BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481882
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1851 0.0
> AT2G29670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:12681958-12685087 REVERSE LENGTH=2149
Length=2149
Score = 1851 bits (1002), Expect = 0.0
Identities = 1281/1409 (91%), Gaps = 45/1409 (3%)
Strand=Plus/Plus
Query 636 AATTCAATCGAGCCACCATGGCATGAGATGGTTCATTTGTCGAGTATTGAAATGAAAGCA 695
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 587 AATTCAATCGAGCCGCCATGGAACGAGATGGTTCATTTGTCGAGTATTGAAATGAAAGCA 646
Query 696 AACAGTGTTGATCTTCCTCTTTCAATTCGGATCATAAAGAAGAAACGACAATGGGAAGAA 755
|||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||||
Sbjct 647 AACAGTGTTGATCTTCCTCTTTCACTTCGTATTATAAAGAAGAAACGTCAATGGGAAGAA 706
Query 756 GGAGTTAAACAAGCCGGTGAATCAGCGTGTTGCTCGATGAATAAAGCTTTTTCGTCAATG 815
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 707 GGAGTTAAACAAGCTGGTGAATCTGCGTGTTGCTCGATGAATAAAGCTTTTTCTTCAATG 766
Query 816 GTGTTTATGATTCGAGAGCTTCAGAGCTTTACTCTGCATATGAGAGAGATTCTGTTTTAC 875
||||||||||| || |||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 767 GTGTTTATGATACGGGAGCTTCAGAGCTTTACTTTACATATGAGAGAGATTCTGTTCTAC 826
Query 876 GAAGATTTGCAAGGGATTTTGCTAAGAGTTAGAGAAGAGATGCAACAATCTTTCGTTTGG 935
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GAAGACTTGCAAGAGATTTTGCTAAGAGTTAGAGAAGAGATGCAACAATCTTTCGTTTGG 886
Query 936 TTGTTTCAACGAGTTTTCTCTGCTACTCCTACGTTGATGGTTTATGTTATGATACTCTTA 995
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 887 TTGTTTCAACAAGTTTTCTCTGCTACTCCTACGTTGATGGTTTATGTTATGATTCTCTTA 946
Query 996 GCCAATTTCACGGTTTATTCGATTGGTAGCAACAACTCCGCTTTAG-C-C----GCTCCT 1049
||||||||||| |||||||| || |||| ||||| ||||||||||| | | ||||||
Sbjct 947 GCCAATTTCACTGTTTATTCTATCGGTAACAACAGCTCCGCTTTAGCCGCTGTTGCTCCT 1006
Query 1050 CTTCCTCCGACGATTACAGAGTTAACGAC---TAGTGAAACTGATGAAACGAACGTGAAG 1106
||||||||||||||||| |||||||| || ||||||||| || ||||| |||||||||
Sbjct 1007 CTTCCTCCGACGATTACGGAGTTAACAACTGTTAGTGAAACAGAGGAAACAAACGTGAAG 1066
Query 1107 TTTGATTCCTCGATGGTGAAAACGTTCTTTGTATCGTCTTCTAGTGGGAGTACAACTTCA 1166
|||||||||||| |||||||||||||||||||||| ||| |||||||||||| | |||||
Sbjct 1067 TTTGATTCCTCGGTGGTGAAAACGTTCTTTGTATCATCTCCTAGTGGGAGTATAGCTTCA 1126
Query 1167 GTTGGTGGTAACAACAATGGCGGCGGTGGAAACATTC--GTCCGGTTTTAAGTGGAACAG 1224
||||||||||||||||||||||||||||||||| || | ||||| ||||| ||||| |
Sbjct 1127 GTTGGTGGTAACAACAATGGCGGCGGTGGAAAC-GTCAAG-CCGGTGTTAAGCGGAACTG 1184
Query 1225 ATGGTGATGGATTCGATGGATCAGAACAGTTTAGAACAGTAATACCCGAAGGAGTTTCTC 1284
