACTCCTCTCCTTCTTCTTTACACC 369
Query 298 TCTCCAATGGTGGAATCTCCCATTCACTAA--------------CT-T-TC--TCTC--T 337
||||||||||| |||||| |||||||||| || | || |||| |
Sbjct 370 TCTCCAATGGTAAAATCTCTCATTCACTAACTTTCTCTGCTTCTCTCTATCTTTCTCTGT 429
Query 338 GCATACCTATTCCAAAG--TCTCATCAATGGCGGCTCGAAAACTCGGTTCGTTGTTACGT 395
||||||| | || |||| ||||||||||||||||||||||||| || ||||||||||||
Sbjct 430 GCATACCAACTCTAAAGTCTCTCATCAATGGCGGCTCGAAAACTAGGGTCGTTGTTACGT 489
Query 396 CAATACTTTTTCTCTCTATGCTTCCTCTTCCTCGGTTGCTTCTTCTTCCCTAAA-ACCGC 454
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 490 CAATACTTTTTCTCTCTATGCTTCCTCTTCCTCGGTTGCTTCTTCTTCCCTAAAGA-CGC 548
Query 455 AGACCATAAACAAAAGAGGAAG-AAGAAGAAACTTAGAACAGTTTCTTCATCTTCTTCTG 513
|||| |||||||||||| |||| |||||||| ||||||| |||||| | ||||||||||
Sbjct 549 AGACTATAAACAAAAGA-GAAGAAAGAAGAAGCTTAGAAGAGTTTC-T--TCTTCTTCTG 604
Query 514 GTTCAGCTTTATCATCTTCTTGGACGTATTTAAAACGAGTTTTCTTATCCACGACAAGGA 573
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GTTCATCTCTATCCTCTTCTTGGACGTATTTAAAACGAGTTTTCTTATCCACGACAAGGA 664
Query 574 TATCTAAATCCCGTAACCAAACACACCCTAACGCAACTTTAACATCCGCAAGATCATCTC 633
|||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 665 TATCCAAATCCCGTAACCAAACACATCCTAACGTTACTTTAACATCCGCAAGATCATCTC 724
Query 634 AAAACTCACTCGTCACTCTCGTCCAACCCGATTCAACAAACCAACCCGACCCGGAAACCC 693
||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct 725 AAAACTCCCTCGTCACTCTCGTCCAACCCGATACCACAAACCAACCCGACCCGGAAACAC 784
Query 694 ATATTCAACAACAAACCGAATTCGAGATTTCCT-GT--GGCGAGATTTTCCATTGTAACT 750
|||||| || ||||||||||||||||| |||| | | ||||||||||| ||||||||
Sbjct 785 GTATTCATCAGCAAACCGAATTCGAGATCTCCTCTTCCGACGAGATTTTCCCTTGTAACT 844
Query 751 CGTGTGGCGAGATTTTCCCCAGAATCAATCTCCTCGAAAACCACATCGCGATCAAACACG 810
||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||
Sbjct 845 CGTGTGGCGAGATTTTCCCAAAAATCAATCTCCTCGAGAATCACATCGCGATCAAACACG 904
Query 811 CCGTATCGGAGCTAATCGCCGGCGAATCAAGCACGAACATCGTTAAAATCATATTCAAAT 870
|||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 905 CCGTGTCGGAGCTAATCGCCGGAGAATCAAGCACGAACATCGTCAAGATCATATTCAAAT 964
Query 871 CTGGTTGGCCGGAGCAAGGTAATCACAAATCTCCGGTGATCAATCGAATCTTAAAAATCC 930
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 965 CTGGTTGGCCGGAGCAAGGTAATTACAAATCTCCGGTGATCAATCGAATCTTAAAAATCC 1024
Query 931 ACAACAG-TCAAAAGATTCTCACCAGATTCGAAGAGTATCGTGAGTTCGTCAAAGCTAAA 989
||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1025 ACAACAGTTC-AAAGATTCTCACCAGATTCGAAGAGTATCGTGAGTTCGTGAAAGCTAAA 1083
Query 990 GCCGCTCGTAGCAACGGCGGTGGAAGACGGTGGGACGATGAGCGTTGCGTCGCCGACGGG 1049
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1084 GCCGCTCGTAGCAACGGCGGTGGAAGACGGTGGGACGATGAACGTTGCGTCGCCGACGGA 1143
Query 1050 AACGAGCTTTTACGATTTTACTGCTCGACGTTTATGTGTGATCTAGGGCAAAACGGTAAA 1109
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1144 AACGAACTTTTACGATTTTACTGCTCGACGTTTATGTGTGATTTAGGGCAAAACGGTAAA 1203
Query 1110 TCAAATCTCTGTGGTCATCAGTATTGTAGCATCTGTGGGATCATCGGATCTGGATTCTCG 1169
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1204 TCAAATCTCTGTGGTCATCAGTATTGTAGTATCTGTGGTATCATCGGATCTGGATTCTCG 1263
Query 1170 CCGAAGCTCGACGGAATCGCGACGTTGGCGACGGGATGGAGAGGACACGTGGCGGTACCG 1229
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1264 CCGAAGCTCGACGGGATCGCGACGTTGGCGACGGGGTGGAGAGGACACGTGGCGGTTCCG 1323
Query 1230 GAGGAGGTTGAAGAAGAGTTTGGGTTTATGAATGTGAAACGGGCCATGTTGGTTTGTCGG 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GAGGAGGTTGAAGAAGAGTTTGGGTTTATGAATGTGAAACGGGCCATGTTGGTTTGTCGG 1383
Query 1290 GTCGTAGCGGGTCGGGTCGGGTGTGATTTGATGGATGATGATGACGTGGAAAAGAGTGAT 1349
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1384 GTTGTAGCGGGTCGGGTCGGGTGTGATTTGATTGATGATGATGACGTGGATAAGAGTGAT 1443
Query 1350 GGTGGAGGGTATGATTCTCTGGTTGGGCAGAGTGGGAACAAGAGTGGGGCTCTTTTGAGG 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1444 GGTGGAGGGTATGATTCTCTGGTTGGGCAGAGTGGGAACAAGAGTGGGGCTCTGTTGAGG 1503
Query 1410 ATCGACGATGATGAGCTTTTGGTTTTTAATCCAAGGGCTGTGCTTCCttgttttgttatt 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ATCGACGATGATGAGCTTTTGGTTTTTAATCCAAGGGCTGTGCTTCCTTGTTTTGTTATT 1563
Query 1470 gtgtatactgtgtaaccggttttgtgatcctgtgtgttttttgtttatattttgttACAA 1529
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1564 GTGTATACTGTGTAACCGGATTTGTGATCCTGTGTGTTTTT-GTTTATATTTTGTTACAA 1622
Query 1530 TTGTGAAGTGTGAAACGCTT-AGGTTTGTTTGGAAATGTGGTAAAATCTTTGTGGTGAGT 1588
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1623 TTGTGAAGTGTGAAACGCTTTAGGTTTGTTTGGAAAA-TGGTAAAATCTTTGTGGTGAGT 1681
Query 1589 TTCCATATGATCTAGGTACATTTTGAGAGGTTATGTGACTAAAGA-TTGAAAGATAGT 1645
| |||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 1682 ----A-ATGATCTAGGTACAGTTTGAGAGGTTATGTGACTAAAGAGTT-AAAGATAGT 1733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81274682355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5