BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481889
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29720.1 | Symbols: CTF2B | FAD/NAD(P)-binding oxidoreductas... 2130 0.0
AT2G35660.1 | Symbols: CTF2A | FAD/NAD(P)-binding oxidoreductas... 1775 0.0
> AT2G29720.1 | Symbols: CTF2B | FAD/NAD(P)-binding oxidoreductase
family protein | chr2:12700401-12702341 REVERSE LENGTH=1527
Length=1527
Score = 2130 bits (1153), Expect = 0.0
Identities = 1402/1519 (92%), Gaps = 30/1519 (2%)
Strand=Plus/Plus
Query 1 TCCACTTGTAACGTGGCTATGTCTCTTGTGCGTCCGATCTATCCTCTCCAATCCTTCTTG 60
||| |||| |||| ||||||||||||||||||||||||||| ||| | ||||||
Sbjct 35 TCCTCTTGGAACGCGGCTATGTCTCTTGTGCGTCCGATCTA-----TCC--T--TTCTTG 85
Query 61 GCCAGAAGCAAGAGATGGTTTCCGGTTCGAACAGGAACAAAACCGGTTTGTTTAGCAATG 120
|||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| |||
Sbjct 86 GCCAGAAGCAAGAGATGGTTTCCGGTTCGAACCGGATTAAAATCGGTTTGCTTAACAA-- 143
Query 121 AGTACCAGAGCCGAAACAAGCGGTGCTGACCGAGAGGAGAAAGTAGTGATTGTTGGCGGC 180
| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct 144 CG-ACCAGAGCCGAAACAAGCGGTGTTGACAGAGAGGAGAAAGTAGTGATTGTTGGGGGC 202
Query 181 GGGATTGGCGGACTTGCCACCGCCGTTGCTCTTCACCGGCTTGGAATCCGGTCGGTGGTG 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 203 GGGATTGGCGGACTTGCCACTGCCGTTGCTCTTCACCGGCTTGGAATCCGGTCGGTGGTG 262
Query 241 TTGGAGCAGGCAGAGTCGCTTCGGACCGGAGGAACATCTCTGACGCTATCCAAGAATGGG 300
|||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 263 TTGGAGCAGGCAGAGTCGCTTCGGACAGGAGGAGCATCGCTGACGCTATCCAAGAATGGG 322
Query 301 TGGCGTGTTCTTGACGACATCTCCGTTGGACCTCAACTCCGAAAACAGTTTCTTGAAATC 360
|||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 323 TGGCGTGTTCTTGACGCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATG 382
Query 361 CAAGGGGTGGTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCCAATTTAAAGAC 420
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 383 CAAGGGGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAAAGAC 442
Query 421 AATGATCAAAGCCAAGAAGTTCGGGCGGTGGAGAGACGAGTACTCTTGAAAACACTTGCA 480
||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||
Sbjct 443 AATGATCAAAGCCAAGAAGTTCGGGGGGTGGAGAGGCGAGTACTCTTGGAAACACTTGCA 502
Query 481 AGCCAGCTTCCTCCGCAAACCATTCGGTTTTCCTCAAAACTAGAAAGTATACAAAGCAAT 540
|||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 503 AGCCAGCTTCCTCCACAGACCATTCGGTTTTCTTCAAAACTGGAAAGTATACAAAGCAAT 562
Query 541 GTCAATGGTGACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCAAAGATTGTT 600
| ||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||
Sbjct 563 GCCAATGGTGACACTCTCCTTCAACTTAAAGATGGAACTCGGTTTCTTGCAAATATTGTT 622
Query 601 ATAGGTTGTGATGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 ATAGGTTGTGATGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAA 682