| |||||||||| |||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 1185 ACGGTGATGGATCCGATGGATCAGAACAGTTCAGAACAATCATACCCGAAGGAGTTTCTC 1244
Query 1285 AATTGTCATCGTCGACTTTCGGGTCAACGACTACAGAGTCAGAGCCGTCAGTATCGGGAC 1344
|||||||||| |||| || | || | |||||||||||||||||||||||
Sbjct 1245 AATTGTCATCATCGA-ATT----T---CG------G-GTCAGAGCCGTCAGTATCGGGAC 1289
Query 1345 AAGATGAACATAGACTGTGGAATTCAATGGTGGAGGAAGCAGAACGAATGCAGTATTCAA 1404
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1290 AAGATGAACATAGATTGTGGAATTCGATGGTGGAGGAAGCAGAACGAATGCAGTATTCAA 1349
Query 1405 ATATTGATGGCTCGTTGGATCAAGAGACTAGGAAGCGGTTTGTGTCTCATGTGGAAGCTC 1464
||||||| | ||||||||||| ||||| ||||||||||| ||||||||||| || ||||
Sbjct 1350 ATATTGACGATTCGTTGGATCAGGAGACGAGGAAGCGGTTCGTGTCTCATGTAGAGGCTC 1409
Query 1465 GAGTAGAAGCAGAGGAAGACACGGGTTACTTCAAAACAGAGCTTATGTACCAAACAGGAC 1524
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||
Sbjct 1410 GAGTAGAAGCAGAGGAAGACACTGGTTACTTCAAAACAGAGCTAATGTATCAAACAGAAC 1469
Query 1525 TGTCTCAAGAGCCTAATAATCCTCT-CTTGCTCGCTAACTATGCTCAGTTCCTTTACCTC 1583
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 1470 TGTCTCAAGAGCCTAATAATCCTCTAC-TACTCGCTAACTATGCTCAGTTCCTTTACCTC 1528
Query 1584 GTCTCTAATGACCATGACAGAGCGGAAGAGTACTTCAAAAGAGCGGTAGGAGTGGAACCA 1643
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1529 GTCTCTAATGACCATGACAGAGCGGAAGAGTATTTCAAGAGAGCGGTAGGAGTGGAACCG 1588
Query 1644 AAAGACGCAGAGGCGCTTAGCAAATATGCGACGTTCTTATGGAGAGCACGGGACGATCTT 1703
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 AAAGATGCAGAGGCGTTTAGCAAATATGCGACGTTCTTATGGAGAGCACGGGACGATCTT 1648
Query 1704 TGGGCGGCTGAGGAGACTTTCTTGGAAGCAATCGATGCTGATCCGACCAACTCTTACTAT 1763
||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 1649 TGGGCGGCTGAGGAGACTTTCTTAGAAGCAATTGATGCCGATCCGACCAACTCTTACTAC 1708
Query 1764 GCTGCTAATTACGCCAATTTCTTGTGGAATACTGGCGGTGACGACACGTGTTTCCCTCTT 1823
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1709 GCCGCTAATTACGCCAATTTCTTGTGGAATACCGGCGGTGATGACACGTGTTTCCCTCTT 1768
Query 1824 GACGACGAGTCTCATGAAGACACCATATAGATAAGA-TGGTGCAACATCAAAGTTTCTCT 1882
|| ||||||||||||||||||||||| ||||||||| || |||| ||||||||| |||||
Sbjct 1769 GATGACGAGTCTCATGAAGACACCATTTAGATAAGAATG-TGCACCATCAAAGTCTCTCT 1827
Query 1883 ATATAAAATTTTGTATACAACAAATTACAACTAATGAATATACTCATATGTGCATACTGC 1942
||||||||| |||||||||| || | ||||||||||||||||| ||||||||||||| |
Sbjct 1828 ATATAAAATATTGTATACAATAAGT-ACAACTAATGAATATACACATATGTGCATAC--C 1884
Query 1943 ATACCATATTATGTATTATGTA-ATGCATGTTTGTCACCAAGGATCGGTGGGTAAAAGAG 2001
