BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481900
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29900.1 | Symbols: PS2 | Presenilin-2 | chr2:12749746-12751... 2145 0.0
> AT2G29900.1 | Symbols: PS2 | Presenilin-2 | chr2:12749746-12751125
FORWARD LENGTH=1380
Length=1380
Score = 2145 bits (1161), Expect = 0.0
Identities = 1282/1340 (96%), Gaps = 10/1340 (1%)
Strand=Plus/Plus
Query 1 TTCATCATCCTCTTCGAATTTGTCAATTTGACTTGCCAAAACTGAAATCTTTGAGTACCC 60
||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 31 TTCATCATCTTCATCGAATTTGTCAATTTGACTTGCCAAAGCTGAAATCTTTGAGTACCC 90
Query 61 AATGGATCGAAACCAAAGACCCAGAAGCCTATTGGATTCATTAGGTGAAGAACTCATCGC 120
|||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 91 AATGGATCGAAATCAAAGACCCAGAAGCATTTTGGATTCATTAGGTGAAGAACTCATCGC 150
Query 121 AATCCTCACACCTGTCTCGATTTGTATGTTCACCGTTGTTCTTCTTGTCTGTATCCTAAA 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 151 AATCCTCACACCTGTCTCGATTTGTATGTTCACCGTTGTTCTTCTGGTCTGTATCCTAAA 210
Query 181 CTCCGACCCTTCTTCTTCCTCCGCTTCTTTCTCCTCCATAGCCACCGCAGCTTACGCAGA 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 211 CTCCGACCCTTCTTCTTCCTCCGCTTCTTTCTCCTCTATAGCCACCGCAGCTTACTCTGA 270
Query 241 GAGCGATTCAGATTCCTCATGGGACAAATTCGTCGGTGCCCTTTTGAATTCTGTCGTCTT 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 271 GAGCGATTCAGATTCCTCATGGGACAAATTCGTAGGTGCCCTTTTGAATTCTGTCGTCTT 330
Query 301 CGTCGCTGCGATCACTGTTGCAACATTTGTTCTCGTGCTGCTCTTTTATCTCAGATGTGT 360
||||||||| |||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 331 CGTCGCTGCAATCACTGTTGCAACATTTGTTCTCGTCCTTCTCTTTTATCTCCGATGTGT 390
Query 361 TAAATTCTTGAAATTCTACATGGGTTTCTCAGCTTTTATCGTTTTAGGGAACTTAGGTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TAAATTCTTGAAATTCTACATGGGTTTCTCAGCTTTTATCGTTTTAGGGAACTTAGGTGG 450
Query 421 AGAAATCTTAGTTTTATTGATCGATCGATTTAGATTCCCGATTGATTCCATCACGTTTCT 480
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 451 AGAAATCTTAGTTTTATTGATAGATCGATTTAGATTCCCGATTGATTCTATCACGTTTTT 510
Query 481 GATACTTCTTTTCAATTTCTCTGTCGTTGGTGTTTTCGCTGTGTTCATGTCGAAGTTTTC 540
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 511 GATACTTCTCTTCAATTTCTCCGTCGTTGGTGTTTTCGCTGTGTTCATGTCGAAGTTTTC 570
Query 541 GATTTTGATCACTCAAGGTTACTTGGTTTGGATTGGTGTTTTAGTTGCTTACTTCTTCAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GATTTTGATCACTCAAGGTTACTTGGTTTGGATTGGTGTTTTAGTTGCTTACTTCTTCAC 630
Query 601 GTTATTACCTGAATGGACTACTTGGGTTCTTCTCGTAGCTTTGGCACTTTATGACATTGC 660
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GTTGTTACCTGAATGGACTACTTGGGTTCTTCTCGTAGCTTTGGCACTTTATGACATTGC 690
Query 661 TGCTGTTCTTTTACCTGTTGGTCCATTACGTCTTCTTGTTGAAATGGCTATATCTAGAGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TGCTGTTCTTTTACCTGTTGGTCCATTACGTCTTCTTGTTGAAATGGCTATATCTAGAGA 750
Query 721 CGAAGATATCCCGGCTTTGGTTTACGAAGCACGGCCTGTGATTCGAAATGATTCCCGTTT 780
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 751 CGAAGACATCCCGGCTTTGGTTTACGAAGCACGGCCTGTGATCCGAAATGATTCCCGTTC 810
Query 781 GGTTCAGAGAAGAGTTTGGAGAGAACGAAGATCCAATGACGTTGAGAACCACGCTAATCG 840
|||||||||||||||||||||||||| |||||| | | | ||||| ||||||||||
Sbjct 811 GGTTCAGAGAAGAGTTTGGAGAGAACAAAGATCTA--GCC----AGAACAACGCTAATCG 864
Query 841 GAATGAAGTAAGGGCGGTTAGA-TCAG-AGGAAGTAGAAGAAGAACATGTCGGTTCAAGC 898
||||||||||||| |||| || |||| || ||||||||||||||||||| ||||||||
Sbjct 865 AAATGAAGTAAGGGTGGTT-GAATCAGCAG-AAGTAGAAGAAGAACATGTTGGTTCAAGT 922
Query 899 GAAAGGGCAGAGATATCTGTGCCGTTGATTGATCGAAGACCTGAGCAGGCTGAGAATTCA 958
||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 923 GAAAGAGCAGAGATATCTGTGCCGTTGATTGATAGAAGACCTGAGCAAGCTGAGAATTCA 982
Query 959 GAGACTTTTCTTGAAGGAATTGGGTTGGGATCATCAGGTGCTATCAAGTTAGGGCTTGGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 GAGACTTTTCTTGAAGGAATTGGGTTGGGATCATCAGGTGCTATCAAGTTAGGGCTTGGG 1042
Query 1019 GATTTCATCTTCTATAGTGTTTTGGTTGGAAGAGCTGCAATGTATGATCTGATGACGGTT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 GATTTCATCTTCTATAGTGTTTTGGTTGGAAGAGCTGCAATGTATGATCTGATGACGGTT 1102
Query 1079 TATGCTTGTTACTTGGCGATCATAGCCGGTTTAGGGATCACATTGATGCTATTGTCTGTG 1138
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1103 TACGCTTGTTACTTGGCGATCATAGCTGGTTTAGGGATCACATTGATGCTATTGTCTGTG 1162
Query 1139 TATCAGAAGGCTTTACCAGCTCTTCCTGTATCGATCATGTTAGGCGTTGTGTTTTACTTT 1198
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1163 TATCAGAAGGCTTTACCAGCTCTTCCTGTATCGATCATGTTAGGTGTTGTGTTTTACTTT 1222
Query 1199 TTGGCGCGGTTATTGCTTGAAGTTTTTGTTGTGCAATGTTCTTCAAACCTTGTGATGTTC 1258
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1223 TTGGCGCGGTTGTTGCTTGAAGTTTTCGTTGTGCAATGTTCTTCTAACCTTGTGATGTTC 1282
Query 1259 TAAGAGTATGGAAAGTGAAAGGGTGATTTTGAGTACAGTTTCGTTTGTTTCGTCAAAATA 1318
||| |||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |
Sbjct 1283 TAACTGTATGGAATGTGAAAGGGTGGTTTTGAGTACAGTTTCATTTGTTTCGTCAAAACA 1342
Query 1319 ATTGTGTTGGTTTGATTGAT 1338
||| ||||||||||||||||
Sbjct 1343 ATTTTGTTGGTTTGATTGAT 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5