BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481886
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29700.1 | Symbols: ATPH1, PH1 | pleckstrin homologue 1 | ch... 1009 0.0
> AT2G29700.1 | Symbols: ATPH1, PH1 | pleckstrin homologue 1 |
chr2:12697420-12698167 FORWARD LENGTH=748
Length=748
Score = 1009 bits (546), Expect = 0.0
Identities = 609/637 (96%), Gaps = 13/637 (2%)
Strand=Plus/Plus
Query 76 AGACGAACAAGTCGTGGTGAGATTTTAGGAAGAC---GAAGATGGAGAGTATCTGGCGAA 132
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 111 AGACGAACAAGTCGTGGTGAGATTTTAGGAAGACGAAGAAGATGGAGAGTATCTGGCGAA 170
Query 133 TCGCGACGGGCCAAGATCCGAACCGTGAAGATTACGAAGGGATCGAGTTCTGGTCAAACC 192
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 171 TCGCGACGGGACAAGATCCGAGCCGTGAAGATTACGAAGGGATCGAGTTCTGGTCAAACC 230
Query 193 CTGAGCGTTCTGGTTGGCTCACAAAGCAAGGCGATTACATCAAAACCTGGCGTCGTCGTT 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CTGAGCGTTCTGGTTGGCTCACAAAGCAAGGCGATTACATCAAAACCTGGCGTCGTCGTT 290
Query 253 GGTTCGTTCTCAAACGAGGGAAGCTTCTCTGGTTCAAAGATCAAGCCGCTGCTGGAATTC 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GGTTCGTTCTCAAACGAGGGAAGCTTCTCTGGTTCAAAGATCAAGCCGCTGCTGGAATTC 350
Query 313 GTGGATCTACACCGCGTGGTGTGATCTCCGTTGGTGATTGTCTCACCGTGAAAGGAGCTG 372
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GTGGATCTACGCCGCGTGGTGTGATCTCCGTTGGTGATTGTCTCACCGTGAAAGGAGCTG 410
Query 373 AGGATGTTGTGAATAAGCCTTTTGCTTTTGAGCTATCTAGTGGTAGCTATACCATGTTCT 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AGGATGTTGTGAATAAGCCTTTTGCTTTTGAGCTATCTAGTGGTAGCTATACCATGTTCT 470
Query 433 TCATTGCTGATAACGAGAAGGAGAAAGAAGAGTGGATTAATTCGATTGGAAGGTCGATTG 492
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 471 TCATTGCTGATAATGAGAAGGAGAAAGAAGAGTGGATTAATTCGATTGGAAGATCGATTG 530
Query 493 TGCAACACTCGAGGTCTGTGACGGATTCTGAGGTTCTCGATTATGATCACAGGCGGTGAT 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TGCAACACTCGAGGTCTGTGACGGATTCTGAGGTTCTCGATTATGATCACAGGCGGTGAT 590
Query 553 TATTATTACTATCTTAATGTGTGATTTTGTTGGCCTTAGGGTTTTTTCGTGGAATGTAAC 612
|| ||| | || | | ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 591 TACTAT--C-AT-T-A-TGTATGATTTTGTTGGCCTTAGGGTTTT--CGTGGAATGTAAC 642
Query 613 ACTCTCTTCTCTTTGAAATTATGATGTTATTGTACCTTGATCGTGATGTATCTAACGCCT 672
|||||||| ||||| || |||||||||||||||||| |||||||||||||||||| ||||
Sbjct 643 ACTCTCTTGTCTTTTAAGTTATGATGTTATTGTACCGTGATCGTGATGTATCTAATGCCT 702
Query 673 AAAGTTTCAAA--TCGATTCTCTCTTTGTCATGATTT 707
|||||||||| | |||||||||||||| |||||||
Sbjct 703 CAAGTTTCAAAAATTGATTCTCTCTTTGTTATGATTT 739
Score = 122 bits (66), Expect = 3e-27
Identities = 80/86 (93%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 1 GAGCGAGCAAAACGCAGCGTTTTGACAGCAATTGAGTGGATACCGAATCACACAATAATA 60
|||||| |||||||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct 2 GAGCGACCAAAACGCAGAGTTTTGACAGCAATTGAGTGGATACCGAATCACA-A-TAATA 59
Query 61 CAGAAAGACATTAAAAGACGAACAAG 86
||||||||||||||||| | ||||||
Sbjct 60 CAGAAAGACATTAAAAG-C-AACAAG 83
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5