|| || |||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1885 AT----TA--ATGTATTATGTATATGCATGTTTGTCACCAAGGCTCGGTGGGTAAAAGAG 1938
Query 2002 TTA-ATTAAATCCTTATAGTTGCGATCAG 2029
||| || || | ||||| |||||||||||
Sbjct 1939 TTATAT-AA-TACTTATGGTTGCGATCAG 1965
Score = 776 bits (420), Expect = 0.0
Identities = 551/613 (90%), Gaps = 14/613 (2%)
Strand=Plus/Plus
Query 1 CGCGTTCTACTAAAAT-AAAGTGAAGCGCCTTTCCTCAGGATTTTCCCGAGAAAGTTTCT 59
|||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1 CGCGTTCTACTAAAATAAAAGTGAAGCGCC-TTCCTCAGGATTTTCCCGAGTGAGTTTCG 59
Query 60 TTTTCCTCCGAGAAAATTGCAGACGTAAATTTTCATGAATTGTGGTTCTTATAGGGAGAA 119
||||||||||||||||| ||||| ||||||||| ||| ||| ||| ||||||
Sbjct 60 CTTTCCTCCGAGAAAATTTCAGACTTAAATTTTCCGGAA-------TCTAATAAGGAGAA 112
Query 120 GCCATTGTTGAAGAAACTAGTCTCTGTGTTTTGAATCTTCAAATTCAGATTCGATCTCTA 179
||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 113 GCCATTGTTGAAGAAACTAGTCTCTCTGTTTCGAATCTTCAAATTCAGATTCAATATCTA 172
Query 180 TCAGGAAAATTTCGCATGGGGGTGAAAGTAGCTTCTTCATCTCCGTTCCTTCAATGGACG 239
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 173 TCAGGAAAATTTCGCATGGGGGTGAAAGTAGCTTCTTCGTCTACTTTCCTTCAATGGACT 232
Query 240 AATCAGCGTCTCGTTCATCAATCTTCTTCACCTTCTCAAACCCTAGCTTCCGGAGCCATA 299
| ||||| | | ||||||| ||||||||||| ||||||||||||||||| ||| |||||
Sbjct 233 ACTCAGCCTATTATTCATCAGTCTTCTTCACCATCTCAAACCCTAGCTTCGGGAACCATA 292
Query 300 ACATCTCCTTCAAAACGACGTAGCACAGTACACGAAGGACGGTTTATATCATGTCGTTTC 359
||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 293 ACATCTCCTTCAAAACGACGTAGCACAGTACACGACGGCCGGTTTCTATCATGTCGTTTC 352
Query 360 GTGCCACAGAGACTGAACCGTTCAGCTCTTTTCGGAACTCCGTCGACGAAGCTTCACCG- 418
||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 353 GTGACACAGAGACTAAACCGTTCGGCTCTTTTCGGAACTCCGTCGACGAAGCTTCATCGA 412
Query 419 CTCCAAATCCTGTGAGCTATGGGAatcatcatcatcatcatcTAGACCGATCAAAACTAA 478
| |||| || |||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 413 C-CCAAGTCATGTGAGCTATGGAAATCATCATCATCATCATCTAGACCGATCAAAACTCA 471
Query 479 GTCAATTCGAAGAGTTTATAGCGCAAACTTAGATCCATTCTCCGACGAAGAGTTTTCaaa 538
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 472 GTCGTTTCGAAGAGTTTATAGCGCAAACTTAGATCCATTCTCCGACGAAGAGTTCTCGAA 531
Query 539 aaaaaTCCAAGAGCTAACTCTCAGATTCAGTGTCCCAAACCAAGACGACGACGAGAGAAA 598
||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||| |
Sbjct 532 AAAAATCCAAGAGCTAACTCTCAGATTCAATATCCCACACCATGACGACGACGAGA-ATT 590
Query 599 CAATTCAGAGCCG 611
|||| | ||||||
Sbjct 591 CAAT-C-GAGCCG 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106625957580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5