Query 661 TACGTTGGTTATTCCGCTTTCCGTGGCCTCGGGTTCTTTCCAAATGGACAGCCATTTCAG 720
|| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 683 TATGTTGGTTATTGCGCTTTCCGTGGCCTTGGGTTCTTTCCAAATGGACAGCCATTTCAG 742
Query 721 CAAAAGGTGAACTACATATTCGGTAGAGGGCTTCGAGCTGCATATGTACCTGTATCTACA 780
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 743 CAAAAGGTGAACTACATATTCGGTAGAGGGCTTCGAGCTGGATATGTACCTGTATCTGCA 802
Query 781 ACAAAAGTCTACTGGTTCATCTGTTTCAACAGCCCATCTCTAGGTCC-CAAAATTACAGA 839
||||||||||||||||||||| |||||||||||| |||||||| || |||| | | ||
Sbjct 803 ACAAAAGTCTACTGGTTCATCACTTTCAACAGCCCTTCTCTAGGGCCTCAAA-TGATGGA 861
Query 840 TCCAGCTATCCTAAGAAAACAAGCCAAGGAACTGGTTAGTACCTGGCCAGAAGATCTGCA 899
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 862 TCCAGCTATCCTAAGAAAAGAAGCCAAGGAACTGGTTAGTACCTGGCCAGAAGATCTGCA 921
Query 900 AAACCTCATCGATCTAACACCTGATGATGCAATCAGCAGAGA-TCCTCTTGTAGACCGGT 958
||||||||| ||||||||||||||||| |||||||| ||| | |||||||| |||||||
Sbjct 922 AAACCTCATTGATCTAACACCTGATGAAGCAATCAGTAGA-ACTCCTCTTGCGGACCGGT 980
Query 959 GGGTTTGGCCTGGCATTGCTCCT-CGAGCATCAAAAGGTCGGGTTGTTCTTGTTGGAGAT 1017
|| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 981 GGCTTTGGCCTGGCATTGCTCCTTC-AGCATCAAAAGGTAGGGTTGTTCTTGTTGGAGAT 1039
Query 1018 GCTTGGCACCCAATGACTCCAAATCTTGGACAAGGTGCTTGTTGTGCCTTGGAAGATTCA 1077
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1040 GCTTGGCACCCAATGACTCCAAATCTTGGACAAGGTGCTTGCTGTGCCTTGGAAGATTCA 1099
Query 1078 GTTGTTCTGGCAAATAAACTTGCCACTGCAATGAATGGAGGGACCGAATCAATTGAAGGG 1137
||| ||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||
Sbjct 1100 GTTCTTCTGGCAAATAAACTTGCCAGTGCAATAAATGGAGGGACCGAATCAGTTGAAGGG 1159
Query 1138 GCAATGGAATCATATGGGAGTGAGAGATGGTCTCAGGTATTCCGGTTGACAGTACTTGCA 1197
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 GCGATGGAATCATATAGGAGTGAGAGATGGTCTCAGGTATTCCGGTTGACAGTACTTGCA 1219
Query 1198 AACCTAGTTGGAAAACTTCTGCAGTCGGACAATCCTCTTGTGTGTTCCATTAGAGACAAT 1257
|||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 1220 AACCTAGTCGGAAAACTTCTGCAATCAGACAATCCTCTTGTGTGTTCCGTTAGAGACAAT 1279
Query 1258 ATTGTCAGTGCAATGGGACAATCCTCTCGGACCAATTCTGGAACACACAAACTTTGAGTG 1317
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1280 ATTGTCAGTGCAATGGGAAAATCCTCTCGGACCAACGATGGAACACACAAACTTTGAGTG 1339
Query 1318 TGAGCCTCTCTATGTTTCAAAAAGCTGAACTGTCTATGTAGTGAGATCTAAAAGCATTTG 1377
|||||||||||||||||||| | | |||||||||| |||||| ||||||||| ||
Sbjct 1340 TGAGCCTCTCTATGTTTCAATA---T----TGTCTATGTAATGAGATGTAAAAGCATATG 1392
Query 1378 TTCCATTAGATATAGGACTT-GAACAATGTATAATCAGAGGAACAATCTCAAAGAAGATA 1436
|||||| |||| ||||||| || |||||||| |||||||||| ||| ||||||||||||
Sbjct 1393 CTCCATTGGATAGAGGACTTAGA-CAATGTATCATCAGAGGAATAATATCAAAGAAGATA 1451
Query 1437 ATAAAAACTCTGTGAATTGAATGTAAAAGAATAAGACAATGTAATTCGTTTATGCTATGA 1496
||| |||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1452 ATATAAACTCTG--A-TTGAATGTAAAAGAATAATACAATGTAATTCGTTTATGCTATGA 1508
Query 1497 GAGGGAAGGCCTCTAGAGC 1515
|||||| | |||||||||
Sbjct 1509 AAGGGAATGACTCTAGAGC 1527
> AT2G35660.1 | Symbols: CTF2A | FAD/NAD(P)-binding oxidoreductase
family protein | chr2:14988447-14990426 FORWARD LENGTH=1478
Length=1478
Score = 1775 bits (961), Expect = 0.0
Identities = 1233/1363 (90%), Gaps = 23/1363 (2%)
Strand=Plus/Plus
Query 12 CGTGGCTATGTCTCTTGTGCGTCCGATCTATCCTCTCCAATCCTTCTTGGCCAGAAGCAA 71
|||||| |||||| || ||| |||||| ||||||||||||| | |||||||||||||||
Sbjct 46 CGTGGCCATGTCTGTTCTGCTTCCGATGTATCCTCTCCAAT-C--CTTGGCCAGAAGCAA 102
Query 72 GAGATGGTTTCCGGTTCGAA-CAGGAACAAAACCGGTTTGTTTAGCAATGAGTACCAGA- 129
||||| ||||||| |||||| || || |||||||||||||||||||| | | |||| |
Sbjct 103 GAGATTGTTTCCGATTCGAACCA-GATCAAAACCGGTTTGTTTAGCACT--G-ACCA-AT 157
Query 130 GC-CGAAACAAGCGGTGCTGACCGAGAGGAGAAAGTAGTGATTGTTGGCGGCGGGATTGG 188
|| | |||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 158 GCTC-AAACAAACGGTGGTGACCAAGAGGAGAAAGTAGTGATTGTTGGCGCCGGGATTGG 216
Query 189 CGGACTTGCCACCGCCGTTGCTCTTCACCGGCTTGGAATCCGGTCGGTGGTGTTGGAGCA 248
|||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 217 CGGACTTGCCACTGCCGTTTCACTTCACAGGCTTGGAATCCGGTCGGTGGTGTTGGAGCA 276
Query 249 GGCAGAGTCGCTTCGGACCGGAGGAACATCTCTGACGCTATCCAAGAATGGGTGGCGTGT 308
||||||||||||||| || || |||||||| |||||||||| ||||||||||||||| ||
Sbjct 277 GGCAGAGTCGCTTCGTACTGGTGGAACATCACTGACGCTATTCAAGAATGGGTGGCGCGT 336
Query 309 TCTTGACGACATCTCCGTTGGACCTCAACTCCGAAAACAGTTTCTTGAAATCCAAGGGGT 368
|||||||| ||| ||||| || ||||||||||||| ||||||||||||||| ||||| |
Sbjct 337 TCTTGACGCCATTTCCGTCGGGCCTCAACTCCGAACGCAGTTTCTTGAAATCGAAGGGAT 396
Query 369 GGTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCCAATTTAAAGACAATGATCA 428
|||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 397 GGTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTCAAAGACGATGATCA 456
Query 429 AAGCCAAGAAGTTCGGGCGGTGGAGAGACGAGTACTCTTGAAAACACTTGCAAGCCAGCT 488
|||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||
Sbjct 457 AAGCCAAGAAGTTCGGGCCGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAGCCAGCT 516
Query 489 TCCTCCGCAAACCATTCGGTTTTCCTCAAAACTAGAAAGTATACAAAGCAATGTCAATGG 548
|||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 517 TCCTCCACAAACCATTCGGTTTTCCTCAAAACTGGAAAGTATACAAAGCAATGCCAATGG 576
Query 549 TGACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCAAAGATTGTTATAGGTTG 608
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 577 TGACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCACAGATTGTTATTGGTTG 636
Query 609 TGATGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATACGTTGG 668
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 637 TGACGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATATGTTGG 696
Query 669 TTATTCCGCTTTCCGTGGCCTCGGGTTCTTTCCAAATGGACAGCCATTTCAGCAAAAGGT 728
||| ||||| |||||| || ||||||| |||||||||||||||||||||| |||||||
Sbjct 697 CCATTGCGCTTACCGTGGTCTTGGGTTCTATCCAAATGGACAGCCATTTCAGAAAAAGGT 756
Query 729 GAACTACATATTCGGTAGAGGGCTTCGAGCTGCATATGTACCTGTATCTACAACAAAAGT 788
||||||||||| ||||| |||| || |||||| |||||||||||||||||||||||||||
Sbjct 757 GAACTACATATACGGTAAAGGGATTAGAGCTGGATATGTACCTGTATCTACAACAAAAGT 816
Query 789 CTACTGGTTCATCTGTTTCAACAGCCCATCTCTAGGTCCCAAAATTACAGATCCAGCTAT 848
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 817 CTACTGGTTCATCTGTTTCAACAGCCCATCTCTAGGGCCCAAAATTACGGATCCAGCGAT 876
Query 849 CCTAAGAAAACAAGCCAAGGAACTGGTTAGTACCTGGCCAGAAGATCTGCAAAACCTCAT 908
||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 877 CCTAAAAAAACAAGCCAAAGAACTGGTTAGTACATGGCCAGAAGATCTGCAAAACCTCAT 936
Query 909 CGATCTAACACCTGATGATGCAATCAGCAGAGA-TCCTCTTGTAGACCGGTGGGTTTGGC 967
|||| ||||||||||||| | ||||||||| | |||||| |||||||||||| | ||||
Sbjct 937 CGATTTAACACCTGATGAAACTATCAGCAGA-ACTCCTCTAGTAGACCGGTGGCTATGGC 995
Query 968 CTGGCATTGCTCCTCGAGCATCAAAAGGTCGGGTTGTTCTTGTTGGAGATGCTTGGCACC 1027
||||||||||||||| |||||||||||| || || |||||||||||||||||||||||||
Sbjct 996 CTGGCATTGCTCCTCCAGCATCAAAAGGACGAGTGGTTCTTGTTGGAGATGCTTGGCACC 1055
Query 1028 CAATGACTCCAAATCTTGGACAAGGTGCTTGTTGTGCCTTGGAAGATTCAGTTGTTCTGG 1087
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1056 CAATGACTCCAAATCTTGGACAAGGTGCTTGTTGTGCCTTGGAAGATTCAGTAGTTCTGG 1115
Query 1088 CAAATAAACTTGCCACTGCAATGAATGGAGGGACCGAATCAATTGAAGGGGCAATGGAAT 1147
||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||
Sbjct 1116 CAAATAAACTTGCCAATGCAATAAATGGAGGAACCGAATCAATTGAAGTAGCAATGGAAT 1175
Query 1148 CATATGGGAGTGAGAGATGGTCTC-AGGTATTCCGGTTGACAGTACTTGCAAACCTAGTT 1206
|||| ||||||||||||||||||| || ||||| ||||||||||| |||||||||||||
Sbjct 1176 CATACGGGAGTGAGAGATGGTCTCGAGC-ATTCCCGTTGACAGTACGTGCAAACCTAGTT 1234
Query 1207 GGAAAACTTCTGCAGTCGGACAATCCTCTTGTGTGTTCCATTAGAGACAATATTGTCAGT 1266
|| ||||||||| | ||| |||||||| ||||||||||||||| |||||||||||| |
Sbjct 1235 GGCGCACTTCTGCAATGGGAGAATCCTCTAGTGTGTTCCATTAGAAACAATATTGTCA-T 1293
Query 1267 GC-AATGGGACA-ATCCTCTCGGACCAATTCTGGAACACACAAACTTTGAGTGTGAGCCT 1324
| || | || | || | |||||||| || ||||||||||||||||||||||| |||
Sbjct 1294 ACCAAAGTTACTGAGGCT-T-GGACCAATGCTTGAACACACAAACTTTGAGTGTGAACCT 1351
Query 1325 CTCTATGTTTCAAAAAGCTGAACT--GTCTATGTAGTGAGATC 1365
|||| |||||| |||||||||| | || ||| ||||||||||
Sbjct 1352 CTCTTTGTTTCTAAAAGCTGAATTTCGTATATATAGTGAGATC 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5